mRNA_F-serratus_M_contig1075.727.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.727.1
Unique NamemRNA_F-serratus_M_contig1075.727.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 9.530e-53
Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1 
Query:    1 MRLLATAVALVVPCLTHGFTP--TIPSLQIAPRSSLPLRCPSCRFNTIMNNLDSTHAKIKVAGTVLLGGALLATGLVDSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDVFL 534
            MRL     ALV P     F    T PS   +P S+  LRC S R    M  L +     +  G VL+GGAL+ TG +D   VARADVSISPRCITGEGA C+DLAEG ELIKSLQAKS +SKD++F+ETL+ YN HNFKDYF+AE+KHMV+H  G+YEILTN +YA AEKAGKV+ DVFL
Sbjct:    1 MRLHVILAALVGPSCVESFAVLCTAPSSSTSPVSTS-LRCRSTRT---MMTLPTAGDLNRALGAVLVGGALI-TGAMD---VARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKDYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFL 172
[Close]
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: A0A835ZAV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.290e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:  178 AGTVLLGGALLATGLV----DSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDVFL 534
            AG+VL   A+LA   +    D   + R ++     C  G G  C   AEG +LI+ LQ +S   + +  ++ LE YNEHNF DYF+  NK MVR    +Y +++  +YA AEKAG V  + ++
Sbjct:   45 AGSVLASAAVLAAPQLVLADDRPSILRQEI-----CEVGVGDGCAQAAEGSDLIRKLQQRSAERRAEREQQMLETYNEHNFADYFKTLNKRMVRKGPNQYVLMSETEYAAAEKAGLVYDNKYI 162
[Close]
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-8
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  208 LATGLVDSAGVARADVSISPRCITGEGANCDDLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNEDYAEAEKAGKVKKDV 528
            L    V S+  A A +S S  C  G G  C DL+EG ELI+SLQ KS ++++++ +E L+ Y   N+ D+F    K +V+  DG +  L + +  + ++ GKV  ++
Sbjct:   31 LVGAFVASSSPAEAVIS-SKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKVTFEI 136
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLT7_ECTSI9.530e-5359.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAV3_9STRA3.290e-1237.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KK89_FISSO3.410e-834.58Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:72836..76559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue4.8e-43
Seed eggNOG ortholog2880.D7FLT7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CACH@1,2SH2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size540
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.727.1prot_F-serratus_M_contig1075.727.1Fucus serratus malepolypeptideF-serratus_M_contig1075 72836..76559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.0580769-CDS-F-serratus_M_contig1075:72835..731061622928924.0580769-CDS-F-serratus_M_contig1075:72835..73106Fucus serratus maleCDSF-serratus_M_contig1075 72836..73106 +
1690962631.4160206-CDS-F-serratus_M_contig1075:72835..731061690962631.4160206-CDS-F-serratus_M_contig1075:72835..73106Fucus serratus maleCDSF-serratus_M_contig1075 72836..73106 +
1622928924.076958-CDS-F-serratus_M_contig1075:75333..754741622928924.076958-CDS-F-serratus_M_contig1075:75333..75474Fucus serratus maleCDSF-serratus_M_contig1075 75334..75474 +
1690962631.4304087-CDS-F-serratus_M_contig1075:75333..754741690962631.4304087-CDS-F-serratus_M_contig1075:75333..75474Fucus serratus maleCDSF-serratus_M_contig1075 75334..75474 +
1622928924.0899115-CDS-F-serratus_M_contig1075:75862..759031622928924.0899115-CDS-F-serratus_M_contig1075:75862..75903Fucus serratus maleCDSF-serratus_M_contig1075 75863..75903 +
1690962631.440335-CDS-F-serratus_M_contig1075:75862..759031690962631.440335-CDS-F-serratus_M_contig1075:75862..75903Fucus serratus maleCDSF-serratus_M_contig1075 75863..75903 +
1622928924.1048648-CDS-F-serratus_M_contig1075:76472..765591622928924.1048648-CDS-F-serratus_M_contig1075:76472..76559Fucus serratus maleCDSF-serratus_M_contig1075 76473..76559 +
1690962631.449587-CDS-F-serratus_M_contig1075:76472..765591690962631.449587-CDS-F-serratus_M_contig1075:76472..76559Fucus serratus maleCDSF-serratus_M_contig1075 76473..76559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.727.1

>prot_F-serratus_M_contig1075.727.1 ID=prot_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=polypeptide|length=180bp
MRLLATAVALVVPCLTHGFTPTIPSLQIAPRSSLPLRCPSCRFNTIMNNL
DSTHAKIKVAGTVLLGGALLATGLVDSAGVARADVSISPRCITGEGANCD
DLAEGIELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRH
KDGRYEILTNEDYAEAEKAGKVKKDVFLE*
back to top

mRNA from alignment at F-serratus_M_contig1075:72836..76559+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.727.1 ID=mRNA_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=mRNA|length=3724bp|location=Sequence derived from alignment at F-serratus_M_contig1075:72836..76559+ (Fucus serratus male)
ATGCGTCTGCTTGCTACTGCAGTTGCCTTAGTGGTACCTTGCCTCACACA
TGGCTTCACGCCGACGATACCTTCATTGCAGATAGCACCCCGAAGCAGTT
TGCCCTTACGGTGTCCTTCATGCCGCTTCAATACTATCATGAACAACTTG
GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG
CGCTCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCAG
ACGTATCCATCAGTCCCAGATGTGAGCAAAGGTGCATGGAAAAGTCATGG
AAGACTTGCTTACGTCTTTGAAGAAAAATCTGAACGCATTTAGACCTTCT
GAACATCCCTCAACCAGGGGGAATGCCCCGCAGATCGAATACGTACTACC
AGTATAGTATAGACCTAAATAACACAACCGGCAAGAGAGGTTCGAGCACG
AGATGTCTTGTTGGGCGAGTTAGAGCCACACTCTGTACAGTGCCTACTGC
TGTACGTATGTCACTTTCTGCCGATGCGGCCTGCCATTGTGCTACAGACA
GCAACGATTTCCATCCCGCATGCGGTGCTAGAGAATCCCCGTGTACATAA
TACTACTAGTCTCTACACGGTTAATAAATGTCTACTTCGGAGTATAATAT
TACCATCTACTATTACGGACTACGTACGCGACGTAAGTTCAGCTCTCCTG
ATGTCTGGATACGTACTGTATGCCTTGTCAGCAGATGTAATGGTTGAATT
TTGTCCCTACGAGCAGCGGTGATATCGTAGACTGGAGATAGCCGTGTTTT
ATTTTTGTGGGCTGCGTACGCTGATGAAGCTTTCTATGTCCTATTCCAGC
AGGCCAAAAGCGAGATTGGCCACGATGCACAGGTAGACGTCCTCAAGTTA
TCTACCGATGTCCTGGACGTGGGAGTGCGAGAAATCATAAATAGCAACAA
CTGACCTCTCGTGACCCTCTACGGAAATGAAGAAAAAGATCAACTCGATG
AGATTCGACCTCATATATTCCGGGTAACACAGGTATTTTGTATAGCAGTC
ACTCTTTCGACGCAGACCGAGGGGGGGGGGGGGTACTATTGATATGTAGC
GTGTAGGACCCCAGACCTTAGACGTGTACAGTAGTATGTAGATTCGCAAC
ACGAAAATTCCTGGGTTTTTTTCGTCCCGCAGCGTTAATCCCACCGCAGG
TCTGCGGGTGAAATTACCTCCCAAGAAAACATCTCGAGCCCTCCTCCTCC
TGTTGAGCTGTGGTCTTTTGCCGCCCCGGCTGTTTTAGACCGTTGCTATT
GTTCCCGTTCCTCGATTTTTCATAGCGTTGTTGTTGCGACCGAGCCAACC
GTGAGATACATGTGTCGAGTAATCACGCTCTCAATCGTAAACCTCTGCCT
TCACAACTAGCAATCAACTATAATACCAATTAACTATAATACAAGTACCA
ATCAACTAGCGACTATGACCGCAAAGAGGTATTGAGACCGGACTCGGTTG
CTCAGTCTCGGAGACACTCACTCCCCTACCCACGTGGACAGTGATTCGAA
AAATATATCCGGATTTGCTCTAATTACATGGTCTATAGTTCTGTGGATAA
AAGGGGGTAAAATATATTCCACAGAGTAAGCGGTAGCCGCTTTGTGGTGG
CCAATCCCACTCGTTTTTTTTGTTTCTTGTTTATATCACACTATGAACTG
ACCCGCTACGTATCCAGCCGTGGTCACAAAATAGGCGGAACCAAACCAAA
TCAAACCGGGAGTACGGTCGGAGAAAAAAAACAGGTAGAACAGAAAGAAG
GACACGAACCAAAAAGTAGCCAGCAAAGGACATCGTCGCCATGCAGGAAG
GGACACAGACGAAACGAAAATAAGTATAAAACAAACAAGAAACAAGAAAT
AAGGCCGAATTTTCACGGCCCCCTTCTCCCCTAAAATGTTTATATGATAT
CGCGAGATAGACATATTCATAGCTCGGATGTCCCGTCCCGCCCCTGATCA
GGCCGCTCATTCTCTACGCCCAGGCTGAATCTATTAATATATCAATCTGA
GTGCTTACTCACGAGTTCCTCTCCTTCCTCGCGCTTTCCGCGACGATGCT
CATCTATACCATCAATCTCCATTGGGTCAGTCCCGAGTTTATCAGGTCAC
GCAGCTGCGTCCCGATGCCGTCCTCACTGCCGAGAGTCCGCCGGCACATG
ACCAGCAGCCCCCGATGTCCCTATAGTGATGTTGGGGTGCTGCCTGTTCA
GATAAGCCCTTGGACCAATCAATGACACCCCTCTTGTCCTACAGCCACCA
CTACTGTACCAGTATAGGAATCAGTGGGAACTCGCGACTTCCGCACGTGG
TCAAGAAAAAAAACATACAGGTTACCTACTCCGACGATCGACCACTATGG
CGACAAGAATTACGTTACATTATATAGCATGACATGCAAGCAGTACGGTG
CTGACGAAGGGTCTATGGCGTTGGGATGACGTTCACGGCCACGTGCAGGT
ATCACAGGCGAGGGGGCGAACTGTGACGACTTGGCAGAGGGGATCGAACT
TATCAAGAGCCTTCAGGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCA
AGGAAACGCTCGAAAAGTACAACGAGCACAACTTTAAAGGTGTGCTGCAA
GTGCTGCAACTATAGGCTCTCCTCGACCCGATCTGTTGGTATCATACCTA
GTATTCCAAAGAGCGCGAAGGGTACATAGGGATTATCGGGCTGCTGACTC
ATGCAGCTGTACAGGACGCGTCCCGGTTTTCTTCGCGTTACAATGCGCGT
TCGCGTGTGCTTTATGTCGACCCATCTATATCAATTTTCGCGTCATATCG
TAGCATGTGCTGGTCGGGAGGCAATCATTAGTACCATTATGAAATAACTC
GGCTCGGTAGATGCAGCTATGGGTAAAAGCAGGGCACTGTGTACTGTACT
GCACGTGTGATGGAACACATGGAAGACATCCTTCAACGAAATCGGCCGCT
CCCACGATGCGCTCACATTTTGCGCAGATTATTTTCGCGCAGAGAACAAG
CACATGGTGAGGCACAAGGTGAGCTGGCTGACTCCCATCACCTTCTGATC
GCAGGTTCTTTGTCGATGATACTGCAATCCGCTCGACTAAGTACATGTGC
CTCTAATCTGTTCGGGATTCGCAAGCGCATGAGCCTATAATCCGCCACAA
GTATTGAACCTACCTTCACAAGCTTTTGAGGGTCTCTCTGCAGCAGCGAA
TACGAGATGACAAGAAAATACCACGTTGTTGGCCGGCCAGGGGCTGAACT
TGTGCAGGGCAAGAACCGTGATACGATTCCCTTCAAACACGAAAACCTAC
TGTCCTGAGAGAAAACACCCTTATATAAGGATGAACAAGGTCCCGTCTAT
TTTCGACTGTTTATTCAGATTTGGACGTCAAAAGCTCCCGTGTCGCATCT
CTCTGTGCCCTACATTAGACACTATTACTAATTAATCGGAGGACGGTACA
AAGTACAACAATCGCGATACTAAAAAGAATACAATTATGTCCTTGCACAT
TTTCCAGCAGAGCATTATTCTTTCTCCCGATTGTTGCCGACTGTCGTAAC
CCCGTTGTACTGTTGGCGGTTATGCTCCTTCTCCCAGGACGGACGGTACG
AGATTCTCACGAATGAGGACTATGCCGAGGCAGAGAAGGCTGGGAAGGTC
AAGAAAGACGTTTTCTTGGAATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1075:72836..76559+

>mRNA_F-serratus_M_contig1075.727.1 ID=mRNA_F-serratus_M_contig1075.727.1|Name=mRNA_F-serratus_M_contig1075.727.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig1075:72836..76559+ (Fucus serratus male)
ATGCGTCTGCTTGCTACTGCAGTTGCCTTAGTGGTACCTTGCCTCACACA
TGGCTTCACGCCGACGATACCTTCATTGCAGATAGCACCCCGAAGCAGTT
TGCCCTTACGGTGTCCTTCATGCCGCTTCAATACTATCATGAACAACTTG
GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG
CGCTCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCAG
ACGTATCCATCAGTCCCAGATATGCGTCTGCTTGCTACTGCAGTTGCCTT
AGTGGTACCTTGCCTCACACATGGCTTCACGCCGACGATACCTTCATTGC
AGATAGCACCCCGAAGCAGTTTGCCCTTACGGTGTCCTTCATGCCGCTTC
AATACTATCATGAACAACTTGGATTCAACGCATGCGAAGATCAAAGTTGC
TGGCACGGTGCTGCTTGGAGGCGCTCTGCTGGCAACGGGACTCGTTGATA
GCGCTGGCGTTGCGAGGGCAGACGTATCCATCAGTCCCAGATGTATCACA
GGCGAGGGGGCGAACTGTGACGACTTGGCAGAGGGGATCGAACTTATCAA
GAGCCTTCAGGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCAAGGAAA
CGCTCGAAAAGTACAACGAGCACAACTTTAAAGGTATCACAGGCGAGGGG
GCGAACTGTGACGACTTGGCAGAGGGGATCGAACTTATCAAGAGCCTTCA
GGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCAAGGAAACGCTCGAAA
AGTACAACGAGCACAACTTTAAAGATTATTTTCGCGCAGAGAACAAGCAC
ATGGTGAGGCACAAGATTATTTTCGCGCAGAGAACAAGCACATGGTGAGG
CACAAGGACGGACGGTACGAGATTCTCACGAATGAGGACTATGCCGAGGC
AGAGAAGGCTGGGAAGGTCAAGAAAGACGTTTTCTTGGAATGAGACGGAC
GGTACGAGATTCTCACGAATGAGGACTATGCCGAGGCAGAGAAGGCTGGG
AAGGTCAAGAAAGACGTTTTCTTGGAATGA
back to top