mRNA_F-serratus_M_contig1103.968.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1103.968.1
Unique NamemRNA_F-serratus_M_contig1103.968.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.320e-61
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
            KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEY AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITD GDSDILRQ
Sbjct:    8 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 107
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.310e-52
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQTIDV 312
            KK IES+N RLQLVM+SGKASLGYK T+K MR+++AKM++ISNNCPPLRKSEIEY A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITD GDSDILR   +V
Sbjct:    8 KKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILRTVPEV 111
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI)

HSP 1 Score: 163 bits (413), Expect = 2.620e-50
Identity = 76/99 (76.77%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +ES+N+RLQLVM+SGKASLGYK+TIK++R+T+AK+V+IS+NCPPLRKSEIEY AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct:   10 KKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA)

HSP 1 Score: 159 bits (403), Expect = 8.770e-49
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
            KKA ES+N+RL LVMKSGK +LGYKST+KS+R  +AK+++IS NCPPLRKSEIEY AMLAK  VHHYTG+N DLGTACGKYFRVS LSITDPGDSDI+RQ
Sbjct:    8 KKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A482SS92_9ARCH (50S ribosomal protein L30e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS92_9ARCH)

HSP 1 Score: 157 bits (397), Expect = 8.680e-48
Identity = 72/99 (72.73%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +ES+N ++QLVMKSGK +LGYK+T+K++RS +AKMV+ISNN P LRKSE+EY AMLAKC++HHY+G+N+DLGTACGK+FRVS++SITDPGDSDILR
Sbjct:   17 KKNVESINGKIQLVMKSGKTALGYKTTLKALRSNKAKMVVISNNTPTLRKSEVEYYAMLAKCSIHHYSGNNSDLGTACGKFFRVSMMSITDPGDSDILR 115
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.120e-47
Identity = 72/100 (72.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
            KKA+ES+N+++QLVMKSGK +LGYK+TIK++R+ +AKMVLI++N PPLRKSE+EY AMLAKC VHHY G+N++LGTACGK++RVS++SITD GDSDILRQ
Sbjct:   13 KKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A0G4J7S9_PLABS (Ribosomal_L7Ae domain-containing protein n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4J7S9_PLABS)

HSP 1 Score: 155 bits (392), Expect = 4.290e-47
Identity = 75/99 (75.76%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KKAIES+N+RLQLV+KSGK SLGYKST+KS+R  +AK+V+I+NNCP LRKSEIEY AMLAK  VHHY+G+N +LGT+CGKYFRVS L+ITDPGDSDI+R
Sbjct:   11 KKAIESINSRLQLVVKSGKYSLGYKSTLKSLRMGKAKLVIIANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTSCGKYFRVSCLTITDPGDSDIIR 109
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BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A6S7GSE1_PARCT (60S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7GSE1_PARCT)

HSP 1 Score: 154 bits (389), Expect = 1.390e-46
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK+ ES+N+RLQLVMKSGK +LGYKST+K++R  +AK+V+ISNN P LRKSEIEY AMLAK  VHHYTG+N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct:    8 KKSQESINSRLQLVMKSGKYTLGYKSTLKTLRQGKAKLVIISNNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIR 106
[Close]
BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.930e-46
Identity = 73/99 (73.74%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +E+MN++LQLVMKSGKASLGYKS+IK++R+ +AK+VL+S NCPPLR+SEIEY AMLAK  VHHY G+NTDLGTACGKYFRV VL +T+ GDS+ILR
Sbjct:   47 KKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILR 145
[Close]
BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Match: A0A061SCJ0_9CHLO (Large subunit ribosomal protein L30e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SCJ0_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 3.420e-46
Identity = 71/103 (68.93%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQTID 309
            KK+ ES+N+RLQLVMKSGK +LGYK+ +KS+RS ++K+++ISNNCPPLRKSEIEY AML+K  VHH+ G+N +LGTACG+Y+RVS+LSITDPGDSDI++ T D
Sbjct:   10 KKSQESINSRLQLVMKSGKYTLGYKTCLKSLRSGKSKLIIISNNCPPLRKSEIEYYAMLSKTGVHHFAGNNVELGTACGRYYRVSMLSITDPGDSDIIKTTSD 112
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1103.968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN84_ECTSI1.320e-6198.00Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXX2_9STRA1.310e-5278.85Ribosomal protein rpl30 n=1 Tax=Tribonema minus Ta... [more]
A0A812PA55_SYMMI2.620e-5076.77RPL30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
L8GX53_ACACA8.770e-4978.0060S ribosomal protein, putative n=1 Tax=Acanthamoe... [more]
A0A482SS92_9ARCH8.680e-4872.7350S ribosomal protein L30e n=1 Tax=archaeon TaxID=... [more]
A0A7S3HF33_9STRA3.120e-4772.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0G4J7S9_PLABS4.290e-4775.76Ribosomal_L7Ae domain-containing protein n=2 Tax=P... [more]
A0A6S7GSE1_PARCT1.390e-4676.7760S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID... [more]
A0A7S2USR9_9STRA1.930e-4673.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A061SCJ0_9CHLO3.420e-4668.93Large subunit ribosomal protein L30e n=1 Tax=Tetra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1103contigF-serratus_M_contig1103:29305..29619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D8LN84
Preferred nameRPL30
KEGG koko:K02866,ko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001889,GO:0001906,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007275,GO:0007399,GO:0007422,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031640,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035368,GO:0035821,GO:0036002,GO:0040007,GO:0042254,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045901,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048732,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061008,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1904569,GO:1904571,GO:1990904,GO:2000112
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG1911@1,KOG2988@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size315
Cds size297
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.2851303-UTR-F-serratus_M_contig1103:29304..293221622928978.2851303-UTR-F-serratus_M_contig1103:29304..29322Fucus serratus maleUTRF-serratus_M_contig1103 29305..29322 +
1690962652.9821305-UTR-F-serratus_M_contig1103:29304..293221690962652.9821305-UTR-F-serratus_M_contig1103:29304..29322Fucus serratus maleUTRF-serratus_M_contig1103 29305..29322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.3022616-CDS-F-serratus_M_contig1103:29322..296191622928978.3022616-CDS-F-serratus_M_contig1103:29322..29619Fucus serratus maleCDSF-serratus_M_contig1103 29323..29619 +
1690962652.9973223-CDS-F-serratus_M_contig1103:29322..296191690962652.9973223-CDS-F-serratus_M_contig1103:29322..29619Fucus serratus maleCDSF-serratus_M_contig1103 29323..29619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1103.968.1prot_F-serratus_M_contig1103.968.1Fucus serratus malepolypeptideF-serratus_M_contig1103 29323..29619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1103.968.1

>prot_F-serratus_M_contig1103.968.1 ID=prot_F-serratus_M_contig1103.968.1|Name=mRNA_F-serratus_M_contig1103.968.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYL
AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQTIDV*
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mRNA from alignment at F-serratus_M_contig1103:29305..29619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1103.968.1 ID=mRNA_F-serratus_M_contig1103.968.1|Name=mRNA_F-serratus_M_contig1103.968.1|organism=Fucus serratus male|type=mRNA|length=315bp|location=Sequence derived from alignment at F-serratus_M_contig1103:29305..29619+ (Fucus serratus male)
AAGAAGGCCATCGAGTCGATGAACGCCCGGCTCCAGCTGGTGATGAAGTC
CGGAAAGGCTTCGCTGGGGTACAAGTCGACCATCAAGTCGATGCGCAGCA
CCCGCGCCAAGATGGTTCTCATCTCCAACAACTGCCCTCCGCTCCGCAAG
TCCGAGATCGAGTACCTCGCTATGCTTGCCAAGTGCGCCGTGCACCATTA
CACGGGCTCCAACACCGACCTAGGAACCGCCTGCGGGAAGTACTTCCGAG
TTTCGGTGCTGTCCATCACGGACCCTGGAGACTCGGACATCCTTCGCCAG
ACTATTGACGTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1103:29305..29619+

>mRNA_F-serratus_M_contig1103.968.1 ID=mRNA_F-serratus_M_contig1103.968.1|Name=mRNA_F-serratus_M_contig1103.968.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1103:29305..29619+ (Fucus serratus male)
ATGAACGCCCGGCTCCAGCTGGTGATGAAGTCCGGAAAGGCTTCGCTGGG
GTACAAGTCGACCATCAAGTCGATGCGCAGCACCCGCGCCAAGATGGTTC
TCATCTCCAACAACTGCCCTCCGCTCCGCAAGTCCGAGATCGAGTACCTC
GCTATGCTTGCCAAGTGCGCCGTGCACCATTACACGGGCTCCAACACCGA
CCTAGGAACCGCCTGCGGGAAGTACTTCCGAGTTTCGGTGCTGTCCATCA
CGGACCCTGGAGACTCGGACATCCTTCGCCAGACTATTGACGTGTAGATG
AACGCCCGGCTCCAGCTGGTGATGAAGTCCGGAAAGGCTTCGCTGGGGTA
CAAGTCGACCATCAAGTCGATGCGCAGCACCCGCGCCAAGATGGTTCTCA
TCTCCAACAACTGCCCTCCGCTCCGCAAGTCCGAGATCGAGTACCTCGCT
ATGCTTGCCAAGTGCGCCGTGCACCATTACACGGGCTCCAACACCGACCT
AGGAACCGCCTGCGGGAAGTACTTCCGAGTTTCGGTGCTGTCCATCACGG
ACCCTGGAGACTCGGACATCCTTCGCCAGACTATTGACGTGTAG
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