mRNA_F-serratus_M_contig121.1639.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig121.1639.1
Unique NamemRNA_F-serratus_M_contig121.1639.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig121.1639.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.850e-28
Identity = 68/154 (44.16%), Postives = 91/154 (59.09%), Query Frame = 1 
Query:    4 TNVQDILRVVALSGLIRPEEVDLVCLNVCNACRES-VRYAITVNIHNAPN-SLSPKYDSGTRSE--------------------RRTRLKHVRRISRLNFRMNVPLTEIVWPDDLHELKFGWVFNQPLESALPSSLLSLELGGSFNHHVEEVIW 399
            T    +LRVV LSG++ P EV+LVCL++CNACRES   Y++ V   N    S S + D G  S                       +R+   RRISRL FR+++PL+++VWP+ L  LKFGW F+ PL+  LP SL+ L LGG+FNHH+E V W
Sbjct:    4 TRAAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVRLVSPSRRQDEGGASSPLPLCGGDINSDSAVPVIPAENSRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTW 157
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig121.1639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE3.850e-2844.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig121contigF-serratus_M_contig121:62931..63782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size852
Cds size852
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.887567-CDS-F-serratus_M_contig121:62930..637821622929124.887567-CDS-F-serratus_M_contig121:62930..63782Fucus serratus maleCDSF-serratus_M_contig121 62931..63782 -
1690962715.3361764-CDS-F-serratus_M_contig121:62930..637821690962715.3361764-CDS-F-serratus_M_contig121:62930..63782Fucus serratus maleCDSF-serratus_M_contig121 62931..63782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig121.1639.1prot_F-serratus_M_contig121.1639.1Fucus serratus malepolypeptideF-serratus_M_contig121 62931..63782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig121.1639.1

>prot_F-serratus_M_contig121.1639.1 ID=prot_F-serratus_M_contig121.1639.1|Name=mRNA_F-serratus_M_contig121.1639.1|organism=Fucus serratus male|type=polypeptide|length=284bp
MTNVQDILRVVALSGLIRPEEVDLVCLNVCNACRESVRYAITVNIHNAPN
SLSPKYDSGTRSERRTRLKHVRRISRLNFRMNVPLTEIVWPDDLHELKFG
WVFNQPLESALPSSLLSLELGGSFNHHVEEVIWPSQLVKLRFGVRFNRPI
ELAAWPLTLRSLTFGLSFNQPIEMVKWPTALEYLALGDAFNHPVKATAWR
ATNLKKLEFGMAFRHPIDGMAWPEDLETLKLGACFDQALDSQELPRGLKV
LHLPDLYEMDGGDHTFRAGLPSLCKIEIHDVVL*
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mRNA from alignment at F-serratus_M_contig121:62931..63782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig121.1639.1 ID=mRNA_F-serratus_M_contig121.1639.1|Name=mRNA_F-serratus_M_contig121.1639.1|organism=Fucus serratus male|type=mRNA|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig121:62931..63782- (Fucus serratus male)
ATGACCAATGTCCAAGATATTTTACGTGTGGTGGCGCTTTCTGGCCTTAT
CCGCCCAGAAGAGGTTGATCTCGTGTGTCTGAACGTTTGCAACGCCTGTC
GAGAGAGTGTGAGATACGCGATCACCGTCAACATTCATAACGCCCCTAAC
AGCCTTTCGCCGAAGTATGACTCGGGCACCCGCTCGGAACGAAGGACGCG
GTTGAAGCATGTTCGGCGAATCTCGCGACTGAATTTCCGTATGAACGTCC
CGCTTACGGAGATTGTCTGGCCCGACGATCTCCACGAACTGAAGTTCGGC
TGGGTGTTTAACCAACCCCTCGAATCTGCGTTGCCCAGTTCGCTTCTGTC
CTTGGAACTCGGTGGAAGCTTCAATCATCACGTCGAGGAGGTCATTTGGC
CAAGCCAACTCGTCAAGCTGCGGTTTGGGGTACGCTTCAACCGTCCGATA
GAGCTCGCTGCGTGGCCTTTGACTCTGCGGAGCCTAACCTTCGGGTTGTC
TTTCAACCAACCCATCGAGATGGTGAAATGGCCAACGGCTCTCGAGTATC
TTGCCCTGGGCGACGCCTTCAATCATCCCGTGAAGGCGACTGCATGGCGT
GCAACCAACTTGAAGAAGCTGGAGTTCGGGATGGCGTTCCGCCACCCAAT
CGACGGCATGGCGTGGCCAGAGGACCTGGAAACGCTCAAGCTTGGGGCTT
GTTTCGATCAAGCCCTCGATTCGCAAGAGCTTCCACGGGGCCTCAAAGTC
CTACATCTGCCAGACTTGTACGAAATGGACGGTGGAGATCACACTTTCAG
GGCAGGCTTGCCCAGTCTCTGCAAGATTGAGATACATGATGTCGTCTTGT
GA
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Coding sequence (CDS) from alignment at F-serratus_M_contig121:62931..63782-

>mRNA_F-serratus_M_contig121.1639.1 ID=mRNA_F-serratus_M_contig121.1639.1|Name=mRNA_F-serratus_M_contig121.1639.1|organism=Fucus serratus male|type=CDS|length=1704bp|location=Sequence derived from alignment at F-serratus_M_contig121:62931..63782- (Fucus serratus male)
ATGACCAATGTCCAAGATATTTTACGTGTGGTGGCGCTTTCTGGCCTTAT
CCGCCCAGAAGAGGTTGATCTCGTGTGTCTGAACGTTTGCAACGCCTGTC
GAGAGAGTGTGAGATACGCGATCACCGTCAACATTCATAACGCCCCTAAC
AGCCTTTCGCCGAAGTATGACTCGGGCACCCGCTCGGAACGAAGGACGCG
GTTGAAGCATGTTCGGCGAATCTCGCGACTGAATTTCCGTATGAACGTCC
CGCTTACGGAGATTGTCTGGCCCGACGATCTCCACGAACTGAAGTTCGGC
TGGGTGTTTAACCAACCCCTCGAATCTGCGTTGCCCAGTTCGCTTCTGTC
CTTGGAACTCGGTGGAAGCTTCAATCATCACGTCGAGGAGGTCATTTGGC
CAAGCCAACTCGTCAAGCTGCGGTTTGGGGTACGCTTCAACCGTCCGATA
GAGCTCGCTGCGTGGCCTTTGACTCTGCGGAGCCTAACCTTCGGGTTGTC
TTTCAACCAACCCATCGAGATGGTGAAATGGCCAACGGCTCTCGAGTATC
TTGCCCTGGGCGACGCCTTCAATCATCCCGTGAAGGCGACTGCATGGCGT
GCAACCAACTTGAAGAAGCTGGAGTTCGGGATGGCGTTCCGCCACCCAAT
CGACGGCATGGCGTGGCCAGAGGACCTGGAAACGCTCAAGCTTGGGGCTT
GTTTCGATCAAGCCCTCGATTCGCAAGAGCTTCCACGGGGCCTCAAAGTC
CTACATCTGCCAGACTTGTACGAAATGGACGGTGGAGATCACACTTTCAG
GGCAGGCTTGCCCAGTCTCTGCAAGATTGAGATACATGATGTCGTCTTGT
GAATGACCAATGTCCAAGATATTTTACGTGTGGTGGCGCTTTCTGGCCTT
ATCCGCCCAGAAGAGGTTGATCTCGTGTGTCTGAACGTTTGCAACGCCTG
TCGAGAGAGTGTGAGATACGCGATCACCGTCAACATTCATAACGCCCCTA
ACAGCCTTTCGCCGAAGTATGACTCGGGCACCCGCTCGGAACGAAGGACG
CGGTTGAAGCATGTTCGGCGAATCTCGCGACTGAATTTCCGTATGAACGT
CCCGCTTACGGAGATTGTCTGGCCCGACGATCTCCACGAACTGAAGTTCG
GCTGGGTGTTTAACCAACCCCTCGAATCTGCGTTGCCCAGTTCGCTTCTG
TCCTTGGAACTCGGTGGAAGCTTCAATCATCACGTCGAGGAGGTCATTTG
GCCAAGCCAACTCGTCAAGCTGCGGTTTGGGGTACGCTTCAACCGTCCGA
TAGAGCTCGCTGCGTGGCCTTTGACTCTGCGGAGCCTAACCTTCGGGTTG
TCTTTCAACCAACCCATCGAGATGGTGAAATGGCCAACGGCTCTCGAGTA
TCTTGCCCTGGGCGACGCCTTCAATCATCCCGTGAAGGCGACTGCATGGC
GTGCAACCAACTTGAAGAAGCTGGAGTTCGGGATGGCGTTCCGCCACCCA
ATCGACGGCATGGCGTGGCCAGAGGACCTGGAAACGCTCAAGCTTGGGGC
TTGTTTCGATCAAGCCCTCGATTCGCAAGAGCTTCCACGGGGCCTCAAAG
TCCTACATCTGCCAGACTTGTACGAAATGGACGGTGGAGATCACACTTTC
AGGGCAGGCTTGCCCAGTCTCTGCAAGATTGAGATACATGATGTCGTCTT
GTGA
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