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Homology
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI) HSP 1 Score: 175 bits (443), Expect = 9.530e-53 Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1
Query: 1 MRLLATAVALVVPCLTHGFTP--TIPSLQIAPRSSLPLRCPSCRFNTIMNNLDSTHAKIKVAGTVLLGGALLATGLVDSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDVFL 534
MRL ALV P F T PS +P S+ LRC S R M L + + G VL+GGAL+ TG +D VARADVSISPRCITGEGA C+DLAEG ELIKSLQAKS +SKD++F+ETL+ YN HNFKDYF+AE+KHMV+H G+YEILTN +YA AEKAGKV+ DVFL
Sbjct: 1 MRLHVILAALVGPSCVESFAVLCTAPSSSTSPVSTS-LRCRSTRT---MMTLPTAGDLNRALGAVLVGGALI-TGAMD---VARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKDYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFL 172
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: A0A835ZAV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 3.290e-12 Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 178 AGTVLLGGALLATGLV----DSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDVFL 534
AG+VL A+LA + D + R ++ C G G C AEG +LI+ LQ +S + + ++ LE YNEHNF DYF+ NK MVR +Y +++ +YA AEKAG V + ++
Sbjct: 45 AGSVLASAAVLAAPQLVLADDRPSILRQEI-----CEVGVGDGCAQAAEGSDLIRKLQQRSAERRAEREQQMLETYNEHNFADYFKTLNKRMVRKGPNQYVLMSETEYAAAEKAGLVYDNKYI 162
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO) HSP 1 Score: 60.1 bits (144), Expect = 3.410e-8 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 208 LATGLVDSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDV 528
L V S+ A A +S S C G G C DL+EG ELI+SLQ KS ++++++ +E L+ Y N+ D+F K +V+ DG + L + + + ++ GKV ++
Sbjct: 31 LVGAFVASSSPAEAVIS-SKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKVTFEI 136
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 181.0 |
Seed ortholog evalue | 4.8e-43 |
Seed eggNOG ortholog | 2880.D7FLT7 |
Hectar predicted targeting category | signal peptide |
EggNOG OGs | 2CACH@1,2SH2H@2759 |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-26_001300.1 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 4 |
Model size | 540 |
Cds size | 540 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928924.0580769-CDS-F-serratus_M_contig1075:72835..73106 | 1622928924.0580769-CDS-F-serratus_M_contig1075:72835..73106 | Fucus serratus male | CDS | F-serratus_M_contig1075 72836..73106 + |
1690962631.4160206-CDS-F-serratus_M_contig1075:72835..73106 | 1690962631.4160206-CDS-F-serratus_M_contig1075:72835..73106 | Fucus serratus male | CDS | F-serratus_M_contig1075 72836..73106 + |
1622928924.076958-CDS-F-serratus_M_contig1075:75333..75474 | 1622928924.076958-CDS-F-serratus_M_contig1075:75333..75474 | Fucus serratus male | CDS | F-serratus_M_contig1075 75334..75474 + |
1690962631.4304087-CDS-F-serratus_M_contig1075:75333..75474 | 1690962631.4304087-CDS-F-serratus_M_contig1075:75333..75474 | Fucus serratus male | CDS | F-serratus_M_contig1075 75334..75474 + |
1622928924.0899115-CDS-F-serratus_M_contig1075:75862..75903 | 1622928924.0899115-CDS-F-serratus_M_contig1075:75862..75903 | Fucus serratus male | CDS | F-serratus_M_contig1075 75863..75903 + |
1690962631.440335-CDS-F-serratus_M_contig1075:75862..75903 | 1690962631.440335-CDS-F-serratus_M_contig1075:75862..75903 | Fucus serratus male | CDS | F-serratus_M_contig1075 75863..75903 + |
1622928924.1048648-CDS-F-serratus_M_contig1075:76472..76559 | 1622928924.1048648-CDS-F-serratus_M_contig1075:76472..76559 | Fucus serratus male | CDS | F-serratus_M_contig1075 76473..76559 + |
1690962631.449587-CDS-F-serratus_M_contig1075:76472..76559 | 1690962631.449587-CDS-F-serratus_M_contig1075:76472..76559 | Fucus serratus male | CDS | F-serratus_M_contig1075 76473..76559 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1075.727.1 >prot_F-serratus_M_contig1075.727.1 ID=prot_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=polypeptide|length=180bp
MRLLATAVALVVPCLTHGFTPTIPSLQIAPRSSLPLRCPSCRFNTIMNNL DSTHAKIKVAGTVLLGGALLATGLVDSAGVARADVSISPRCITGEGANCD DLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRH KDGRYEILTNEDYAEAEKAGKVKKDVFLE* back to topmRNA from alignment at F-serratus_M_contig1075:72836..76559+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1075.727.1 ID=mRNA_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=mRNA|length=3724bp|location=Sequence derived from alignment at F-serratus_M_contig1075:72836..76559+ (Fucus serratus male) ATGCGTCTGCTTGCTACTGCAGTTGCCTTAGTGGTACCTTGCCTCACACA
TGGCTTCACGCCGACGATACCTTCATTGCAGATAGCACCCCGAAGCAGTT
TGCCCTTACGGTGTCCTTCATGCCGCTTCAATACTATCATGAACAACTTG
GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG
CGCTCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCAG
ACGTATCCATCAGTCCCAGATGTGAGCAAAGGTGCATGGAAAAGTCATGG
AAGACTTGCTTACGTCTTTGAAGAAAAATCTGAACGCATTTAGACCTTCT
GAACATCCCTCAACCAGGGGGAATGCCCCGCAGATCGAATACGTACTACC
AGTATAGTATAGACCTAAATAACACAACCGGCAAGAGAGGTTCGAGCACG
AGATGTCTTGTTGGGCGAGTTAGAGCCACACTCTGTACAGTGCCTACTGC
TGTACGTATGTCACTTTCTGCCGATGCGGCCTGCCATTGTGCTACAGACA
GCAACGATTTCCATCCCGCATGCGGTGCTAGAGAATCCCCGTGTACATAA
TACTACTAGTCTCTACACGGTTAATAAATGTCTACTTCGGAGTATAATAT
TACCATCTACTATTACGGACTACGTACGCGACGTAAGTTCAGCTCTCCTG
ATGTCTGGATACGTACTGTATGCCTTGTCAGCAGATGTAATGGTTGAATT
TTGTCCCTACGAGCAGCGGTGATATCGTAGACTGGAGATAGCCGTGTTTT
ATTTTTGTGGGCTGCGTACGCTGATGAAGCTTTCTATGTCCTATTCCAGC
AGGCCAAAAGCGAGATTGGCCACGATGCACAGGTAGACGTCCTCAAGTTA
TCTACCGATGTCCTGGACGTGGGAGTGCGAGAAATCATAAATAGCAACAA
CTGACCTCTCGTGACCCTCTACGGAAATGAAGAAAAAGATCAACTCGATG
AGATTCGACCTCATATATTCCGGGTAACACAGGTATTTTGTATAGCAGTC
ACTCTTTCGACGCAGACCGAGGGGGGGGGGGGGTACTATTGATATGTAGC
GTGTAGGACCCCAGACCTTAGACGTGTACAGTAGTATGTAGATTCGCAAC
ACGAAAATTCCTGGGTTTTTTTCGTCCCGCAGCGTTAATCCCACCGCAGG
TCTGCGGGTGAAATTACCTCCCAAGAAAACATCTCGAGCCCTCCTCCTCC
TGTTGAGCTGTGGTCTTTTGCCGCCCCGGCTGTTTTAGACCGTTGCTATT
GTTCCCGTTCCTCGATTTTTCATAGCGTTGTTGTTGCGACCGAGCCAACC
GTGAGATACATGTGTCGAGTAATCACGCTCTCAATCGTAAACCTCTGCCT
TCACAACTAGCAATCAACTATAATACCAATTAACTATAATACAAGTACCA
ATCAACTAGCGACTATGACCGCAAAGAGGTATTGAGACCGGACTCGGTTG
CTCAGTCTCGGAGACACTCACTCCCCTACCCACGTGGACAGTGATTCGAA
AAATATATCCGGATTTGCTCTAATTACATGGTCTATAGTTCTGTGGATAA
AAGGGGGTAAAATATATTCCACAGAGTAAGCGGTAGCCGCTTTGTGGTGG
CCAATCCCACTCGTTTTTTTTGTTTCTTGTTTATATCACACTATGAACTG
ACCCGCTACGTATCCAGCCGTGGTCACAAAATAGGCGGAACCAAACCAAA
TCAAACCGGGAGTACGGTCGGAGAAAAAAAACAGGTAGAACAGAAAGAAG
GACACGAACCAAAAAGTAGCCAGCAAAGGACATCGTCGCCATGCAGGAAG
GGACACAGACGAAACGAAAATAAGTATAAAACAAACAAGAAACAAGAAAT
AAGGCCGAATTTTCACGGCCCCCTTCTCCCCTAAAATGTTTATATGATAT
CGCGAGATAGACATATTCATAGCTCGGATGTCCCGTCCCGCCCCTGATCA
GGCCGCTCATTCTCTACGCCCAGGCTGAATCTATTAATATATCAATCTGA
GTGCTTACTCACGAGTTCCTCTCCTTCCTCGCGCTTTCCGCGACGATGCT
CATCTATACCATCAATCTCCATTGGGTCAGTCCCGAGTTTATCAGGTCAC
GCAGCTGCGTCCCGATGCCGTCCTCACTGCCGAGAGTCCGCCGGCACATG
ACCAGCAGCCCCCGATGTCCCTATAGTGATGTTGGGGTGCTGCCTGTTCA
GATAAGCCCTTGGACCAATCAATGACACCCCTCTTGTCCTACAGCCACCA
CTACTGTACCAGTATAGGAATCAGTGGGAACTCGCGACTTCCGCACGTGG
TCAAGAAAAAAAACATACAGGTTACCTACTCCGACGATCGACCACTATGG
CGACAAGAATTACGTTACATTATATAGCATGACATGCAAGCAGTACGGTG
CTGACGAAGGGTCTATGGCGTTGGGATGACGTTCACGGCCACGTGCAGGT
ATCACAGGCGAGGGGGCGAACTGTGACGACTTGGCAGAGGGGATCGAACT
TATCAAGAGCCTTCAGGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCA
AGGAAACGCTCGAAAAGTACAACGAGCACAACTTTAAAGGTGTGCTGCAA
GTGCTGCAACTATAGGCTCTCCTCGACCCGATCTGTTGGTATCATACCTA
GTATTCCAAAGAGCGCGAAGGGTACATAGGGATTATCGGGCTGCTGACTC
ATGCAGCTGTACAGGACGCGTCCCGGTTTTCTTCGCGTTACAATGCGCGT
TCGCGTGTGCTTTATGTCGACCCATCTATATCAATTTTCGCGTCATATCG
TAGCATGTGCTGGTCGGGAGGCAATCATTAGTACCATTATGAAATAACTC
GGCTCGGTAGATGCAGCTATGGGTAAAAGCAGGGCACTGTGTACTGTACT
GCACGTGTGATGGAACACATGGAAGACATCCTTCAACGAAATCGGCCGCT
CCCACGATGCGCTCACATTTTGCGCAGATTATTTTCGCGCAGAGAACAAG
CACATGGTGAGGCACAAGGTGAGCTGGCTGACTCCCATCACCTTCTGATC
GCAGGTTCTTTGTCGATGATACTGCAATCCGCTCGACTAAGTACATGTGC
CTCTAATCTGTTCGGGATTCGCAAGCGCATGAGCCTATAATCCGCCACAA
GTATTGAACCTACCTTCACAAGCTTTTGAGGGTCTCTCTGCAGCAGCGAA
TACGAGATGACAAGAAAATACCACGTTGTTGGCCGGCCAGGGGCTGAACT
TGTGCAGGGCAAGAACCGTGATACGATTCCCTTCAAACACGAAAACCTAC
TGTCCTGAGAGAAAACACCCTTATATAAGGATGAACAAGGTCCCGTCTAT
TTTCGACTGTTTATTCAGATTTGGACGTCAAAAGCTCCCGTGTCGCATCT
CTCTGTGCCCTACATTAGACACTATTACTAATTAATCGGAGGACGGTACA
AAGTACAACAATCGCGATACTAAAAAGAATACAATTATGTCCTTGCACAT
TTTCCAGCAGAGCATTATTCTTTCTCCCGATTGTTGCCGACTGTCGTAAC
CCCGTTGTACTGTTGGCGGTTATGCTCCTTCTCCCAGGACGGACGGTACG
AGATTCTCACGAATGAGGACTATGCCGAGGCAGAGAAGGCTGGGAAGGTC
AAGAAAGACGTTTTCTTGGAATGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1075:72836..76559+ >mRNA_F-serratus_M_contig1075.727.1 ID=mRNA_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig1075:72836..76559+ (Fucus serratus male) ATGCGTCTGCTTGCTACTGCAGTTGCCTTAGTGGTACCTTGCCTCACACA TGGCTTCACGCCGACGATACCTTCATTGCAGATAGCACCCCGAAGCAGTT TGCCCTTACGGTGTCCTTCATGCCGCTTCAATACTATCATGAACAACTTG GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG CGCTCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCAG ACGTATCCATCAGTCCCAGATATGCGTCTGCTTGCTACTGCAGTTGCCTT AGTGGTACCTTGCCTCACACATGGCTTCACGCCGACGATACCTTCATTGC AGATAGCACCCCGAAGCAGTTTGCCCTTACGGTGTCCTTCATGCCGCTTC AATACTATCATGAACAACTTGGATTCAACGCATGCGAAGATCAAAGTTGC TGGCACGGTGCTGCTTGGAGGCGCTCTGCTGGCAACGGGACTCGTTGATA GCGCTGGCGTTGCGAGGGCAGACGTATCCATCAGTCCCAGATGTATCACA GGCGAGGGGGCGAACTGTGACGACTTGGCAGAGGGGATCGAACTTATCAA GAGCCTTCAGGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCAAGGAAA CGCTCGAAAAGTACAACGAGCACAACTTTAAAGGTATCACAGGCGAGGGG GCGAACTGTGACGACTTGGCAGAGGGGATCGAACTTATCAAGAGCCTTCA GGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCAAGGAAACGCTCGAAA AGTACAACGAGCACAACTTTAAAGATTATTTTCGCGCAGAGAACAAGCAC ATGGTGAGGCACAAGATTATTTTCGCGCAGAGAACAAGCACATGGTGAGG CACAAGGACGGACGGTACGAGATTCTCACGAATGAGGACTATGCCGAGGC AGAGAAGGCTGGGAAGGTCAAGAAAGACGTTTTCTTGGAATGAGACGGAC GGTACGAGATTCTCACGAATGAGGACTATGCCGAGGCAGAGAAGGCTGGG AAGGTCAAGAAAGACGTTTTCTTGGAATGA back to top
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