mRNA_F-serratus_M_contig1075.739.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.739.1
Unique NamemRNA_F-serratus_M_contig1075.739.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.240e-12
Identity = 53/125 (42.40%), Postives = 64/125 (51.20%), Query Frame = 3 
Query:   93 EGMNLLLLPQETPGSSIAPMEIPLQSALALPAVTLPVG---TPERRTVIGGPDAGEGPTRNQFPLKTTTGFVRTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPKPQGAR 458
            +G+NLLLL QE   ++  P           P+   PV    TP  R+  G  + G G      P          P  LR SCDRCTMRKI+CDG    C+RC+ D Q CHYSLK+KSGPKP   R
Sbjct:  364 QGLNLLLLSQELQEAAGTPR----------PSAGAPVSSTKTPAERS--GSSENGRGRDAGSKPAG--------PKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIR 468
[Close]
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.020e-9
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:  324 SCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPKPQGARNLAISPVSDGKE 494
            SCDRCTMRKI+CDG    C+RC+ D Q CHYSLK+KSGPKP   R  + SP S  +E
Sbjct:  474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKS-SPRSPREE 529
[Close]
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Match: K8YU74_NANGC (Tpa: zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-5
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  300 RTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESDGQACHYSLKAKSGPK 443
            R+  KLRRSCDRCT +KIRCDG    C+ C   G ACHYS + ++GPK
Sbjct:    7 RSRKKLRRSCDRCTSKKIRCDGLAA-CQNCVRRGYACHYSERRRTGPK 53
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.240e-1242.40C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L603_9PHAE2.020e-961.40Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
K8YU74_NANGC1.240e-558.33Tpa: zn 2cys6 transcription factor n=3 Tax=Monodop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:213596..218015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2098
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.739.1prot_F-serratus_M_contig1075.739.1Fucus serratus malepolypeptideF-serratus_M_contig1075 214729..217917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.4629865-UTR-F-serratus_M_contig1075:213595..2147281622928925.4629865-UTR-F-serratus_M_contig1075:213595..214728Fucus serratus maleUTRF-serratus_M_contig1075 213596..214728 -
1690962632.1331925-UTR-F-serratus_M_contig1075:213595..2147281690962632.1331925-UTR-F-serratus_M_contig1075:213595..214728Fucus serratus maleUTRF-serratus_M_contig1075 213596..214728 -
1622928925.5248425-UTR-F-serratus_M_contig1075:217917..2180151622928925.5248425-UTR-F-serratus_M_contig1075:217917..218015Fucus serratus maleUTRF-serratus_M_contig1075 217918..218015 -
1690962632.1822894-UTR-F-serratus_M_contig1075:217917..2180151690962632.1822894-UTR-F-serratus_M_contig1075:217917..218015Fucus serratus maleUTRF-serratus_M_contig1075 217918..218015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.4802537-CDS-F-serratus_M_contig1075:214728..2151661622928925.4802537-CDS-F-serratus_M_contig1075:214728..215166Fucus serratus maleCDSF-serratus_M_contig1075 214729..215166 -
1690962632.1430109-CDS-F-serratus_M_contig1075:214728..2151661690962632.1430109-CDS-F-serratus_M_contig1075:214728..215166Fucus serratus maleCDSF-serratus_M_contig1075 214729..215166 -
1622928925.4906685-CDS-F-serratus_M_contig1075:215464..2156061622928925.4906685-CDS-F-serratus_M_contig1075:215464..215606Fucus serratus maleCDSF-serratus_M_contig1075 215465..215606 -
1690962632.1524808-CDS-F-serratus_M_contig1075:215464..2156061690962632.1524808-CDS-F-serratus_M_contig1075:215464..215606Fucus serratus maleCDSF-serratus_M_contig1075 215465..215606 -
1622928925.5135968-CDS-F-serratus_M_contig1075:217630..2179171622928925.5135968-CDS-F-serratus_M_contig1075:217630..217917Fucus serratus maleCDSF-serratus_M_contig1075 217631..217917 -
1690962632.1658695-CDS-F-serratus_M_contig1075:217630..2179171690962632.1658695-CDS-F-serratus_M_contig1075:217630..217917Fucus serratus maleCDSF-serratus_M_contig1075 217631..217917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.739.1

>prot_F-serratus_M_contig1075.739.1 ID=prot_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=polypeptide|length=289bp
MNLLLLPQETPGSSIAPMEIPLQSALALPAVTLPVGTPERRTVIGGPDAG
EGPTRNQFPLKTTTGFVRTPSKLRRSCDRCTMRKIRCDGSGVMCKRCESD
GQACHYSLKAKSGPKPQGARNLAISPVSDGKEGAAGAAGFPRPDQNGTPA
DSAEASSSAGREIKSTDAGTPWLPAGVTPVATFSPVEAHSQAPAPMETDP
VHDLTFSMVGRTMEELEREQDQAAEVAAVAEQTIAAAASTGTTAGNSVEV
EKKDGARMSETGAAFRLAGSAEGSDGRGHDGQVVAPCL*
back to top

mRNA from alignment at F-serratus_M_contig1075:213596..218015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.739.1 ID=mRNA_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=mRNA|length=4420bp|location=Sequence derived from alignment at F-serratus_M_contig1075:213596..218015- (Fucus serratus male)
CGGCGGTGGCAGCGGCTGCTGCAGCCGCCGCGGCTGCTGCTGCGGGGACT
CCCCTCGGCCCCGCAGGAATTCCTCCACCGAAACCTTCCCCCGAAGGAAT
GAACCTTCTGCTTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCCGA
TGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGCCG
GTGGGTACGCCAGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGGGA
GGGGCCAACCCGGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGTGA
GGACTCCTTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGAAG
ATTCGGTGCGACGGGAGCGGGGTCATGTGCAAGAGGTGGGAAATTGGAAG
ATATGGTTGCACATAGGTCCGATTAGCGTATAATTGTATCAGCGGTTCAA
TGGTTCGGTAATACAAGGCGAGAGCCATACCTTCGCCTTGTTATGACGAA
ATGTTGCCGTATACTTAGTATGAAATTTTATCTTCGAGTTGGATGTTTTT
GGAGCTGTTCCTGTTCGCAAAAAAAATGAAACTCGTGACTAAAGGCGGGA
TTCATTGTATTACCAGGTCTTCCCGCGGCACTTTTATTTTATGCGCGGAC
AACCAATGGTCGAACTGACGGACGATGATAACAGTGCTGCTGATATCATG
GTACATAGTATGTACATATATGTACTGCTGCATTCATAGTACATACGGTA
ATTTATACCGGTACCGCTGTGGTCACATATATAATATGCATATAGCATTG
AACCGTGCACGAATGTACATATACGCAAATTAAAAATATATGTAAACAAA
TGCAAACAGCAGTACATGCAGTATTTACTTACCACAGATGCAATTGCAAG
GACACTCCATTTCCTTGTTCAGGTGACCACGAGCAGGTTTGGCAACCTTC
GCGGTTGTTCCATACTCTGCTATAAGTAAGTGGTGACTGTATATACTATA
CATACATATCATCAGCAGTCGTGCCTGTCTGTTGTACCAAAAAACAAAGC
TGAATATCAGTTGTCTGTGAAGCATACCATATCCATTGTTTTTCTTGTAT
GGATGTATTTAGCCCCACCATACTAGTTATTATGTCGATTTTGTGACAAT
TTGTACAGAGTGTCGAGTGTTATTTCTCCCGGCGGATTTCGGAACCAAAG
AGCGCAGAATTTTGATGGCGCACGAGCTTAGGCCATCTACAAAAGTGTAA
AACGCTCAGGTATCTTTGTGTGATGGCCGTAATTGGTTCGCGAGTGTGCA
CACAAAGCAAGGTGTCTTCCAGTCGAGGCGTCCCAAGAGGGTTGCTGTTG
CGCCGCACAGGCTTTCAACACAACAAAAGATACGACTTTTCCATCGTAGC
TCGGTTTCGTGTGCTAATTCCAGCGGACATGTTTATTTAAATCCCCCATA
CGATGCTGTTTGCAGTTTTGTCAGCTCGAGGGCTTTGTGCGGCATGAATG
GAATGCATTTGATCGGCTGAGACAAGCTTTGGTTCACATCCACACCACAT
ACTCTCTTGACCGCCGTCCTCGACCGTCCTCGACGCACACTCAACCGTTT
CGGCCGGTGCGCGTAATGGAAGCGTCCATGTAGGCTGGGATACACGATGT
ACAAGAATTTGGTCGTCTAAGTTGAGCACTCAGCTCAGGATGATGCAAAC
CTGAAACAAAGCGTCTCTACCGGTGCCTGCAACTGTAGCGGACCCCCGAC
AATCGCATGATTCGGCGCAAATACGAGTGGCGACGATTGCATTTCAGACA
GAGCACGAATAGACGCGAAATCTTCAGGAAGCCCATCTCTCTCAACGGCG
AACACTTTTATATCTTGTCGATTAGCTATCTTTTCTTGTGAGCTGACCTC
CATTTCTGCCATCCCTGTCATAAGTGCTACAGCCCTTGATAAAAGCTGTA
AATGGCCCAAATGGAGGCATTTCATTGAAGCAGACATTCAACCGCATTTT
ATTTATTTTTGTAACCGACAATATTTTGGAGTACAAAAAGCAAAAAAACG
GGGATTGGGGAACAATCGTACATAGTGCAACCTTAAGAGAGAGATAATTA
AAATAACAATGATGGGAAAACAGCGCAAAGCGGAGCGCTTACATTGTTTC
ACAAGCCCTTTGGCCGAGGCCTGTAAGAGAGCTGTCGCCACATATCCCTT
TGATTAAAGACGCTGAATGTTCTCCGCCATATCATCTTCTGGGCTCCCTG
TTTGTTGATGTATGTTGGTGATCGCCTGTCTGTTTGTGACCGCCTAACTG
TTAGTGACCGCCTGTCTTTTGGCGACCGCCTGTCCGTGGATGGCCACCTA
ACTCTTATTAATAGTGACCGCCTGTCGGTTTATGACGGCCTGTCTGTTGA
TGACCACAGGTGCGAAAGTGATGGACAGGCGTGTCACTACAGCCTCAAGG
CAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAACCTGGCGATTTCACCG
GTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGCAGGATTCCCGCGGCC
GGTGAGCGACAGGCACAACGCCTTCCAAGTATGTATTACGTGTCGGGGGG
AGGGGAGGGGAAATGAAGAAATGAGGCACTTTTTGCCGCCGTTCATCTCT
TGTTTTCGTGGTTTCGAGTATACTCTTGTAGTACGTTGGTATACCCTCTG
TGGCAAGAAAACAAAATAAAAAAAGCTACTGGTATGTACTTCTATCAATA
TAATACTATGTAGTATAGTGTCCTATCAGTTTTCGGGGGACATTGCCGTA
CATGGCATTCGAGTGGGGTCATGGCCTCTTTTCTGTCTTTGCACAACAGG
ATCAGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCGTCTGCCGGC
CGAGAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCCTGCTGGCGT
GACTCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCACAAGCGCCCG
CCCCTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGTATGGTGGGG
AGGACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGCTGAGGTCGC
TGCCGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGGGGACTACAG
CAGGCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGTATGAGTGAA
ACTGGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATCGGACGGGCG
TGGACACGATGGACAGGTGGTCGCTCCTTGTCTCTAGCCCTCACCACAGA
CGAGTGACGTCGAGGCACCAAGCGAGGGTTCCGTGGCGGTCGAGTAGGCT
TCATATGATCGGGCTGTTTTCGCTCCTCGAGTACCACTCTTACGACCCTA
TACAGAAAACGTGACATGATGTACGAGCAGCAATCGCTTCGCCTACGCGT
CCTATGATTTAGGCCGATGCGGTAGGCTGATGCTGCAAGCCGATGCCGTA
GGCTCATGCTGTATTAATAGGTCGGTGGTAACAGGTAACGGATGGCGATA
AGAGATAAGTTTCACTCTTAATACAGTAGTCCGAGAGTTCACGATTGATA
TAACTAGGGGCGAGGGTAAATACGAGTACGATATAAGAGTAGCTGTAATC
CTTTGTATGTGCACGAATAACACGACCAAACTCTCGTGCTCGATGCTTGC
TTAAGTCTTGAGCTGTTGGGTGACTGCGTAGGTACTAGACTGAGTGACAT
TAATTTCACACTTATCACCGTATACTATACTTTTATACTAGTGTTAGATG
CTTTCTCTACAGAATCTGACGGCCGAGCTCCCGGTCTTGGGTCTTGGTGG
AGCTTTTACCCTTGTCGTTCCTTTGGGTTTGGACACCCGCTTACGGGGAG
CTCTTACATAAGCAAAACTCGTTTTTTCTGGAGTAGACAGGCAATGCAAT
ATTCTTGTGAGTTCCAGGGTTTTCATGATGCTTTGTTATATCTTTGAGCG
GCGCGTGCTTTCCATGGCGCACATTTCGTAGGGCCCTAGTCTCGAGGCTG
GCTCTCACCACAGGTAGTGTACTACTCTAGGTTAGAGCTAATTAGGCCCG
TTCAACGCACCAAGTACTTCCTGCCTGTATGTCGTATAATAGTAAAAGCT
TGACTTGGCCCTCACGCTGAAGTGCGCGTTCCATTTCCTTTCCTGCGTTA
TTATTGGGAATGTGAGGCTCTAACCTGTTGAGAATTTGTGGCGTTGGTTC
CGTAGGAAGATGCTTGGAACTAAGCGGTTGGGATAGTGGGAGTGAACCAC
ACTATGGTATCAAAACCAGTTCAGTGGTGTTTGAAGTGGTTGCGGTAGTG
ATCAGGCAATGTGCCTTGAACTGTTTGTGGCAGATGGTTTTGAGTTGCGA
ATGGGGAGAAAAGGAGAGTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1075:213596..218015-

>mRNA_F-serratus_M_contig1075.739.1 ID=mRNA_F-serratus_M_contig1075.739.1|Name=mRNA_F-serratus_M_contig1075.739.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig1075:213596..218015- (Fucus serratus male)
ATGAACCTTCTGCTTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCC
GATGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGC
CGGTGGGTACGCCAGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGG
GAGGGGCCAACCCGGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGT
GAGGACTCCTTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGA
AGATTCGGTGCGACGGGAGCGGGGTCATGTGCAAGAGATGAACCTTCTGC
TTCTCCCGCAGGAGACGCCAGGCTCATCGATTGCTCCGATGGAGATACCG
CTGCAAAGCGCTTTGGCCTTGCCTGCCGTGACCTTGCCGGTGGGTACGCC
AGAACGTAGAACCGTCATTGGGGGCCCTGATGCAGGGGAGGGGCCAACCC
GGAACCAGTTCCCTTTAAAAACGACTACCGGGTTTGTGAGGACTCCTTCG
AAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGGAAGATTCGGTGCGA
CGGGAGCGGGGTCATGTGCAAGAGGTGCGAAAGTGATGGACAGGCGTGTC
ACTACAGCCTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAAC
CTGGCGATTTCACCGGTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGC
AGGATTCCCGCGGCCGGTGCGAAAGTGATGGACAGGCGTGTCACTACAGC
CTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAACCTGGCGAT
TTCACCGGTGTCCGACGGCAAGGAGGGTGCTGCTGGAGCGGCAGGATTCC
CGCGGCCGGATCAGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCG
TCTGCCGGCCGAGAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCC
TGCTGGCGTGACTCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCAC
AAGCGCCCGCCCCTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGT
ATGGTGGGGAGGACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGC
TGAGGTCGCTGCCGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGG
GGACTACAGCAGGCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGT
ATGAGTGAAACTGGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATC
GGACGGGCGTGGACACGATGGACAGGTGGTCGCTCCTTGTCTCTAGGATC
AGAATGGGACGCCGGCAGACAGCGCCGAGGCATCATCGTCTGCCGGCCGA
GAAATCAAATCGACCGATGCTGGTACGCCTTGGCTGCCTGCTGGCGTGAC
TCCCGTAGCAACCTTTTCTCCCGTCGAGGCGCACTCACAAGCGCCCGCCC
CTATGGAGACCGACCCTGTCCATGATCTTACTTTTAGTATGGTGGGGAGG
ACGATGGAAGAGTTGGAAAGGGAGCAAGATCAGGCGGCTGAGGTCGCTGC
CGTGGCAGAACAGACGATTGCTGCTGCTGCCTCGACGGGGACTACAGCAG
GCAACAGCGTTGAGGTGGAAAAAAAGGACGGTGCGCGTATGAGTGAAACT
GGCGCAGCGTTCCGCCTAGCGGGTTCCGCGGAGGGATCGGACGGGCGTGG
ACACGATGGACAGGTGGTCGCTCCTTGTCTCTAG
back to top