mRNA_F-serratus_M_contig1226.1725.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1226.1725.1
Unique NamemRNA_F-serratus_M_contig1226.1725.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1226.1725.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 9.680e-13
Identity = 58/124 (46.77%), Postives = 65/124 (52.42%), Query Frame = 1 
Query:    1 MNFVAGSLLLACSTRDPAV-------TEGPRGVAGDGGSVS---------DXGHGDTGGSCGGVSGARGDGERDVVDAVMESEQPRDEEFEESGEDEKQ-EWRSSPAHLRAEKDVFWLMMALTS 321
            MNFVAGSLLLAC+TRDPAV        +  R V GD              D G GD       VS          +     S     ++F+ SGEDE Q EWRS PAHLRAEKDVFWLM+ALTS
Sbjct:  245 MNFVAGSLLLACATRDPAVGAPCYPNCDRRRSVRGDSSXXXXXXXXXXXXDGGDGD-------VSPFVATATSMALSPTSASAWEEWDDFDGSGEDESQPEWRSGPAHLRAEKDVFWLMLALTS 361
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1226.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD88_ECTSI9.680e-1346.77Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1226contigF-serratus_M_contig1226:176732..178185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D8LD88
Preferred nameFASTKD3
KEGG koko:K19944
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size323
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.3112676-CDS-F-serratus_M_contig1226:176731..1768031622929140.3112676-CDS-F-serratus_M_contig1226:176731..176803Fucus serratus maleCDSF-serratus_M_contig1226 176732..176803 -
1690962721.837766-CDS-F-serratus_M_contig1226:176731..1768031690962721.837766-CDS-F-serratus_M_contig1226:176731..176803Fucus serratus maleCDSF-serratus_M_contig1226 176732..176803 -
1622929140.329198-CDS-F-serratus_M_contig1226:177936..1781851622929140.329198-CDS-F-serratus_M_contig1226:177936..178185Fucus serratus maleCDSF-serratus_M_contig1226 177937..178185 -
1690962721.849744-CDS-F-serratus_M_contig1226:177936..1781851690962721.849744-CDS-F-serratus_M_contig1226:177936..178185Fucus serratus maleCDSF-serratus_M_contig1226 177937..178185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1226.1725.1prot_F-serratus_M_contig1226.1725.1Fucus serratus malepolypeptideF-serratus_M_contig1226 176732..178185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1226.1725.1

>prot_F-serratus_M_contig1226.1725.1 ID=prot_F-serratus_M_contig1226.1725.1|Name=mRNA_F-serratus_M_contig1226.1725.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MNFVAGSLLLACSTRDPAVTEGPRGVAGDGGSVSDGGHGDTGGSCGGVSG
ARGDGERDVVDAVMESEQPRDEEFEESGEDEKQEWRSSPAHLRAEKDVFW
LMMALTS
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mRNA from alignment at F-serratus_M_contig1226:176732..178185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1226.1725.1 ID=mRNA_F-serratus_M_contig1226.1725.1|Name=mRNA_F-serratus_M_contig1226.1725.1|organism=Fucus serratus male|type=mRNA|length=1454bp|location=Sequence derived from alignment at F-serratus_M_contig1226:176732..178185- (Fucus serratus male)
ATGAACTTCGTCGCCGGATCGCTGCTGCTGGCGTGTTCCACTCGAGACCC
CGCCGTGACCGAAGGTCCCCGTGGAGTAGCTGGAGACGGTGGAAGCGTTA
GCGACGGGGGACACGGCGACACTGGCGGCAGCTGTGGAGGCGTGTCTGGA
GCGCGGGGGGACGGCGAGCGAGATGTGGTAGATGCTGTGATGGAGTCTGA
ACAGCCTAGGGATGAAGAGTTTGAAGAAAGCGGCGAAGATGAGAAACAGG
CGAGAGGATGGGGTTTCCATCGGCCGACTGGCTGGTCACTCATTGGCGAC
TTGGCCAGTCTTCCTGACTGACTTGGGTGACTCACTGTATGGCTAAATGA
ACAATTGAATGTTGGCGTTTCTTTCTCGTGGGCCCAACGAACTGATTAGG
ATGAAATGGAACGGGATGCAACGCGATGTGTTTGACTTTGTGTGTGTGTG
TCTGTTTCTGTGCCTGTGTCTGTGCGTGGTGGATTTAACTCTGAGCCTAT
GTTTCACCAAGAATACTTCGCTATCATTACCATGGTGACATGTCGCTCGG
CATGTTGCGTATGACGTGAGACGCTCGGTGTGGTGGGACGAAACCGATTC
GCTGAGCGATCCCACGTACTATCAAGTATTATACGAGTCCTCTAGTATCC
TCAGGGGGCGTCTTCCAACAGCCAGAGCGGGCGAGGTCTTCTGACGGCCA
CACAGGCATATCGATAAGGACAGGGATAGAACGGCACACGAGTATCACAC
CTAAAACTCGATGTGTCTGTGTCCACTCACACTTTACTAAAATAGCAATA
CTAATTGTAAATGTGTCCTAAAGAATAATGCCCGCTATGACTGAAAGTTC
TACTTGAATCATAATATCTCCTACAATTGTGACGCCCACTCCAAGAACAA
TGTCTGCGGTACGCTCAATCATAACGGCTTCCGTGACACGAACATAACTA
CTTTGAGTTGTCGTCATATCTAATATGATACAAAGAGGTATTTCGTACGA
TATTACTTGGCAGCTTCTAATTTTCACTTCGGCGACGTGTTCCTTCCTAT
TTCAACCCATCATGTGCCCTTTCGTTACCCAAAATAAGAAAATACCGTTT
CGTGTACAACATTATGCTACAAATAACATTGAACGAGTTTTGCGAAAATT
ATGAATCTAGAACCTATTAATACTCTTATCACGCTGGCTGTTTTTGCCGC
ACAAAAACGTGTAGACTAATTAATGCGGATCAGTATAGTACTGGCGTCTA
TTTCCTTTCGTACCAGGTGTCATCGCTACCGTAGCACTCATGTTGTGCGT
GAATCTTTTCCAGCATACAGAGTATCTTGTGCATCAAGATTTACCCCTCC
GCCGACGTGGTTTGGCGTTAATCGGGATTCAGGAGTGGCGAAGCAGTCCG
GCGCACCTGAGAGCGGAAAAGGACGTCTTTTGGCTCATGATGGCGCTAAC
CTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1226:176732..178185-

>mRNA_F-serratus_M_contig1226.1725.1 ID=mRNA_F-serratus_M_contig1226.1725.1|Name=mRNA_F-serratus_M_contig1226.1725.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1226:176732..178185- (Fucus serratus male)
ATGAACTTCGTCGCCGGATCGCTGCTGCTGGCGTGTTCCACTCGAGACCC
CGCCGTGACCGAAGGTCCCCGTGGAGTAGCTGGAGACGGTGGAAGCGTTA
GCGACGGGGGACACGGCGACACTGGCGGCAGCTGTGGAGGCGTGTCTGGA
GCGCGGGGGGACGGCGAGCGAGATGTGGTAGATGCTGTGATGGAGTCTGA
ACAGCCTAGGGATGAAGAGTTTGAAGAAAGCGGCGAAGATGAGAAACAGA
TGAACTTCGTCGCCGGATCGCTGCTGCTGGCGTGTTCCACTCGAGACCCC
GCCGTGACCGAAGGTCCCCGTGGAGTAGCTGGAGACGGTGGAAGCGTTAG
CGACGGGGGACACGGCGACACTGGCGGCAGCTGTGGAGGCGTGTCTGGAG
CGCGGGGGGACGGCGAGCGAGATGTGGTAGATGCTGTGATGGAGTCTGAA
CAGCCTAGGGATGAAGAGTTTGAAGAAAGCGGCGAAGATGAGAAACAGGA
GTGGCGAAGCAGTCCGGCGCACCTGAGAGCGGAAAAGGACGTCTTTTGGC
TCATGATGGCGCTAACCTCCGAGTGGCGAAGCAGTCCGGCGCACCTGAGA
GCGGAAAAGGACGTCTTTTGGCTCATGATGGCGCTAACCTCC
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