mRNA_F-serratus_M_contig1220.1714.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1220.1714.1
Unique NamemRNA_F-serratus_M_contig1220.1714.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1220.1714.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 5.760e-19
Identity = 92/257 (35.80%), Postives = 120/257 (46.69%), Query Frame = 2 
Query:  491 PDTVSYNAAIKACGDAGEWEHAVALLEEMRRR------------------NFGNKTCAKGIGGFKGERLDGRCDAAPQV------------GVADPDGDAVGRGEAGSSPSRLR---------PSPDATSYSMAVSACSRAGNADGALGLLEVMRQDGFSPDSVTFASAIEVCDR-----GCGRAHEEAPQAPLLLAALIDRMRSSTVPSSAPCYARALEACADAGLCERGRSLMDDVVAEKVGVERKSVDRRRAGV 1129
            P+ VS+NAAI AC +AGEW+ A++LLEEMRR                   N  + + A G     G    G   AA               G+  P+G      E  S   R R         P+PD  SYS  ++ACSRAGN + ALGLL+ MR+DG  P+S TF++ I    R     G G   +EA  A L L A +   R   +   A  Y  AL+ACADA LC+  R L+  +V+  V V+    DR R  V
Sbjct:  444 PNRVSFNAAINACSNAGEWQQAISLLEEMRRNANAGSDAAEYNDDLALPANREHDSAADGNNKDAGLLAAGAAAAARNSDPRELTPSEYGGGITAPEG-----AEGVSKADRRRXXXXGRTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPNSTTFSTMISAWRRDWGYGGDGARGQEARGALLPLLASMATCRG--LAPDARLYGSALDACADASLCQPARDLLAGMVSSGVPVD----DRARRAV 689
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1220.1714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI5.760e-1935.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1220contigF-serratus_M_contig1220:59142..60744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue5e-21
Seed eggNOG ortholog2880.D8LCM4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1603
Cds size1158
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1220.1714.1prot_F-serratus_M_contig1220.1714.1Fucus serratus malepolypeptideF-serratus_M_contig1220 59173..60330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.71653-UTR-F-serratus_M_contig1220:59141..591721622929138.71653-UTR-F-serratus_M_contig1220:59141..59172Fucus serratus maleUTRF-serratus_M_contig1220 59142..59172 +
1690962721.0872018-UTR-F-serratus_M_contig1220:59141..591721690962721.0872018-UTR-F-serratus_M_contig1220:59141..59172Fucus serratus maleUTRF-serratus_M_contig1220 59142..59172 +
1622929138.7453096-UTR-F-serratus_M_contig1220:60330..607441622929138.7453096-UTR-F-serratus_M_contig1220:60330..60744Fucus serratus maleUTRF-serratus_M_contig1220 60331..60744 +
1690962721.1064548-UTR-F-serratus_M_contig1220:60330..607441690962721.1064548-UTR-F-serratus_M_contig1220:60330..60744Fucus serratus maleUTRF-serratus_M_contig1220 60331..60744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.7316928-CDS-F-serratus_M_contig1220:59172..603301622929138.7316928-CDS-F-serratus_M_contig1220:59172..60330Fucus serratus maleCDSF-serratus_M_contig1220 59173..60330 +
1690962721.0974922-CDS-F-serratus_M_contig1220:59172..603301690962721.0974922-CDS-F-serratus_M_contig1220:59172..60330Fucus serratus maleCDSF-serratus_M_contig1220 59173..60330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1220.1714.1

>prot_F-serratus_M_contig1220.1714.1 ID=prot_F-serratus_M_contig1220.1714.1|Name=mRNA_F-serratus_M_contig1220.1714.1|organism=Fucus serratus male|type=polypeptide|length=386bp
MREAGVAPDAISFNSAIAGYAKTGRWKKALSLLKEMESSQGAGGTEADAA
ATIRISPDEFSYSSAIVACGKGGEWSLAVGLLDTMRRKGIRQSTVAYNAA
IKACGDAGQWERALELLREMQAVQTGGPTQTVQADGSAPPAERLAAMVAS
VPFPDTVSYNAAIKACGDAGEWEHAVALLEEMRRRNFGNKTCAKGIGGFK
GERLDGRCDAAPQVGVADPDGDAVGRGEAGSSPSRLRPSPDATSYSMAVS
ACSRAGNADGALGLLEVMRQDGFSPDSVTFASAIEVCDRGCGRAHEEAPQ
APLLLAALIDRMRSSTVPSSAPCYARALEACADAGLCERGRSLMDDVVAE
KVGVERKSVDRRRAGVRLRAALFQASAGGPAGLKI*
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mRNA from alignment at F-serratus_M_contig1220:59142..60744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1220.1714.1 ID=mRNA_F-serratus_M_contig1220.1714.1|Name=mRNA_F-serratus_M_contig1220.1714.1|organism=Fucus serratus male|type=mRNA|length=1603bp|location=Sequence derived from alignment at F-serratus_M_contig1220:59142..60744+ (Fucus serratus male)
GGCCAAGCGTGCCGCGGAGCTGCTGACGGAAATGCGAGAAGCCGGCGTGG
CCCCCGACGCGATCAGCTTCAACTCGGCGATCGCTGGGTACGCGAAAACG
GGGCGTTGGAAGAAGGCACTGTCGCTATTGAAGGAGATGGAGTCATCCCA
AGGGGCAGGTGGGACGGAGGCGGACGCGGCGGCGACGATACGTATATCTC
CCGATGAGTTCAGCTATAGCTCTGCGATCGTTGCATGCGGAAAGGGCGGG
GAGTGGTCTCTAGCCGTCGGGTTACTAGACACAATGCGGCGGAAGGGAAT
CCGGCAGAGCACAGTAGCGTACAACGCTGCCATAAAAGCCTGCGGGGACG
CGGGGCAGTGGGAGAGAGCTCTAGAGCTTCTGAGAGAAATGCAAGCAGTC
CAGACGGGTGGCCCAACGCAGACCGTGCAGGCGGATGGATCGGCGCCGCC
GGCGGAACGGTTAGCTGCTATGGTGGCATCCGTACCGTTTCCTGACACGG
TTAGCTACAACGCGGCCATCAAAGCGTGCGGCGACGCGGGCGAGTGGGAA
CATGCTGTGGCCCTTCTCGAGGAGATGCGCAGACGAAACTTCGGGAATAA
AACCTGTGCGAAGGGTATAGGCGGTTTCAAAGGCGAGCGCCTCGATGGTC
GGTGCGACGCTGCTCCCCAGGTAGGCGTCGCAGACCCTGATGGTGACGCT
GTAGGGAGAGGTGAGGCGGGTTCAAGCCCGTCGAGATTGCGGCCGTCGCC
CGACGCGACGAGCTACTCCATGGCCGTCTCGGCGTGCAGCCGGGCGGGGA
ACGCGGATGGAGCGCTGGGGCTGCTGGAAGTAATGCGACAAGACGGCTTC
AGTCCGGACTCGGTCACCTTTGCATCGGCAATTGAGGTTTGCGACCGAGG
GTGTGGACGTGCACATGAAGAGGCGCCGCAGGCGCCGCTGCTGCTGGCGG
CGTTGATCGACCGCATGCGATCTTCCACCGTTCCATCGAGTGCGCCCTGC
TACGCCAGGGCGCTCGAGGCCTGCGCTGACGCGGGTCTCTGCGAGCGCGG
TCGCTCTTTGATGGATGACGTGGTCGCTGAAAAGGTGGGGGTGGAAAGAA
AGAGCGTTGACCGCCGTCGCGCGGGCGTGCGCCTGCGTGCCGCGCTCTTT
CAGGCAAGCGCCGGCGGTCCAGCCGGTCTCAAAATATAGGGGCTACGAGA
CTGGTTTGGCGTAGTGTTGGGATCGGGCGAAAGACTCGTTGTAAAACTAG
CTGGAGTGATGCCAGTAGTGTTGCTTCTGTAATGCTGTGATAGGGTTTTC
ATTGTATTAGCTCTTGAAGGTGAACTCTTGCCAGGAGGTGGCTGCCAGCA
GAGCGCGAGCTGTAAGCGTGTGCTGCAGCTTCCTCGGCTTTTGGGTCCCA
AGTCGCGTCGCACGTATGCTCTCGCTTTAGAAAATGTCTTGTGCTGTACC
TGAGGCGTCTTGGAAGGGCTTCCCTTCGCTAGGGCGGATCAATGAAAAGT
CATCTTCGTACTCGTGCCCGAGAGGTGGAAGGTTTCGGTGAGGATAAAAG
GCGTCGCTTGCAGGGTTTCTCGAGATGCGGAAACAAAGAGGGCAAAAGCT
ACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1220:59142..60744+

>mRNA_F-serratus_M_contig1220.1714.1 ID=mRNA_F-serratus_M_contig1220.1714.1|Name=mRNA_F-serratus_M_contig1220.1714.1|organism=Fucus serratus male|type=CDS|length=2316bp|location=Sequence derived from alignment at F-serratus_M_contig1220:59142..60744+ (Fucus serratus male)
ATGCGAGAAGCCGGCGTGGCCCCCGACGCGATCAGCTTCAACTCGGCGAT
CGCTGGGTACGCGAAAACGGGGCGTTGGAAGAAGGCACTGTCGCTATTGA
AGGAGATGGAGTCATCCCAAGGGGCAGGTGGGACGGAGGCGGACGCGGCG
GCGACGATACGTATATCTCCCGATGAGTTCAGCTATAGCTCTGCGATCGT
TGCATGCGGAAAGGGCGGGGAGTGGTCTCTAGCCGTCGGGTTACTAGACA
CAATGCGGCGGAAGGGAATCCGGCAGAGCACAGTAGCGTACAACGCTGCC
ATAAAAGCCTGCGGGGACGCGGGGCAGTGGGAGAGAGCTCTAGAGCTTCT
GAGAGAAATGCAAGCAGTCCAGACGGGTGGCCCAACGCAGACCGTGCAGG
CGGATGGATCGGCGCCGCCGGCGGAACGGTTAGCTGCTATGGTGGCATCC
GTACCGTTTCCTGACACGGTTAGCTACAACGCGGCCATCAAAGCGTGCGG
CGACGCGGGCGAGTGGGAACATGCTGTGGCCCTTCTCGAGGAGATGCGCA
GACGAAACTTCGGGAATAAAACCTGTGCGAAGGGTATAGGCGGTTTCAAA
GGCGAGCGCCTCGATGGTCGGTGCGACGCTGCTCCCCAGGTAGGCGTCGC
AGACCCTGATGGTGACGCTGTAGGGAGAGGTGAGGCGGGTTCAAGCCCGT
CGAGATTGCGGCCGTCGCCCGACGCGACGAGCTACTCCATGGCCGTCTCG
GCGTGCAGCCGGGCGGGGAACGCGGATGGAGCGCTGGGGCTGCTGGAAGT
AATGCGACAAGACGGCTTCAGTCCGGACTCGGTCACCTTTGCATCGGCAA
TTGAGGTTTGCGACCGAGGGTGTGGACGTGCACATGAAGAGGCGCCGCAG
GCGCCGCTGCTGCTGGCGGCGTTGATCGACCGCATGCGATCTTCCACCGT
TCCATCGAGTGCGCCCTGCTACGCCAGGGCGCTCGAGGCCTGCGCTGACG
CGGGTCTCTGCGAGCGCGGTCGCTCTTTGATGGATGACGTGGTCGCTGAA
AAGGTGGGGGTGGAAAGAAAGAGCGTTGACCGCCGTCGCGCGGGCGTGCG
CCTGCGTGCCGCGCTCTTTCAGGCAAGCGCCGGCGGTCCAGCCGGTCTCA
AAATATAGATGCGAGAAGCCGGCGTGGCCCCCGACGCGATCAGCTTCAAC
TCGGCGATCGCTGGGTACGCGAAAACGGGGCGTTGGAAGAAGGCACTGTC
GCTATTGAAGGAGATGGAGTCATCCCAAGGGGCAGGTGGGACGGAGGCGG
ACGCGGCGGCGACGATACGTATATCTCCCGATGAGTTCAGCTATAGCTCT
GCGATCGTTGCATGCGGAAAGGGCGGGGAGTGGTCTCTAGCCGTCGGGTT
ACTAGACACAATGCGGCGGAAGGGAATCCGGCAGAGCACAGTAGCGTACA
ACGCTGCCATAAAAGCCTGCGGGGACGCGGGGCAGTGGGAGAGAGCTCTA
GAGCTTCTGAGAGAAATGCAAGCAGTCCAGACGGGTGGCCCAACGCAGAC
CGTGCAGGCGGATGGATCGGCGCCGCCGGCGGAACGGTTAGCTGCTATGG
TGGCATCCGTACCGTTTCCTGACACGGTTAGCTACAACGCGGCCATCAAA
GCGTGCGGCGACGCGGGCGAGTGGGAACATGCTGTGGCCCTTCTCGAGGA
GATGCGCAGACGAAACTTCGGGAATAAAACCTGTGCGAAGGGTATAGGCG
GTTTCAAAGGCGAGCGCCTCGATGGTCGGTGCGACGCTGCTCCCCAGGTA
GGCGTCGCAGACCCTGATGGTGACGCTGTAGGGAGAGGTGAGGCGGGTTC
AAGCCCGTCGAGATTGCGGCCGTCGCCCGACGCGACGAGCTACTCCATGG
CCGTCTCGGCGTGCAGCCGGGCGGGGAACGCGGATGGAGCGCTGGGGCTG
CTGGAAGTAATGCGACAAGACGGCTTCAGTCCGGACTCGGTCACCTTTGC
ATCGGCAATTGAGGTTTGCGACCGAGGGTGTGGACGTGCACATGAAGAGG
CGCCGCAGGCGCCGCTGCTGCTGGCGGCGTTGATCGACCGCATGCGATCT
TCCACCGTTCCATCGAGTGCGCCCTGCTACGCCAGGGCGCTCGAGGCCTG
CGCTGACGCGGGTCTCTGCGAGCGCGGTCGCTCTTTGATGGATGACGTGG
TCGCTGAAAAGGTGGGGGTGGAAAGAAAGAGCGTTGACCGCCGTCGCGCG
GGCGTGCGCCTGCGTGCCGCGCTCTTTCAGGCAAGCGCCGGCGGTCCAGC
CGGTCTCAAAATATAG
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