mRNA_F-serratus_M_contig122.1709.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig122.1709.1
Unique NamemRNA_F-serratus_M_contig122.1709.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.480e-29
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            CSVC + +  SL FTC EC D    I I  V  V V   A+A+  +LVS +   A RG++  V +R+P+ S+KI++VVWQILTQF+SV  VT+P VY   LDGV+ LNFD+ WI +AGC +E+DF
Sbjct: 1364 CSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDF 1488          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.660e-27
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            CS+C   + + L F C EC DS   II+A+   V+   VA+A+ SY+VS K     RG ++ + + IP+ S KI++V WQILTQFT+V  VT+P VY   LDG+   NFDL+W+++AGC + +DF
Sbjct: 1656 CSICSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDF 1780          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.080e-26
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C+VC   + + L F C  C      I +A V  V+V  VA A+ SY +S +  +   G++  + Q IP+ SVKI+IV WQILTQFTSV  VT+P VY   LDG+D  NFDL+W+++AGC  +IDF
Sbjct:  845 CAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDF 969          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.210e-26
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C+VC     +   FTCREC DS   I++A    V     A+ + SY+ S K    G+GI++ V   IP+ SVKI++V WQ++TQFT V  +T+P VY T LDG+   NFDL WI++AGC  ++DF
Sbjct: 1009 CAVCSHGFSAQFGFTCRECSDSAGGIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQGIVERVALYIPLQSVKIVVVAWQVVTQFTVVANITYPDVYQTFLDGLKLFNFDLGWILSAGCVTDVDF 1133          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.470e-25
Identity = 52/125 (41.60%), Postives = 85/125 (68.00%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C++C + + + + FTCR C D+   I +A    V+   + +A+ SY+ S +    GRGI++ V + IP+ SVKI++V WQI+TQFT+V  VT+P VY   L+G++  NFDL+W+++AGC +++DF
Sbjct: 1200 CAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDF 1324          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.070e-24
Identity = 56/127 (44.09%), Postives = 85/127 (66.93%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYD-SVVVIIIATVFTVLVAAVALAMFSYLVSVK-GVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C +C   +   L F C +C + S   I +A V  +L+  +A+A+ SY+ S + G+    GI++ VT+ IP+ S+KI+IV WQILTQFTSV  VT+P VY  LLD +D  NFDL+W+++AGC ++++F
Sbjct: 1099 CGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNF 1225          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.940e-21
Identity = 46/125 (36.80%), Postives = 79/125 (63.20%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C++C  ++ + L FTC +C +    I++AT   V+     +A+ SY+      N G  +   + + +P+ ++KI++V WQI+TQFTS   VT+P VY   L+G+D  NFD++W+++AGC M++DF
Sbjct:  606 CAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDF 730          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.940e-21
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            C+VC   + + L   C +C D    I +    +V      +A+ SY VS +     RG+++   + +P+ SVKI+IV WQILTQFTSV  + FP VY   LD ++  NFDL W+++AGC  ++DF
Sbjct:  566 CAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDF 690          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 3
Query:    9 FADCSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVN--AGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            + DC+VC      SL FTC  C D    ++      ++V  + L +  Y+VS +        G    + Q +P+ S+KI+IVVWQILT+  SV TV+FP VY   LDG  FL FD  W+++AGCF+ IDF
Sbjct:  810 YEDCAVCSDGFAESLSFTCSNCSDGKATVVALVALPIMVM-LGLILLVYMVSNERNRDAPSAGPWHRLKQLLPLQSLKIMIVVWQILTELASVATVSFPDVYERFLDGAAFLGFDFGWMLSAGCFVNIDF 938          
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-18
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
            CS+C   + S+L ++C +C+     I+ A    VL   VA+ +  Y++S +       +++ +   +P+ SVKI+IV WQILTQF S   V +P VY   LDG+    FDL W+++AGC +++ F
Sbjct: 1016 CSICSDGYASNLGYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQFASAANVVYPGVYQQFLDGLKVFGFDLGWLMSAGCVLDMGF 1140          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY65_9PHAE2.480e-2950.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI6.660e-2745.60Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G301_ECTSI3.080e-2646.40Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI4.210e-2644.80Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI1.470e-2541.60Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K0E9_9PHAE6.070e-2444.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHH1_ECTSI2.940e-2136.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Z8_ECTSI2.940e-2139.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLP6_9PHAE1.030e-2040.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI2.030e-1836.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig122contigF-serratus_M_contig122:471406..472338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig122.1709.1prot_F-serratus_M_contig122.1709.1Fucus serratus malepolypeptideF-serratus_M_contig122 471476..472290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.2226102-UTR-F-serratus_M_contig122:471405..4714751622929138.2226102-UTR-F-serratus_M_contig122:471405..471475Fucus serratus maleUTRF-serratus_M_contig122 471406..471475 +
1690962720.8018634-UTR-F-serratus_M_contig122:471405..4714751690962720.8018634-UTR-F-serratus_M_contig122:471405..471475Fucus serratus maleUTRF-serratus_M_contig122 471406..471475 +
1622929138.2584574-UTR-F-serratus_M_contig122:472290..4723381622929138.2584574-UTR-F-serratus_M_contig122:472290..472338Fucus serratus maleUTRF-serratus_M_contig122 472291..472338 +
1690962720.837507-UTR-F-serratus_M_contig122:472290..4723381690962720.837507-UTR-F-serratus_M_contig122:472290..472338Fucus serratus maleUTRF-serratus_M_contig122 472291..472338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.2361422-CDS-F-serratus_M_contig122:471475..4716741622929138.2361422-CDS-F-serratus_M_contig122:471475..471674Fucus serratus maleCDSF-serratus_M_contig122 471476..471674 +
1690962720.8103266-CDS-F-serratus_M_contig122:471475..4716741690962720.8103266-CDS-F-serratus_M_contig122:471475..471674Fucus serratus maleCDSF-serratus_M_contig122 471476..471674 +
1622929138.248213-CDS-F-serratus_M_contig122:472213..4722901622929138.248213-CDS-F-serratus_M_contig122:472213..472290Fucus serratus maleCDSF-serratus_M_contig122 472214..472290 +
1690962720.8184347-CDS-F-serratus_M_contig122:472213..4722901690962720.8184347-CDS-F-serratus_M_contig122:472213..472290Fucus serratus maleCDSF-serratus_M_contig122 472214..472290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig122.1709.1

>prot_F-serratus_M_contig122.1709.1 ID=prot_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MLRQRGGHYNCHRVHRAGRSGRISNVFVPGVREGSKCRTRDNGLRDATYT
NALGEDYYRRMADLDAVYFSGHRDFPERVLDTFGWRGLSQL*
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mRNA from alignment at F-serratus_M_contig122:471406..472338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig122.1709.1 ID=mRNA_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=mRNA|length=933bp|location=Sequence derived from alignment at F-serratus_M_contig122:471406..472338+ (Fucus serratus male)
GGTGTTTGTTCGCAGATTGCTCTGTCTGCGGCAAGAATCACGTGTCCAGC TTACGTTTTACCTGCCGGGAATGCTACGACAGCGTGGTGGTCATTATAAT TGCCACCGTGTTCACCGTGCTGGTCGCAGCGGTCGCATTAGCAATGTTTT CGTACCTGGTGTCCGTGAAGGGAGTAAATGCCGGACGAGGGATAATGGAC TGCGTGACGCAACGTATACCAATGCACTCGGTGAAGATTATTATCGTCGT ATGGCAGATCTTGACGCAGGTGAGAACCTTCAATAGATGCCGAGCTTGCA GTGCCAAGATATAGCTTGTGACTTGAGCTGACCCACTGATGATGTACATC ACAAAATTTATACAGTATACATGATATTGAAGCAGTACCCGCAGAGCTTA TTAAGAGGAAACGTTCTAACACCCTAAATGAGACGCCGGAGTGAACACCC CCCTCTTGCTTCATGGAGGGGGATGTTCAGGGACATTGTACTTGTCGGTC ACGAGGGAAGGACCAATTGGTTATCGGCTACTTGGCGAGTTTTCACCTCG AGCGGTACCCGTGTGGGCTTCCCTGCGGAGCGTGGTACTTAATGTCAAAC AAATGACAAAACAAACCTATGGCTGCCGTTGCTACTGTTGCAGTATCACT AGTGCTCTCTTCTATGGTCACGACGATACAACCGGTGACAACTGGTTGGC TATTTTCAATCACGACGTGTGAATTTCCTAGTTTATGTGCCTTATTTAAC AGTGGCTTACATATTGGTGCATGTTCTTCCTCGCCCTTATTTGCAACAAC CCATGAAGTTTACTTCAGTGGTCACCGTGACTTTCCCGAGCGTGTACTAG ACACTTTTGGATGGCGTGGACTTTCTCAACTTTGACTTGACCTGGATCGT GGCGGCCGGGTGCTTCATGGAAATCGACTTCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig122:471406..472338+

>mRNA_F-serratus_M_contig122.1709.1 ID=mRNA_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig122:471406..472338+ (Fucus serratus male)
ATGCTACGACAGCGTGGTGGTCATTATAATTGCCACCGTGTTCACCGTGC
TGGTCGCAGCGGTCGCATTAGCAATGTTTTCGTACCTGGTGTCCGTGAAG
GGAGTAAATGCCGGACGAGGGATAATGGACTGCGTGACGCAACGTATACC
AATGCACTCGGTGAAGATTATTATCGTCGTATGGCAGATCTTGACGCAGA
TGCTACGACAGCGTGGTGGTCATTATAATTGCCACCGTGTTCACCGTGCT
GGTCGCAGCGGTCGCATTAGCAATGTTTTCGTACCTGGTGTCCGTGAAGG
GAGTAAATGCCGGACGAGGGATAATGGACTGCGTGACGCAACGTATACCA
ATGCACTCGGTGAAGATTATTATCGTCGTATGGCAGATCTTGACGCAGTT
TACTTCAGTGGTCACCGTGACTTTCCCGAGCGTGTACTAGACACTTTTGG
ATGGCGTGGACTTTCTCAACTTTGATTTACTTCAGTGGTCACCGTGACTT
TCCCGAGCGTGTACTAGACACTTTTGGATGGCGTGGACTTTCTCAACTTT
GA
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