mRNA_F-serratus_M_contig1132.1179.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1132.1179.1
Unique NamemRNA_F-serratus_M_contig1132.1179.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.020e-20
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+  A I EELYV + DG   +  +V ++++ +YGL  +G  W  +    L+    E+ +ADPCVFR+   GKVV IIV+YVDD++ +   ++ E + L  LR + P+KDLGE + Y GC I
Sbjct:  852 AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGE-ELLTSLRKTLPVKDLGECTWYDGCAI 972          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.050e-20
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+  A I EELYV + DG   +  +V ++++ +YGL  +G  W  +    L+    E+ +ADPCVFR+   GKVV IIV+YVDD++ +   ++ E + L  LR + P+KDLGE + Y GC I
Sbjct: 1405 AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGE-ELLTSLRKTLPVKDLGECTWYDGCAI 1525          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 94.4 bits (233), Expect = 5.150e-20
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+L  ++ EE+Y+  P+GY D   +V RL+KT+YGL  +G  W ++F  +L      + +AD CV++R   G++  II V+VDDLL+ SET +D  +   +L + F +KDLGE    +G  I
Sbjct:  994 AYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEI 1114          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 92.8 bits (229), Expect = 1.360e-19
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+L  ++ EE+Y+  P+GY D   +V RL+KT+YGL  +G  W  +F  +L      + +AD CV++R   G++  II V+VDDLL+ SET +D  +   +L + F +KDLGE    +G  I
Sbjct:   87 AYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEI 207          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.270e-19
Identity = 46/122 (37.70%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+  A + EE+Y+ LPDG      +  ++++ +YGL  +G  W  +    LI    E+ + DPC+FR+   GKVV +IV+YVDD++ LS T+++  + L  L+  F +KDLG+ + Y GC I
Sbjct:  872 AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGKVVGLIVIYVDDIM-LSATEEEREELLASLQERFSVKDLGDCTWYDGCAI 992          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A2I0K810_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K810_PUNGR)

HSP 1 Score: 90.1 bits (222), Expect = 4.660e-19
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQ--VGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            AFL  D+ EE+Y+ELP+G+R    +  V RL+K++YGL  A   W KKF   ++  +  R+ +D CVF ++      +I+++YVDD+L++S       +  ++L  SF +KDLG     LG HI
Sbjct:   39 AFLHGDLEEEIYMELPEGFRVKGKEHLVCRLRKSLYGLKQAPRQWYKKFDSFMLSHDYTRTTSDHCVFVKQFSDGDFIILLLYVDDMLLVSHDMSKIAELKKELSKSFAMKDLGPAKQILGMHI 162          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.460e-18
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+  A + EE+++ LP G  D  +++G+ ++ +YGL  +G  W       L+    E+ +ADPCVFR+     VV+IIV+YVDD+LV +E+ +D  + L  L+  FP K+LGE   +  C I
Sbjct:  278 AYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLV-AESDEDCEELLASLKKKFPTKNLGECEWFHRCAI 398          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5ILH6_9HYME (CCHC-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5ILH6_9HYME)

HSP 1 Score: 90.1 bits (222), Expect = 1.490e-18
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPN---QVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            AFL  ++ +E+Y+E+PDG     N   +V +LQ+T+YGL  +  +W ++F  E+    LE+   +PC+F  +  GKV  ++V+YVDD+++ S  KQ   +  E L ++F +KDLGE S YLG  I
Sbjct:  161 AFLNGNLEDEIYMEIPDGLEIEGNNRSKVCKLQRTIYGLKTSPKIWNQRFTAEVKKLGLEKDIHEPCLFTWRKEGKVA-LLVLYVDDIILASNCKQRLQEIKETLCNTFEMKDLGEPSRYLGMEI 284          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A6H5J752_9HYME (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J752_9HYME)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-18
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPN---QVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            AFL  ++ +E+Y+E+PDG     N   +V +LQ+T+YGL  +  +W ++F  E+    LE+   +PC+F  +  GKV  ++V+YVDD+++ S  KQ   +  E L ++F +KDLGE S YLG  I
Sbjct:  710 AFLNGNLEDEIYMEIPDGLEIEGNNRSKVCKLQRTIYGLKTSPKIWNQRFTAEVKKLGLEKDIHEPCLFTWRKEGKVA-LLVLYVDDIILASNCKQRLQEIKETLCNTFEMKDLGEPSRYLGMEI 833          
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 86.7 bits (213), Expect = 2.040e-18
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    4 AFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGGELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISNYLGCHI 369
            A+L  D+ EE+Y+  P+G+ D    V RL KT+YGL  +G  W +K   +L     ++ +ADPCV+ ++  G+V  II V+VDDLL+ + + +   +   DL+  F + DLGE    +G  I
Sbjct:   87 AYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQ-IITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEI 207          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1132.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE2.020e-2040.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.050e-2040.98Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A284QR88_ARMOS5.150e-2039.34Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A284R853_ARMOS1.360e-1939.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK64_9PHAE3.270e-1937.70CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A2I0K810_PUNGR4.660e-1937.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE1.460e-1837.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5ILH6_9HYME1.490e-1839.20CCHC-type domain-containing protein n=1 Tax=Tricho... [more]
A0A6H5J752_9HYME1.530e-1839.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GXA0_9APHY2.040e-1836.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1132contigF-serratus_M_contig1132:188285..188653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog164328.Phyra80289
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929030.7012553-CDS-F-serratus_M_contig1132:188284..1886531622929030.7012553-CDS-F-serratus_M_contig1132:188284..188653Fucus serratus maleCDSF-serratus_M_contig1132 188285..188653 +
1690962674.729479-CDS-F-serratus_M_contig1132:188284..1886531690962674.729479-CDS-F-serratus_M_contig1132:188284..188653Fucus serratus maleCDSF-serratus_M_contig1132 188285..188653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1132.1179.1prot_F-serratus_M_contig1132.1179.1Fucus serratus malepolypeptideF-serratus_M_contig1132 188285..188653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1132.1179.1

>prot_F-serratus_M_contig1132.1179.1 ID=prot_F-serratus_M_contig1132.1179.1|Name=mRNA_F-serratus_M_contig1132.1179.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MAFLEADITEELYVELPDGYRDLPNQVGRLQKTMYGLMHAGLLWPKKFGG
ELIVKELERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHQAL
EDLRSSFPIKDLGEISNYLGCHI
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mRNA from alignment at F-serratus_M_contig1132:188285..188653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1132.1179.1 ID=mRNA_F-serratus_M_contig1132.1179.1|Name=mRNA_F-serratus_M_contig1132.1179.1|organism=Fucus serratus male|type=mRNA|length=369bp|location=Sequence derived from alignment at F-serratus_M_contig1132:188285..188653+ (Fucus serratus male)
ATGGCGTTTCTCGAGGCGGATATTACGGAGGAGCTCTACGTTGAGCTCCC CGACGGATATCGTGACTTGCCGAACCAGGTTGGACGACTACAGAAGACCA TGTACGGCCTGATGCACGCCGGACTGCTGTGGCCGAAGAAGTTCGGCGGA GAGTTGATAGTGAAGGAGTTAGAAAGGTCCCAAGCCGATCCCTGCGTGTT CCGGCGGAAACATCTAGGGAAGGTCGTCGTCATCATTGTGGTCTACGTTG ACGATCTACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCAGGCGCTG GAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGAA CTACCTGGGATGCCACATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1132:188285..188653+

>mRNA_F-serratus_M_contig1132.1179.1 ID=mRNA_F-serratus_M_contig1132.1179.1|Name=mRNA_F-serratus_M_contig1132.1179.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig1132:188285..188653+ (Fucus serratus male)
ATGGCGTTTCTCGAGGCGGATATTACGGAGGAGCTCTACGTTGAGCTCCC
CGACGGATATCGTGACTTGCCGAACCAGGTTGGACGACTACAGAAGACCA
TGTACGGCCTGATGCACGCCGGACTGCTGTGGCCGAAGAAGTTCGGCGGA
GAGTTGATAGTGAAGGAGTTAGAAAGGTCCCAAGCCGATCCCTGCGTGTT
CCGGCGGAAACATCTAGGGAAGGTCGTCGTCATCATTGTGGTCTACGTTG
ACGATCTACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCAGGCGCTG
GAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGAA
CTACCTGGGATGCCACATTATGGCGTTTCTCGAGGCGGATATTACGGAGG
AGCTCTACGTTGAGCTCCCCGACGGATATCGTGACTTGCCGAACCAGGTT
GGACGACTACAGAAGACCATGTACGGCCTGATGCACGCCGGACTGCTGTG
GCCGAAGAAGTTCGGCGGAGAGTTGATAGTGAAGGAGTTAGAAAGGTCCC
AAGCCGATCCCTGCGTGTTCCGGCGGAAACATCTAGGGAAGGTCGTCGTC
ATCATTGTGGTCTACGTTGACGATCTACTAGTGCTGAGCGAAACGAAGCA
GGACGAGCATCAGGCGCTGGAAGACCTTCGATCCAGCTTCCCCATCAAGG
ATCTAGGGGAGATCTCGAACTACCTGGGATGCCACATT
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