prot_F-serratus_M_contig1220.1714.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1220.1714.1
Unique Nameprot_F-serratus_M_contig1220.1714.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length386
Homology
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BLAST of mRNA_F-serratus_M_contig1220.1714.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.150e-19
Identity = 92/257 (35.80%), Postives = 120/257 (46.69%), Query Frame = 0 
Query:  154 PDTVSYNAAIKACGDAGEWEHAVALLEEMRRR------------------NFGNKTCAKGIGGFKGERLDGRCDAAPQV------------GVADPDGDAVGRGEAGSSPSRLR---------PSPDATSYSMAVSACSRAGNADGALGLLEVMRQDGFSPDSVTFASAIEVCDR-----GCGRAHEEAPQAPLLLAALIDRMRSSTVPSSAPCYARALEACADAGLCERGRSLMDDVVAEKVGVERKSVDRRRAGV 366
            P+ VS+NAAI AC +AGEW+ A++LLEEMRR                   N  + + A G     G    G   AA               G+  P+G      E  S   R R         P+PD  SYS  ++ACSRAGN + ALGLL+ MR+DG  P+S TF++ I    R     G G   +EA  A L L A +   R   +   A  Y  AL+ACADA LC+  R L+  +V+  V V+    DR R  V
Sbjct:  444 PNRVSFNAAINACSNAGEWQQAISLLEEMRRNANAGSDAAEYNDDLALPANREHDSAADGNNKDAGLLAAGAAAAARNSDPRELTPSEYGGGITAPEG-----AEGVSKADRRRXXXXGRTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPNSTTFSTMISAWRRDWGYGGDGARGQEARGALLPLLASMATCRG--LAPDARLYGSALDACADASLCQPARDLLAGMVSSGVPVD----DRARRAV 689
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1220.1714.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI1.150e-1935.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..138
e-value: 8.5E-32
score: 112.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 11..39
e-value: 3.7E-7
score: 30.0
coord: 60..90
e-value: 5.5E-4
score: 20.0
coord: 95..121
e-value: 1.2E-5
score: 25.2
coord: 244..273
e-value: 9.0E-4
score: 19.3
coord: 157..187
e-value: 1.2E-6
score: 28.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 60..91
e-value: 2.3E-4
score: 19.1
coord: 157..187
e-value: 3.5E-7
score: 28.0
coord: 11..39
e-value: 1.2E-6
score: 26.3
coord: 95..121
e-value: 4.9E-6
score: 24.4
coord: 244..277
e-value: 7.3E-6
score: 23.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 58..92
score: 10.238
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..123
score: 9.799
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 320..354
score: 5.546
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 241..275
score: 11.224
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..189
score: 11.257
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..39
score: 10.709
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 239..288
coord: 4..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1220contigF-serratus_M_contig1220:59173..60330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1220.1714.1mRNA_F-serratus_M_contig1220.1714.1Fucus serratus malemRNAF-serratus_M_contig1220 59142..60744 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1220.1714.1 ID=prot_F-serratus_M_contig1220.1714.1|Name=mRNA_F-serratus_M_contig1220.1714.1|organism=Fucus serratus male|type=polypeptide|length=386bp
MREAGVAPDAISFNSAIAGYAKTGRWKKALSLLKEMESSQGAGGTEADAA
ATIRISPDEFSYSSAIVACGKGGEWSLAVGLLDTMRRKGIRQSTVAYNAA
IKACGDAGQWERALELLREMQAVQTGGPTQTVQADGSAPPAERLAAMVAS
VPFPDTVSYNAAIKACGDAGEWEHAVALLEEMRRRNFGNKTCAKGIGGFK
GERLDGRCDAAPQVGVADPDGDAVGRGEAGSSPSRLRPSPDATSYSMAVS
ACSRAGNADGALGLLEVMRQDGFSPDSVTFASAIEVCDRGCGRAHEEAPQ
APLLLAALIDRMRSSTVPSSAPCYARALEACADAGLCERGRSLMDDVVAE
KVGVERKSVDRRRAGVRLRAALFQASAGGPAGLKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat