mRNA_F-serratus_M_contig1080.771.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL) HSP 1 Score: 162 bits (409), Expect = 1.240e-44 Identity = 79/208 (37.98%), Postives = 125/208 (60.10%), Query Frame = 1 Query: 19 SYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 SY+ D PTT+ E + +WP W+ A++ EMD ++ W +V P+G+ + K IFK K +D +YK R VA+GF Q +G Y ++ SP ++R LA+ Q W Q+DV+ AFL ++TEE+Y+ P+G+ V RL++++YGL A W+++F ++ GF RS+ D C++RR G VI+V+YVDD+L+ Sbjct: 89 SYVEDLPTTVSECRQREDWPLWKQAMQEEMDSLVSNEKWTLVKLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYMLQPEGFEQRDGLVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLYRRGS-GDTQVILVIYVDDVLI 295
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR) HSP 1 Score: 159 bits (402), Expect = 4.000e-44 Identity = 82/207 (39.61%), Postives = 131/207 (63.29%), Query Frame = 1 Query: 31 DEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRD--SPNQVGRLQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLVL 645 DEPTT EA + + +W A++ EM+ VW +VD P+G ++G K +FK+K DG V +K R VAKGFRQ+ G+ Y E+ SP SIR+ LA+ A D+E Q+DV+ AFL ++ E++Y+ P+G+ D S +V +LQ+++YGL A W+ +F + GF +++ +PCV++ K G +V+ +V+YVDD+L++ Sbjct: 70 DEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPHSAEKVCKLQRSIYGLKQASRSWNFRFDDAIKEFGFNKNEDEPCVYK-KVSGSIVIFLVLYVDDILLI 275
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT) HSP 1 Score: 156 bits (394), Expect = 1.270e-42 Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 1 Query: 31 DEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLVL 645 +EP T EA SSE PQW+ A+K E++ + W++VD P G LG + IFKRK+ DG ++KYK R V KG+RQ +G+ Y ++ SP +SIRM LA+ A + + Q+DV+ AFL ++ EE+Y+E P+G+ S N+V +L K++YGL A W +KF ++ GF+ ++ D CV+ K+ VI+ +YVDD+L++ Sbjct: 28 NEPKTYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQWHQKFDQAMMESGFKINECDKCVYV-KNTTHGYVILCLYVDDMLII 233
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR) HSP 1 Score: 155 bits (393), Expect = 1.530e-42 Identity = 87/216 (40.28%), Postives = 132/216 (61.11%), Query Frame = 1 Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 P L + EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+ +E P+G+ +P Q G+ L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+++ Sbjct: 60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEILMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYV-KNTMRGYVILCLYVDDMVI 273
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR) HSP 1 Score: 161 bits (407), Expect = 1.570e-42 Identity = 90/216 (41.67%), Postives = 133/216 (61.57%), Query Frame = 1 Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 P L + EP T EA SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+L+ Sbjct: 125 PDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYV-KNTTRGYVILCLYVDDMLI 338
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: UPI00136360C9 (hypothetical protein n=1 Tax=Ligilactobacillus murinus TaxID=1622 RepID=UPI00136360C9) HSP 1 Score: 152 bits (385), Expect = 2.650e-42 Identity = 81/207 (39.13%), Postives = 126/207 (60.87%), Query Frame = 1 Query: 31 DEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGY--RDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLVL 645 DEPTT +A + +W A+K EM+ VW +VD P+G +G K +FK+K DG V +K R VAKGF+QI GI Y E+ SP SIR+ A+ A D+E Q+DV+ AFL + E++Y+ P+G+ ++ N+V +LQ+++YGL A W+ F + GF +++ +PCV++ K G +V +V+YVDD+L++ Sbjct: 4 DEPTTYQQAMSGPDSEKWLMAMKSEMESMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVITFKGRLVAKGFKQIHGIDYDETFSPVAMLKSIRILFAIAAHYDYEIWQMDVKTAFLNGKLLEDVYMTQPEGFVTPENANKVCKLQRSIYGLKQASRSWNLHFDDAIKEFGFIKNEDEPCVYK-KVSGSAIVFLVLYVDDILLI 209
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 161 bits (407), Expect = 3.380e-42 Identity = 90/216 (41.67%), Postives = 136/216 (62.96%), Query Frame = 1 Query: 7 TGLASYLPD-EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 T +Y+ + EP T EA SSE PQW+ A+K E+D + +W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+L+ Sbjct: 281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINKCDKCVYV-KNTMRGYVILCLYVDDMLI 494
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR) HSP 1 Score: 159 bits (401), Expect = 3.590e-42 Identity = 88/215 (40.93%), Postives = 133/215 (61.86%), Query Frame = 1 Query: 7 TGLASYLPD-EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYR--DSPNQVGRLQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 T +Y+ + EP T EA SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +V +L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+L+ Sbjct: 125 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSALGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYV-KNTTRGYVILCLYVDDMLI 338
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6LGV6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LGV6_9ASTR) HSP 1 Score: 159 bits (402), Expect = 4.130e-42 Identity = 89/216 (41.20%), Postives = 133/216 (61.57%), Query Frame = 1 Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 P L + EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+L+ Sbjct: 60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNRTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYV-KNTMRGYVILRLYVDDMLI 273
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Match: A0A5N6NLM6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLM6_9ASTR) HSP 1 Score: 161 bits (407), Expect = 5.380e-42 Identity = 89/216 (41.20%), Postives = 133/216 (61.57%), Query Frame = 1 Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELITKGFERSQTDPCVFRRKHLGKVVVIIVVYVDDLLV 642 P L + EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ GF+ ++ D CV+ K+ + VI+ +YVDD+L+ Sbjct: 759 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWEIVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYV-KNTTRGYVILCLYVDDMLI 972 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1080.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1080.771.1 >prot_F-serratus_M_contig1080.771.1 ID=prot_F-serratus_M_contig1080.771.1|Name=mRNA_F-serratus_M_contig1080.771.1|organism=Fucus serratus male|type=polypeptide|length=215bp MPTGLASYLPDEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRback to top mRNA from alignment at F-serratus_M_contig1080:63395..64039+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1080.771.1 ID=mRNA_F-serratus_M_contig1080.771.1|Name=mRNA_F-serratus_M_contig1080.771.1|organism=Fucus serratus male|type=mRNA|length=645bp|location=Sequence derived from alignment at F-serratus_M_contig1080:63395..64039+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1080:63395..64039+ >mRNA_F-serratus_M_contig1080.771.1 ID=mRNA_F-serratus_M_contig1080.771.1|Name=mRNA_F-serratus_M_contig1080.771.1|organism=Fucus serratus male|type=CDS|length=1290bp|location=Sequence derived from alignment at F-serratus_M_contig1080:63395..64039+ (Fucus serratus male)back to top |