mRNA_F-serratus_M_contig123.1747.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.160e-13 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADDLFKSRLV 201
PNT+ +AMS PQ WK KE+A L+KH VY LVP SVP G K++ +++V K D FK+RLV
Sbjct: 807 PNTYDKAMSYPQREEWKGVCSKEVADLRKHNVYNLVPLSSVPKGDKILGTKFVFKKMLDGRFKARLV 873
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A067MMT3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MMT3_9AGAM) HSP 1 Score: 61.6 bits (148), Expect = 5.260e-11 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
P T+ EA + P + W+ ++E+AS++KH VYELVP SVP G+KV+ ++ K+K D FK RLVA
Sbjct: 7 PATWTEACNSPYADNWREGYEEELASIRKHEVYELVPRSSVPKGRKVIQNKPCFKLKRDQDNNPARFKVRLVA 79
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0) HSP 1 Score: 63.9 bits (154), Expect = 2.830e-10 Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADDLFKSRLVA 204
P T++EA+ P S +W+ A + E+ S+ + V+ LV A P G KV++ +W+ K+KADD FK RLVA
Sbjct: 194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLVDA---PQGAKVIECKWIFKLKADDTFKGRLVA 258
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5H6H4_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H6H4_9HEMI) HSP 1 Score: 60.1 bits (144), Expect = 3.920e-9 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKAD-----DLFKSRLVA 204
P T++EAM ++A+WK A D EI SL + +ELV +P G+K+VD RWV K+K D FK+R+VA
Sbjct: 27 PQTYREAMQTGEAAQWKAAMDDEIKSLIQMDTWELV---DLPPGKKLVDCRWVFKVKIKANGEFDKFKARVVA 96
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5H5K9_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H5K9_9HEMI) HSP 1 Score: 60.5 bits (145), Expect = 4.750e-9 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKAD-----DLFKSRLVA 204
P T++EAM ++A+WK A D EI SL + +ELV +P G+K+VD RWV K+K D FK+R+VA
Sbjct: 858 PQTYREAMQTEEAAQWKAAMDDEIKSLIQMDTWELV---DLPPGKKLVDCRWVFKVKIKANGEFDKFKARVVA 927
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: Q8WSJ0_ANOGA (Polyprotein (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WSJ0_ANOGA) HSP 1 Score: 60.1 bits (144), Expect = 6.450e-9 Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
P T+KEA+S PQSA WKTA +E+ S +++G +ELV +P +K + S+W+ KAD+ +K+RLVA
Sbjct: 704 PKTYKEAVSGPQSAEWKTAMAEEMQSHQENGTWELV---ELPPHRKAIGSKWIFNCKADEDGHFVRYKARLVA 773
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QM97_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QM97_TRIMR) HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
P++++E SLP R W AA +E+ASLK V+ELV +PAG+KV+ S+WV KIK A D +K+RLVA
Sbjct: 309 PSSWEEVTSLPPCERDKWIAAAKEEMASLKNRDVWELV---KLPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 380
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QBM2_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QBM2_TRIMR) HSP 1 Score: 59.3 bits (142), Expect = 1.210e-8 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
P++++E SLP R W AA +E+ASLK V+ELV +PAG+KV+ S+WV KIK A D +K+RLVA
Sbjct: 341 PSSWEEVTSLPPCERDKWIAAAKEEMASLKNRDVWELV---KLPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 412
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QQI6_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QQI6_TRIMR) HSP 1 Score: 58.5 bits (140), Expect = 2.240e-8 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
P++++E +LP R W AA +E+ASLK V+ELV +PAG+KV+ S+WV KIK A D +K+RLVA
Sbjct: 86 PSSWEEVTNLPPCERDKWMAAAKEEMASLKNREVWELV---ELPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 157
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9) HSP 1 Score: 58.2 bits (139), Expect = 3.110e-8 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
P T+KEA+S PQSA WK+A +E+ S ++G +EL +P +K + S+W+ K KAD+ +K+RLVA
Sbjct: 834 PKTYKEAVSGPQSAEWKSAMAEEMQSHHENGTWELA---ELPPHRKAIGSKWIFKCKADEDGHFVRYKARLVA 903 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig123.1747.1 >prot_F-serratus_M_contig123.1747.1 ID=prot_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=polypeptide|length=61bp MSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKback to top mRNA from alignment at F-serratus_M_contig123:132893..133096- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig123.1747.1 ID=mRNA_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig123:132893..133096- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig123:132893..133096- >mRNA_F-serratus_M_contig123.1747.1 ID=mRNA_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig123:132893..133096- (Fucus serratus male)back to top |