mRNA_F-serratus_M_contig122.1709.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.480e-29 Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
CSVC + + SL FTC EC D I I V V V A+A+ +LVS + A RG++ V +R+P+ S+KI++VVWQILTQF+SV VT+P VY LDGV+ LNFD+ WI +AGC +E+DF
Sbjct: 1364 CSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDF 1488
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 114 bits (285), Expect = 6.660e-27 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
CS+C + + L F C EC DS II+A+ V+ VA+A+ SY+VS K RG ++ + + IP+ S KI++V WQILTQFT+V VT+P VY LDG+ NFDL+W+++AGC + +DF
Sbjct: 1656 CSICSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDF 1780
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 112 bits (280), Expect = 3.080e-26 Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C+VC + + L F C C I +A V V+V VA A+ SY +S + + G++ + Q IP+ SVKI+IV WQILTQFTSV VT+P VY LDG+D NFDL+W+++AGC +IDF
Sbjct: 845 CAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDF 969
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 112 bits (279), Expect = 4.210e-26 Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C+VC + FTCREC DS I++A V A+ + SY+ S K G+GI++ V IP+ SVKI++V WQ++TQFT V +T+P VY T LDG+ NFDL WI++AGC ++DF
Sbjct: 1009 CAVCSHGFSAQFGFTCRECSDSAGGIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQGIVERVALYIPLQSVKIVVVAWQVVTQFTVVANITYPDVYQTFLDGLKLFNFDLGWILSAGCVTDVDF 1133
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.470e-25 Identity = 52/125 (41.60%), Postives = 85/125 (68.00%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C++C + + + + FTCR C D+ I +A V+ + +A+ SY+ S + GRGI++ V + IP+ SVKI++V WQI+TQFT+V VT+P VY L+G++ NFDL+W+++AGC +++DF
Sbjct: 1200 CAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDF 1324
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 105 bits (263), Expect = 6.070e-24 Identity = 56/127 (44.09%), Postives = 85/127 (66.93%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYD-SVVVIIIATVFTVLVAAVALAMFSYLVSVK-GVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C +C + L F C +C + S I +A V +L+ +A+A+ SY+ S + G+ GI++ VT+ IP+ S+KI+IV WQILTQFTSV VT+P VY LLD +D NFDL+W+++AGC ++++F
Sbjct: 1099 CGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNF 1225
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.940e-21 Identity = 46/125 (36.80%), Postives = 79/125 (63.20%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C++C ++ + L FTC +C + I++AT V+ +A+ SY+ N G + + + +P+ ++KI++V WQI+TQFTS VT+P VY L+G+D NFD++W+++AGC M++DF
Sbjct: 606 CAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDF 730
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.940e-21 Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
C+VC + + L C +C D I + +V +A+ SY VS + RG+++ + +P+ SVKI+IV WQILTQFTSV + FP VY LD ++ NFDL W+++AGC ++DF
Sbjct: 566 CAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDF 690
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.030e-20 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 3
Query: 9 FADCSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVN--AGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
+ DC+VC SL FTC C D ++ ++V + L + Y+VS + G + Q +P+ S+KI+IVVWQILT+ SV TV+FP VY LDG FL FD W+++AGCF+ IDF
Sbjct: 810 YEDCAVCSDGFAESLSFTCSNCSDGKATVVALVALPIMVM-LGLILLVYMVSNERNRDAPSAGPWHRLKQLLPLQSLKIMIVVWQILTELASVATVSFPDVYERFLDGAAFLGFDFGWMLSAGCFVNIDF 938
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.030e-18 Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 3
Query: 18 CSVCGKNHVSSLRFTCRECYDSVVVIIIATVFTVLVAAVALAMFSYLVSVKGVNAGRGIMDCVTQRIPMHSVKIIIVVWQILTQFTSVVTVTFPSVY*TLLDGVDFLNFDLTWIVAAGCFMEIDF 392
CS+C + S+L ++C +C+ I+ A VL VA+ + Y++S + +++ + +P+ SVKI+IV WQILTQF S V +P VY LDG+ FDL W+++AGC +++ F
Sbjct: 1016 CSICSDGYASNLGYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQFASAANVVYPGVYQQFLDGLKVFGFDLGWLMSAGCVLDMGF 1140 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig122.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig122.1709.1 >prot_F-serratus_M_contig122.1709.1 ID=prot_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=polypeptide|length=92bp MLRQRGGHYNCHRVHRAGRSGRISNVFVPGVREGSKCRTRDNGLRDATYTback to top mRNA from alignment at F-serratus_M_contig122:471406..472338+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig122.1709.1 ID=mRNA_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=mRNA|length=933bp|location=Sequence derived from alignment at F-serratus_M_contig122:471406..472338+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig122:471406..472338+ >mRNA_F-serratus_M_contig122.1709.1 ID=mRNA_F-serratus_M_contig122.1709.1|Name=mRNA_F-serratus_M_contig122.1709.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig122:471406..472338+ (Fucus serratus male)back to top |