mRNA_F-serratus_M_contig122.1710.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig122.1710.1
Unique NamemRNA_F-serratus_M_contig122.1710.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.320e-33
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:   76 DQMWPPY---------------LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA 375
              +W PY               +LLAGVVVFI+PNTAAQIA TL +A  F+ VSE LAP+ S+WDAW++R+GH +VFV++Y+ALLLKVDVSGE   SQ+ +E+V+VA H CMILA
Sbjct: 1110 SDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILA 1224
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.450e-33
Identity = 68/114 (59.65%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:   76 DQMWPPY---------------LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMIL 372
             ++W PY               +LLAGVVVFIYPNTA QIA TL +A  F+ VSE LAPY S+WD W+SR GHA+VFV++YVALLLKVDVS E   SQ+ FEVV+VA H CMIL
Sbjct: 1921 SELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMIL 2034
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.350e-31
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   97 LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA 375
            +LL G+VVF+YPNTAAQIA TL +  VF  +SEAL P    WD W+SR  HA+VF+++YVALLLKVDVS E  SSQK FE V+VA H CM+LA
Sbjct:   32 ILLTGLVVFMYPNTAAQIAITLIMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLA 124
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 9.130e-31
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   76 DQMWPPY---------------LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMIL 372
              +W PY               +LLAGVVVFIYPNTAAQIA TL IA  F  +SE LAPY S+WD WISR GH +VF+++YVALLLKVDVS E  SSQ+ FE V+VA H CMIL
Sbjct: 1366 SNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMIL 1479
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.220e-30
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:   76 DQMWPPY---------------LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA 375
              +W PY               +LL G+VVFIYPNTAAQIA TL +  VF  +SEAL PY   WD W+SR  HA+VF+++YVALLLKVDVS E  SSQK FE V+VA H CMILA
Sbjct:  871 SNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 985
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.270e-30
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:   76 DQMWPPY---------------LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA 375
              +W PY               +LL G+VVFIYPNTAAQIA TL +  VF  +SEAL PY   WD W+SR  HA+VF+++YVALLLKVDVS E  SSQK FE V+VA H CMILA
Sbjct: 2609 SNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 2723
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.430e-30
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   97 LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMIL 372
            +LLAGVVVFIYP+TAAQIA TL IA  F+ VSE L+PY S+WD W++R GH +VFV+++VALLLKVDV+ E+ SSQK FE V+VA H CM+L
Sbjct:  574 VLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVL 665
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.100e-30
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   97 LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMI 369
            +LLAGVVVFIYPNTAAQIA  L IA VF  +SEALAPY S+WD W+ R GHA+V V++YVALLLKVDVS E  SSQ+ FE ++VA H CM+
Sbjct:  853 VLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMV 943
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BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.050e-28
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   97 LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMI 369
            +L AGVVVFIYPNTAAQIA  L +A VF  +SE +APY S+WD W+ R GHA+V V++YVALLLKVDVS E  SSQ+ FE + VA H CM+
Sbjct:  571 VLRAGVVVFIYPNTAAQIAVALPMAVVFAMISEPVAPYVSRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLFVAAHVCMV 661
[Close]
BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.150e-27
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   97 LLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAWISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA 375
            +LLAGVVVFIYPNTAAQIA TL IA  F+ VSEAL PY S WD WI+R GH +VF ++++ LLLKV+VS E+ +SQ+ FE+V+VA H  M++A
Sbjct: 1499 VLLAGVVVFIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLVAVHALMVMA 1591
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig122.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G301_ECTSI6.320e-3356.52Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G5Y7_ECTSI6.450e-3359.65Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KP34_9PHAE2.350e-3163.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE9.130e-3159.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHH1_ECTSI1.220e-3056.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.270e-3056.52LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LH65_ECTSI1.430e-3066.30Polymorphic outer membrane protein G/I family prot... [more]
D7G2Z8_ECTSI3.100e-3068.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3R8_9PHAE8.050e-2863.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI5_ECTSI1.150e-2762.37Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig122contigF-serratus_M_contig122:472729..473103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.1e-28
Seed eggNOG ortholog2880.D7G301
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size294
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.3300254-UTR-F-serratus_M_contig122:472728..4728091622929138.3300254-UTR-F-serratus_M_contig122:472728..472809Fucus serratus maleUTRF-serratus_M_contig122 472729..472809 +
1690962720.8668478-UTR-F-serratus_M_contig122:472728..4728091690962720.8668478-UTR-F-serratus_M_contig122:472728..472809Fucus serratus maleUTRF-serratus_M_contig122 472729..472809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.3421938-CDS-F-serratus_M_contig122:472809..4731031622929138.3421938-CDS-F-serratus_M_contig122:472809..473103Fucus serratus maleCDSF-serratus_M_contig122 472810..473103 +
1690962720.8776171-CDS-F-serratus_M_contig122:472809..4731031690962720.8776171-CDS-F-serratus_M_contig122:472809..473103Fucus serratus maleCDSF-serratus_M_contig122 472810..473103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig122.1710.1prot_F-serratus_M_contig122.1710.1Fucus serratus malepolypeptideF-serratus_M_contig122 472810..473103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig122.1710.1

>prot_F-serratus_M_contig122.1710.1 ID=prot_F-serratus_M_contig122.1710.1|Name=mRNA_F-serratus_M_contig122.1710.1|organism=Fucus serratus male|type=polypeptide|length=98bp
MWPPYLLLAGVVVFIYPNTAAQIAATLAIATVFIFVSEALAPYYSQWDAW
ISRSGHAIVFVTIYVALLLKVDVSGENTSSQKTFEVVIVAGHGCMILA
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mRNA from alignment at F-serratus_M_contig122:472729..473103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig122.1710.1 ID=mRNA_F-serratus_M_contig122.1710.1|Name=mRNA_F-serratus_M_contig122.1710.1|organism=Fucus serratus male|type=mRNA|length=375bp|location=Sequence derived from alignment at F-serratus_M_contig122:472729..473103+ (Fucus serratus male)
AGAGGAATCCAATGTAGCGAGGCTGACCTCGGATCTGTGGAAGCCCTATA
AGCCTCACAGATTCTATTATGAGGTGATCAAATGTGGCCGCCGTATCTCT
TGCTGGCCGGAGTTGTGGTGTTCATTTACCCTAATACCGCGGCTCAGATT
GCTGCTACTCTGGCGATTGCTACCGTGTTTATCTTCGTGTCAGAAGCTTT
GGCACCGTATTATTCGCAATGGGATGCCTGGATCAGTCGCTCAGGCCATG
CGATTGTTTTTGTAACCATATACGTAGCTCTGTTGCTGAAGGTCGACGTG
TCCGGCGAGAATACCTCAAGTCAGAAGACGTTTGAGGTGGTTATAGTGGC
TGGTCATGGGTGCATGATCCTTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig122:472729..473103+

>mRNA_F-serratus_M_contig122.1710.1 ID=mRNA_F-serratus_M_contig122.1710.1|Name=mRNA_F-serratus_M_contig122.1710.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig122:472729..473103+ (Fucus serratus male)
ATGTGGCCGCCGTATCTCTTGCTGGCCGGAGTTGTGGTGTTCATTTACCC
TAATACCGCGGCTCAGATTGCTGCTACTCTGGCGATTGCTACCGTGTTTA
TCTTCGTGTCAGAAGCTTTGGCACCGTATTATTCGCAATGGGATGCCTGG
ATCAGTCGCTCAGGCCATGCGATTGTTTTTGTAACCATATACGTAGCTCT
GTTGCTGAAGGTCGACGTGTCCGGCGAGAATACCTCAAGTCAGAAGACGT
TTGAGGTGGTTATAGTGGCTGGTCATGGGTGCATGATCCTTGCGATGTGG
CCGCCGTATCTCTTGCTGGCCGGAGTTGTGGTGTTCATTTACCCTAATAC
CGCGGCTCAGATTGCTGCTACTCTGGCGATTGCTACCGTGTTTATCTTCG
TGTCAGAAGCTTTGGCACCGTATTATTCGCAATGGGATGCCTGGATCAGT
CGCTCAGGCCATGCGATTGTTTTTGTAACCATATACGTAGCTCTGTTGCT
GAAGGTCGACGTGTCCGGCGAGAATACCTCAAGTCAGAAGACGTTTGAGG
TGGTTATAGTGGCTGGTCATGGGTGCATGATCCTTGCG
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