mRNA_F-serratus_M_contig1186.1467.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1186.1467.1
Unique NamemRNA_F-serratus_M_contig1186.1467.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1186.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1186contigF-serratus_M_contig1186:82515..82997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D7FZZ7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size483
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.820732-UTR-F-serratus_M_contig1186:82514..825321622929086.820732-UTR-F-serratus_M_contig1186:82514..82532Fucus serratus maleUTRF-serratus_M_contig1186 82515..82532 +
1690962699.0172358-UTR-F-serratus_M_contig1186:82514..825321690962699.0172358-UTR-F-serratus_M_contig1186:82514..82532Fucus serratus maleUTRF-serratus_M_contig1186 82515..82532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8435721-CDS-F-serratus_M_contig1186:82532..829971622929086.8435721-CDS-F-serratus_M_contig1186:82532..82997Fucus serratus maleCDSF-serratus_M_contig1186 82533..82997 +
1690962699.0285676-CDS-F-serratus_M_contig1186:82532..829971690962699.0285676-CDS-F-serratus_M_contig1186:82532..82997Fucus serratus maleCDSF-serratus_M_contig1186 82533..82997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1186.1467.1prot_F-serratus_M_contig1186.1467.1Fucus serratus malepolypeptideF-serratus_M_contig1186 82533..82997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1186.1467.1

>prot_F-serratus_M_contig1186.1467.1 ID=prot_F-serratus_M_contig1186.1467.1|Name=mRNA_F-serratus_M_contig1186.1467.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MLSLGRLVDCSRSLGQVNEAKEWQQKQRKALALAITRVSKYSQIDTKYAT
ELTLPGLVITGNDPGRNSDAEDFLRRALEIQQQMLGRENVSVVYALDNLG
RHLHEVGKYDEAEEVLRQALELMEVKLGTKNLQVVNTLCELGECLRKAKR
YDEAE
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mRNA from alignment at F-serratus_M_contig1186:82515..82997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1186.1467.1 ID=mRNA_F-serratus_M_contig1186.1467.1|Name=mRNA_F-serratus_M_contig1186.1467.1|organism=Fucus serratus male|type=mRNA|length=483bp|location=Sequence derived from alignment at F-serratus_M_contig1186:82515..82997+ (Fucus serratus male)
GTGGACAGCCCATTAGCCATGTTGAGTTTAGGGCGTCTGGTGGATTGTTC
GAGGAGCCTCGGTCAGGTCAACGAAGCAAAGGAATGGCAGCAAAAGCAGC
GCAAAGCACTTGCTCTGGCAATTACACGGGTCTCGAAATACTCTCAAATC
GATACCAAGTATGCTACGGAATTAACGTTGCCGGGCTTGGTTATAACCGG
AAATGACCCTGGCAGAAATAGCGATGCAGAAGACTTTCTAAGGCGTGCAT
TAGAGATCCAGCAACAAATGCTGGGCAGGGAAAATGTAAGCGTAGTATAT
GCCTTGGACAACCTTGGAAGGCATCTCCACGAGGTCGGGAAGTATGACGA
GGCGGAGGAGGTGTTGAGGCAGGCTTTAGAACTCATGGAGGTGAAACTGG
GCACGAAGAATCTCCAGGTTGTAAATACGCTGTGCGAGCTCGGAGAGTGC
CTGCGGAAAGCAAAGCGGTACGACGAGGCGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1186:82515..82997+

>mRNA_F-serratus_M_contig1186.1467.1 ID=mRNA_F-serratus_M_contig1186.1467.1|Name=mRNA_F-serratus_M_contig1186.1467.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig1186:82515..82997+ (Fucus serratus male)
ATGTTGAGTTTAGGGCGTCTGGTGGATTGTTCGAGGAGCCTCGGTCAGGT
CAACGAAGCAAAGGAATGGCAGCAAAAGCAGCGCAAAGCACTTGCTCTGG
CAATTACACGGGTCTCGAAATACTCTCAAATCGATACCAAGTATGCTACG
GAATTAACGTTGCCGGGCTTGGTTATAACCGGAAATGACCCTGGCAGAAA
TAGCGATGCAGAAGACTTTCTAAGGCGTGCATTAGAGATCCAGCAACAAA
TGCTGGGCAGGGAAAATGTAAGCGTAGTATATGCCTTGGACAACCTTGGA
AGGCATCTCCACGAGGTCGGGAAGTATGACGAGGCGGAGGAGGTGTTGAG
GCAGGCTTTAGAACTCATGGAGGTGAAACTGGGCACGAAGAATCTCCAGG
TTGTAAATACGCTGTGCGAGCTCGGAGAGTGCCTGCGGAAAGCAAAGCGG
TACGACGAGGCGGAGATGTTGAGTTTAGGGCGTCTGGTGGATTGTTCGAG
GAGCCTCGGTCAGGTCAACGAAGCAAAGGAATGGCAGCAAAAGCAGCGCA
AAGCACTTGCTCTGGCAATTACACGGGTCTCGAAATACTCTCAAATCGAT
ACCAAGTATGCTACGGAATTAACGTTGCCGGGCTTGGTTATAACCGGAAA
TGACCCTGGCAGAAATAGCGATGCAGAAGACTTTCTAAGGCGTGCATTAG
AGATCCAGCAACAAATGCTGGGCAGGGAAAATGTAAGCGTAGTATATGCC
TTGGACAACCTTGGAAGGCATCTCCACGAGGTCGGGAAGTATGACGAGGC
GGAGGAGGTGTTGAGGCAGGCTTTAGAACTCATGGAGGTGAAACTGGGCA
CGAAGAATCTCCAGGTTGTAAATACGCTGTGCGAGCTCGGAGAGTGCCTG
CGGAAAGCAAAGCGGTACGACGAGGCGGAG
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