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Homology
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.240e-12 Identity = 53/125 (42.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query: 93 EGMNLLLLPQETPGSSIAPMEIPLQSALALPAVTLPVG---TPERRTVIGGPDAGEGPTRNQFPLKTTTGFVRTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPKPQGAR 458
+G+NLLLL QE ++ P P+ PV TP R+ G + G G P P LR SCDRCTMRKI+CDG C+RC+ D Q CHYSLK+KSGPKP R
Sbjct: 364 QGLNLLLLSQELQEAAGTPR----------PSAGAPVSSTKTPAERS--GSSENGRGRDAGSKPAG--------PKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIR 468
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 2.020e-9 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query: 324 SCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPKPQGARNLAISPVSDGKE 494
SCDRCTMRKI+CDG C+RC+ D Q CHYSLK+KSGPKP R + SP S +E
Sbjct: 474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKS-SPRSPREE 529
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: K8YU74_NANGC (Tpa: zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC) HSP 1 Score: 60.1 bits (144), Expect = 1.240e-5 Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 3
Query: 300 RTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPK 443
R+ KLRRSCDRCT +KIRCDG C+ C G ACHYS + ++GPK
Sbjct: 7 RSRKKLRRSCDRCTSKKIRCDGLAA-CQNCVRRGYACHYSERRRTGPK 53
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2098 |
Cds size | 867 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928925.4629865-UTR-F-serratus_M_contig1075:213595..214728 | 1622928925.4629865-UTR-F-serratus_M_contig1075:213595..214728 | Fucus serratus male | UTR | F-serratus_M_contig1075 213596..214728 - |
1690962632.1331925-UTR-F-serratus_M_contig1075:213595..214728 | 1690962632.1331925-UTR-F-serratus_M_contig1075:213595..214728 | Fucus serratus male | UTR | F-serratus_M_contig1075 213596..214728 - |
1622928925.5248425-UTR-F-serratus_M_contig1075:217917..218015 | 1622928925.5248425-UTR-F-serratus_M_contig1075:217917..218015 | Fucus serratus male | UTR | F-serratus_M_contig1075 217918..218015 - |
1690962632.1822894-UTR-F-serratus_M_contig1075:217917..218015 | 1690962632.1822894-UTR-F-serratus_M_contig1075:217917..218015 | Fucus serratus male | UTR | F-serratus_M_contig1075 217918..218015 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928925.4802537-CDS-F-serratus_M_contig1075:214728..215166 | 1622928925.4802537-CDS-F-serratus_M_contig1075:214728..215166 | Fucus serratus male | CDS | F-serratus_M_contig1075 214729..215166 - |
1690962632.1430109-CDS-F-serratus_M_contig1075:214728..215166 | 1690962632.1430109-CDS-F-serratus_M_contig1075:214728..215166 | Fucus serratus male | CDS | F-serratus_M_contig1075 214729..215166 - |
1622928925.4906685-CDS-F-serratus_M_contig1075:215464..215606 | 1622928925.4906685-CDS-F-serratus_M_contig1075:215464..215606 | Fucus serratus male | CDS | F-serratus_M_contig1075 215465..215606 - |
1690962632.1524808-CDS-F-serratus_M_contig1075:215464..215606 | 1690962632.1524808-CDS-F-serratus_M_contig1075:215464..215606 | Fucus serratus male | CDS | F-serratus_M_contig1075 215465..215606 - |
1622928925.5135968-CDS-F-serratus_M_contig1075:217630..217917 | 1622928925.5135968-CDS-F-serratus_M_contig1075:217630..217917 | Fucus serratus male | CDS | F-serratus_M_contig1075 217631..217917 - |
1690962632.1658695-CDS-F-serratus_M_contig1075:217630..217917 | 1690962632.1658695-CDS-F-serratus_M_contig1075:217630..217917 | Fucus serratus male | CDS | F-serratus_M_contig1075 217631..217917 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1075.739.1 >prot_F-serratus_M_contig1075.739.1 ID=prot_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=polypeptide|length=289bp
MNLLLLPQETPGSSIAPMEIPLQSALALPAVTLPVGTPERRTVIGGPDAG EGPTRNQFPLKTTTGFVRTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESD GQACHYSLKAKSGPKPQGARNLAISPVSDGKEGAAGAAGFPRPDQNGTPA DSAEASSSAGREIKSTDAGTPWLPAGVTPVATFSPVEAHSQAPAPMETDP VHDLTFSMVGRTMEELEREQDQAAEVAAVAEQTIAAAASTGTTAGNSVEV EKKDGARMSETGAAFRLAGSAEGSDGRGHDGQVVAPCL* back to topmRNA from alignment at F-serratus_M_contig1075:213596..218015- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1075.739.1 ID=mRNA_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=mRNA|length=4420bp|location=Sequence derived from alignment at F-serratus_M_contig1075:213596..218015- (Fucus serratus male) CGGCGGTGGCAGCGGCTGCTGCAGCCGCCGCGGCTGCTGCTGCGGGGACT
CCCCTCGGCCCCGCAGGAATTCCTCCACCGAAACCTTCCCCCGAAGGAAT
GAACCTTCTGCTTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCCGA
TGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGCCG
GTGGGTACGCCAGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGGGA
GGGGCCAACCCGGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGTGA
GGACTCCTTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGAAG
ATTCGGTGCGACGGGAGCGGGGTCATGTGCAAGAGGTGGGAAATTGGAAG
ATATGGTTGCACATAGGTCCGATTAGCGTATAATTGTATCAGCGGTTCAA
TGGTTCGGTAATACAAGGCGAGAGCCATACCTTCGCCTTGTTATGACGAA
ATGTTGCCGTATACTTAGTATGAAATTTTATCTTCGAGTTGGATGTTTTT
GGAGCTGTTCCTGTTCGCAAAAAAAATGAAACTCGTGACTAAAGGCGGGA
TTCATTGTATTACCAGGTCTTCCCGCGGCACTTTTATTTTATGCGCGGAC
AACCAATGGTCGAACTGACGGACGATGATAACAGTGCTGCTGATATCATG
GTACATAGTATGTACATATATGTACTGCTGCATTCATAGTACATACGGTA
ATTTATACCGGTACCGCTGTGGTCACATATATAATATGCATATAGCATTG
AACCGTGCACGAATGTACATATACGCAAATTAAAAATATATGTAAACAAA
TGCAAACAGCAGTACATGCAGTATTTACTTACCACAGATGCAATTGCAAG
GACACTCCATTTCCTTGTTCAGGTGACCACGAGCAGGTTTGGCAACCTTC
GCGGTTGTTCCATACTCTGCTATAAGTAAGTGGTGACTGTATATACTATA
CATACATATCATCAGCAGTCGTGCCTGTCTGTTGTACCAAAAAACAAAGC
TGAATATCAGTTGTCTGTGAAGCATACCATATCCATTGTTTTTCTTGTAT
GGATGTATTTAGCCCCACCATACTAGTTATTATGTCGATTTTGTGACAAT
TTGTACAGAGTGTCGAGTGTTATTTCTCCCGGCGGATTTCGGAACCAAAG
AGCGCAGAATTTTGATGGCGCACGAGCTTAGGCCATCTACAAAAGTGTAA
AACGCTCAGGTATCTTTGTGTGATGGCCGTAATTGGTTCGCGAGTGTGCA
CACAAAGCAAGGTGTCTTCCAGTCGAGGCGTCCCAAGAGGGTTGCTGTTG
CGCCGCACAGGCTTTCAACACAACAAAAGATACGACTTTTCCATCGTAGC
TCGGTTTCGTGTGCTAATTCCAGCGGACATGTTTATTTAAATCCCCCATA
CGATGCTGTTTGCAGTTTTGTCAGCTCGAGGGCTTTGTGCGGCATGAATG
GAATGCATTTGATCGGCTGAGACAAGCTTTGGTTCACATCCACACCACAT
ACTCTCTTGACCGCCGTCCTCGACCGTCCTCGACGCACACTCAACCGTTT
CGGCCGGTGCGCGTAATGGAAGCGTCCATGTAGGCTGGGATACACGATGT
ACAAGAATTTGGTCGTCTAAGTTGAGCACTCAGCTCAGGATGATGCAAAC
CTGAAACAAAGCGTCTCTACCGGTGCCTGCAACTGTAGCGGACCCCCGAC
AATCGCATGATTCGGCGCAAATACGAGTGGCGACGATTGCATTTCAGACA
GAGCACGAATAGACGCGAAATCTTCAGGAAGCCCATCTCTCTCAACGGCG
AACACTTTTATATCTTGTCGATTAGCTATCTTTTCTTGTGAGCTGACCTC
CATTTCTGCCATCCCTGTCATAAGTGCTACAGCCCTTGATAAAAGCTGTA
AATGGCCCAAATGGAGGCATTTCATTGAAGCAGACATTCAACCGCATTTT
ATTTATTTTTGTAACCGACAATATTTTGGAGTACAAAAAGCAAAAAAACG
GGGATTGGGGAACAATCGTACATAGTGCAACCTTAAGAGAGAGATAATTA
AAATAACAATGATGGGAAAACAGCGCAAAGCGGAGCGCTTACATTGTTTC
ACAAGCCCTTTGGCCGAGGCCTGTAAGAGAGCTGTCGCCACATATCCCTT
TGATTAAAGACGCTGAATGTTCTCCGCCATATCATCTTCTGGGCTCCCTG
TTTGTTGATGTATGTTGGTGATCGCCTGTCTGTTTGTGACCGCCTAACTG
TTAGTGACCGCCTGTCTTTTGGCGACCGCCTGTCCGTGGATGGCCACCTA
ACTCTTATTAATAGTGACCGCCTGTCGGTTTATGACGGCCTGTCTGTTGA
TGACCACAGGTGCGAAAGTGATGGACAGGCGTGTCACTACAGCCTCAAGG
CAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAACCTGGCGATTTCACCG
GTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGCAGGATTCCCGCGGCC
GGTGAGCGACAGGCACAACGCCTTCCAAGTATGTATTACGTGTCGGGGGG
AGGGGAGGGGAAATGAAGAAATGAGGCACTTTTTGCCGCCGTTCATCTCT
TGTTTTCGTGGTTTCGAGTATACTCTTGTAGTACGTTGGTATACCCTCTG
TGGCAAGAAAACAAAATAAAAAAAGCTACTGGTATGTACTTCTATCAATA
TAATACTATGTAGTATAGTGTCCTATCAGTTTTCGGGGGACATTGCCGTA
CATGGCATTCGAGTGGGGTCATGGCCTCTTTTCTGTCTTTGCACAACAGG
ATCAGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCGTCTGCCGGC
CGAGAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCCTGCTGGCGT
GACTCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCACAAGCGCCCG
CCCCTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGTATGGTGGGG
AGGACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGCTGAGGTCGC
TGCCGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGGGGACTACAG
CAGGCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGTATGAGTGAA
ACTGGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATCGGACGGGCG
TGGACACGATGGACAGGTGGTCGCTCCTTGTCTCTAGCCCTCACCACAGA
CGAGTGACGTCGAGGCACCAAGCGAGGGTTCCGTGGCGGTCGAGTAGGCT
TCATATGATCGGGCTGTTTTCGCTCCTCGAGTACCACTCTTACGACCCTA
TACAGAAAACGTGACATGATGTACGAGCAGCAATCGCTTCGCCTACGCGT
CCTATGATTTAGGCCGATGCGGTAGGCTGATGCTGCAAGCCGATGCCGTA
GGCTCATGCTGTATTAATAGGTCGGTGGTAACAGGTAACGGATGGCGATA
AGAGATAAGTTTCACTCTTAATACAGTAGTCCGAGAGTTCACGATTGATA
TAACTAGGGGCGAGGGTAAATACGAGTACGATATAAGAGTAGCTGTAATC
CTTTGTATGTGCACGAATAACACGACCAAACTCTCGTGCTCGATGCTTGC
TTAAGTCTTGAGCTGTTGGGTGACTGCGTAGGTACTAGACTGAGTGACAT
TAATTTCACACTTATCACCGTATACTATACTTTTATACTAGTGTTAGATG
CTTTCTCTACAGAATCTGACGGCCGAGCTCCCGGTCTTGGGTCTTGGTGG
AGCTTTTACCCTTGTCGTTCCTTTGGGTTTGGACACCCGCTTACGGGGAG
CTCTTACATAAGCAAAACTCGTTTTTTCTGGAGTAGACAGGCAATGCAAT
ATTCTTGTGAGTTCCAGGGTTTTCATGATGCTTTGTTATATCTTTGAGCG
GCGCGTGCTTTCCATGGCGCACATTTCGTAGGGCCCTAGTCTCGAGGCTG
GCTCTCACCACAGGTAGTGTACTACTCTAGGTTAGAGCTAATTAGGCCCG
TTCAACGCACCAAGTACTTCCTGCCTGTATGTCGTATAATAGTAAAAGCT
TGACTTGGCCCTCACGCTGAAGTGCGCGTTCCATTTCCTTTCCTGCGTTA
TTATTGGGAATGTGAGGCTCTAACCTGTTGAGAATTTGTGGCGTTGGTTC
CGTAGGAAGATGCTTGGAACTAAGCGGTTGGGATAGTGGGAGTGAACCAC
ACTATGGTATCAAAACCAGTTCAGTGGTGTTTGAAGTGGTTGCGGTAGTG
ATCAGGCAATGTGCCTTGAACTGTTTGTGGCAGATGGTTTTGAGTTGCGA
ATGGGGAGAAAAGGAGAGTG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1075:213596..218015- >mRNA_F-serratus_M_contig1075.739.1 ID=mRNA_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig1075:213596..218015- (Fucus serratus male) ATGAACCTTCTGCTTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCC GATGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGC CGGTGGGTACGCCAGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGG GAGGGGCCAACCCGGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGT GAGGACTCCTTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGA AGATTCGGTGCGACGGGAGCGGGGTCATGTGCAAGAGATGAACCTTCTGC TTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCCGATGGAGATACCG CTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGCCGGTGGGTACGCC AGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGGGAGGGGCCAACCC GGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGTGAGGACTCCTTCG AAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGAAGATTCGGTGCGA CGGGAGCGGGGTCATGTGCAAGAGGTGCGAAAGTGATGGACAGGCGTGTC ACTACAGCCTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAAC CTGGCGATTTCACCGGTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGC AGGATTCCCGCGGCCGGTGCGAAAGTGATGGACAGGCGTGTCACTACAGC CTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAACCTGGCGAT TTCACCGGTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGCAGGATTCC CGCGGCCGGATCAGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCG TCTGCCGGCCGAGAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCC TGCTGGCGTGACTCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCAC AAGCGCCCGCCCCTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGT ATGGTGGGGAGGACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGC TGAGGTCGCTGCCGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGG GGACTACAGCAGGCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGT ATGAGTGAAACTGGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATC GGACGGGCGTGGACACGATGGACAGGTGGTCGCTCCTTGTCTCTAGGATC AGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCGTCTGCCGGCCGA GAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCCTGCTGGCGTGAC TCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCACAAGCGCCCGCCC CTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGTATGGTGGGGAGG ACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGCTGAGGTCGCTGC CGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGGGGACTACAGCAG GCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGTATGAGTGAAACT GGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATCGGACGGGCGTGG ACACGATGGACAGGTGGTCGCTCCTTGTCTCTAG back to top
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