mRNA_F-serratus_M_contig1043.443.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1043.443.1
Unique NamemRNA_F-serratus_M_contig1043.443.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Match: A0A6H5KN83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN83_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.150e-44
Identity = 131/335 (39.10%), Postives = 159/335 (47.46%), Query Frame = 1
Query:    1 MSGLDYSKWDKMASEMSDSDEDDGDIGSSPQVTAFDKPQSVTFGGAAPPAKQALRLNDDSSIKRSGSDDISKSNS--------SEGATTAG--------------------------------GR--LSYVWRQTSSEVIVVVPAPPETRAADVLVSLTHKQETIAEGVVDFLKVAVTTGRRRD--ISNATNTRGSARGASPCRV---------QKGHGREEEDE-----------------------------------------------RKEVLVLLE-------VTLWWKSLMKGGPEIDVSAIQGRPVNKHRTAWEEALGMFKEKVAKRK 684
            MSG+DYSKWDKMASEMSDSD+D+G+   +P+VT FD+PQSVTFGG +  A QA    D +S       D + S+S        S GA  A                                 GR  L YVWRQT +EV+VVVP P  TRA DV VSL  K ETIAEGV D ++VAV   R RD   S    T  +A G     V         Q   G E+E E                                               R+ V ++L+         +WWKSL+KGGPEIDV+AI+GR  N H++ WEEALGMFKE+VA RK
Sbjct:    1 MSGVDYSKWDKMASEMSDSDDDNGN---NPEVTTFDQPQSVTFGGTS--ASQAAEGWDGASDDSGAHPDTTPSSSGVAAPADGSTGAVAAAATGTTPTPQVKPLISDERLTENGAAVRGDANAGRQALQYVWRQTRAEVVVVVPVPAGTRAGDVEVSLRAKPETIAEGVADLIRVAVKATRGRDGAASRELGTAATAPGGGTKLVPVLEGELAFQAKLGAEDEGEVEWELKDYPGTAVARDDPDSSGDPVGSAPPPAPAAGAREASSSSNGDRRGVEIVLKKHCPVPNAAVWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKEQVAARK 330          
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Match: A0A836CJH1_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.590e-18
Identity = 83/280 (29.64%), Postives = 125/280 (44.64%), Query Frame = 1
Query:   10 LDYSKWDKMASEMSDSDEDDGDIGSSPQVTAFDKPQSVTFGGAAPPAKQALRLNDD-----------SSIKRSGSDDISKSNSSE-----------GATTAG--GRLSYVWRQTSSEVIVVVPAPPETRAADVLVSLT---------------HKQETIAEGVVDF-----LKVAVTTGRRRDISNATNTRG-SARGASPCRVQKGHGREEEDERKEVLVLLEVTL-----------WWKSLMKGGPEIDVSAIQGRPV---NKHRTAWEEALGMFKEKV 672
            +DYSKWDKMA++MSDS++++G  GS P VTAFD P SVT+GG   P ++ L                SS    G+DD  ++  ++           GA      G  +Y W Q+  +V + V APP TRA++V V +T               H  +  A+G +         VA+       +       G  AR A    V+      ++   +     + VTL           WWK  +KGGP ID++AI+GR     +  +  W+EA+  F+ +V
Sbjct:    2 VDYSKWDKMAADMSDSEDEEG--GSKPVVTAFDNPTSVTWGGGDAPEEERLXXXXXXXXXXXXXXXXSSAGTPGADDSKRAALTDKPARLLTLTRNGAAVQDDCGAYTYFWSQSRGDVAITVVAPPGTRASEVEVKVTSDASAPTLAAQAPLGHHLKVSAKGAILLEGDLTYPVALDPDDPESVDWVLQDLGLPARPAPESAVESDVSTADQSSERSPARAITVTLRKHSPIAGAALWWKGAVKGGPTIDMAAIEGRDAKGASASQKVWDEAMEGFRARV 279          
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Match: A0A1J4MGJ4_9CRYT (Nuclear move domain-containing protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MGJ4_9CRYT)

HSP 1 Score: 85.1 bits (209), Expect = 1.990e-16
Identity = 77/241 (31.95%), Postives = 116/241 (48.13%), Query Frame = 1
Query:    1 MSGLDYSKWDKMASEMSDSDEDDGDIGSSPQVTAFDKPQSVTFGGAAPPAKQALR----LNDD---SSIKRSGSDDISKSNSSEGATTAGGRLSYVWRQTSSEVIVVVPAPPETRAADVLVSLTHKQETIAEGVVDFLKVAVTTGRRRDISNATNTRGSARGASPCRVQKGHGREEEDERKEVLVLLEVTLWWKSLMKGGPEIDVSAIQ--GRPVNKHRT-----AWEEALGMFKEKVAKR 681
            MSG+DYSKWDK+  E+S SDE+ G +GS   VT FD PQS+T GG     + +L     L DD    S+  S    IS  +   G  +A G+  Y W QT + + +++   P T+  D+ V++T  + T+  G    L      G + D +    +       +  + ++      E E+KE+     + LWWK + KGG E D+S       P ++ R      AWEEA   F+ K+  R
Sbjct:    1 MSGIDYSKWDKI--EIS-SDEESGKLGSKCNVTRFDSPQSITIGGQRESKEDSLVSSNILVDDLKTKSVLVSREKVISLDDYVFGGKSACGK-DYYWTQTENGLTIILEIDPGTQNKDLKVNVTEDKVTVTHGSETILFEEFEYGVKDDDNTIFWSVKEVESLNGAQNKRSRMLVLELEKKELDT--SIRLWWKKIFKGGIEADISKFSRFSSPKSEERNRKFLEAWEEAHNEFRNKIKNR 235          
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Match: A0A2P4YYV1_9CRYT (CS domain protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=A0A2P4YYV1_9CRYT)

HSP 1 Score: 63.9 bits (154), Expect = 1.160e-8
Identity = 62/243 (25.51%), Postives = 110/243 (45.27%), Query Frame = 1
Query:    1 MSGLDYSKWDKMASEMSDSDEDDGDIGSSPQVTAFDKPQSVTFGGAAPPAKQALRLNDDSSIKR---------SGSDDISKSNSSEGATTAGGRLSYVWRQTSSEVIVVVPAPPETRAADVLVSLTHKQETIAEGVVDFLKVAVTTGRRRDISNATNTRGSARGASPCRVQKGHGREEEDERKEVLVLLEVTLWWKSLMKGGPEIDVSAI-------QGRPVNKHRTAWEEALGMFKEKVAKR 681
            MSG+DYSKWDK+  E+S  +E +  + S   VT FD P S+TFGG    +++  ++N D  ++          S    +S ++   G  +  G+ +Y W QT +++ +V+   PE ++ D  V++T    TI  G+   L        + D +    +          + ++   +    E ++  +   + +WWK + KGG E D+S         +     K    WE+A   F+ K+  R
Sbjct:    1 MSGIDYSKWDKI--EISSDEESEKSV-SRCNVTRFDSPHSITFGGHIE-SEEDNKVNSDVKVEEFKKIEPGHVSREKILSLNDYVFGGKSKNGK-NYYWTQTENDLTIVIEISPEMQSKDFKVNVTESDITIMYGLETILLEKFEYEVKYDDNTIFWSIKDVESFDKVQNKRIINKMLVLELEKKELNNSIRIWWKRIFKGGIETDISKFNRFTSSNKEERNKKFLQVWEKAHDEFRNKIKNR 238          
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Match: A0A7S0KK22_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KK22_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.230e-5
Identity = 47/171 (27.49%), Postives = 72/171 (42.11%), Query Frame = 1
Query:  250 GRLSYVWRQTSSEVIVVVPAPPETRAADVLVSLTHKQETIAEGVVDFLKVAVTTGRRRDISN-------ATNTRGSARGASPCRVQ-----------KGHGREEEDERKEVLVLLE------VTLWWKSLMKGGPEIDVSAIQGRPVNKH---RTAWEEALGMFKEKVAKR 681
            G + Y WRQ + E    V   P+T+A DV V ++ ++  I+        V    G  R++         A   R        CR             +GHG   +D R+ V V +       +  WW+S +KGGPE+D    + R   K    +T W +A  MF+E++A R
Sbjct:  145 GAVRYFWRQDAKEATASVVVAPKTKAKDVRVDVSAREVKIS--------VMKDGGEIREVFRGEWAHEIAEEPRDEDEDDIGCRAAPTFGDWEITDFEGHG---DDARRVVRVTVRKKSSDMLVHWWRSCVKGGPEVDPMTFEDRSATKASQAQTTWAQAQAMFRERIANR 304          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1043.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KN83_9PHAE2.150e-4439.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJH1_9STRA4.590e-1829.64CS domain-containing protein n=1 Tax=Tribonema min... [more]
A0A1J4MGJ4_9CRYT1.990e-1631.95Nuclear move domain-containing protein n=1 Tax=Cry... [more]
A0A2P4YYV1_9CRYT1.160e-825.51CS domain protein n=4 Tax=Cryptosporidium TaxID=58... [more]
A0A7S0KK22_9CHLO1.230e-527.49Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1043contigF-serratus_M_contig1043:53792..54838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size684
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1043.443.1prot_F-serratus_M_contig1043.443.1Fucus serratus malepolypeptideF-serratus_M_contig1043 53792..54838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.2349434-CDS-F-serratus_M_contig1043:53791..539311622928858.2349434-CDS-F-serratus_M_contig1043:53791..53931Fucus serratus maleCDSF-serratus_M_contig1043 53792..53931 -
1690962604.0060883-CDS-F-serratus_M_contig1043:53791..539311690962604.0060883-CDS-F-serratus_M_contig1043:53791..53931Fucus serratus maleCDSF-serratus_M_contig1043 53792..53931 -
1622928858.2483604-CDS-F-serratus_M_contig1043:54141..544451622928858.2483604-CDS-F-serratus_M_contig1043:54141..54445Fucus serratus maleCDSF-serratus_M_contig1043 54142..54445 -
1690962604.013875-CDS-F-serratus_M_contig1043:54141..544451690962604.013875-CDS-F-serratus_M_contig1043:54141..54445Fucus serratus maleCDSF-serratus_M_contig1043 54142..54445 -
1622928858.260325-CDS-F-serratus_M_contig1043:54598..548381622928858.260325-CDS-F-serratus_M_contig1043:54598..54838Fucus serratus maleCDSF-serratus_M_contig1043 54599..54838 -
1690962604.021296-CDS-F-serratus_M_contig1043:54598..548381690962604.021296-CDS-F-serratus_M_contig1043:54598..54838Fucus serratus maleCDSF-serratus_M_contig1043 54599..54838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1043.443.1

>prot_F-serratus_M_contig1043.443.1 ID=prot_F-serratus_M_contig1043.443.1|Name=mRNA_F-serratus_M_contig1043.443.1|organism=Fucus serratus male|type=polypeptide|length=228bp
MSGLDYSKWDKMASEMSDSDEDDGDIGSSPQVTAFDKPQSVTFGGAAPPA
KQALRLNDDSSIKRSGSDDISKSNSSEGATTAGGRLSYVWRQTSSEVIVV
VPAPPETRAADVLVSLTHKQETIAEGVVDFLKVAVTTGRRRDISNATNTR
GSARGASPCRVQKGHGREEEDERKEVLVLLEVTLWWKSLMKGGPEIDVSA
IQGRPVNKHRTAWEEALGMFKEKVAKRK
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mRNA from alignment at F-serratus_M_contig1043:53792..54838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1043.443.1 ID=mRNA_F-serratus_M_contig1043.443.1|Name=mRNA_F-serratus_M_contig1043.443.1|organism=Fucus serratus male|type=mRNA|length=1047bp|location=Sequence derived from alignment at F-serratus_M_contig1043:53792..54838- (Fucus serratus male)
ATGAGTGGGTTGGACTACTCTAAGTGGGATAAGATGGCGAGCGAAATGAG CGACAGCGACGAAGACGATGGTGATATCGGTAGTAGCCCTCAGGTTACTG CATTCGACAAGCCACAGTCGGTTACCTTCGGTGGCGCAGCACCTCCAGCT AAGCAGGCGCTACGACTCAATGATGACTCGAGTATAAAGAGAAGCGGCAG TGACGACATCAGCAAGTCAAATAGCTCCGAAGGCGCTACGGTGACCGTAC CGACGGATAGATCAAACGCCAAAGCAGTGGGTAATGACCGCGATACCGGC ACAGTCTCCACCAATGCCGCCTCGCAGACCCCGAGGCCAATCGATGACGG GCGGCTGACGGAGAACGGCATGGCTGTTAGAGAAGGGGACCAGACCGCTG GTGGACGACTCAGCTACGTCTGGCGCCAAACAAGTTCGGAGGTGATTGTG GTGGTCCCAGCGCCTCCGGAGACTCGCGCAGCGGACGTTTTGGTTTCCTT GACGCACAAGCAGGAGACCATCGCAGAGGGTGTGGTGGACTTCCTCAAGG TAGCGGTGACGACCGGAAGGCGGCGTGATATATCTAACGCGACGAATACT CGTGGTTCTGCTCGTGGTGCTTCTCCTTGTCGAGTGCAAAAAGGGCATGG GCGGGAAGAAGAGGATGAGCGGAAGGAGGTGCTGGTGCTCTTGGAAGGTG AGCTCTCGTTCCAGGCAAAGCTCGATGGTGAAGGGGACGCGGACTGGGAG CTGAAGGACTTTCCTGGCACGGTGGTTGCAAGTTCTGTCAGCTTTCGTGG CAACGACGGTTCACCTCCTGGTGCTGCTGCTGATGCTCAAGAGCTGCCCG TTCCTGATTGCCGGGGAATCGAAGTGACGCTGGCAAAGCACAGTCGATTA CCGGGAGTTACTTTGTGGTGGAAATCGTTGATGAAAGGCGGGCCAGAAAT TGACGTATCGGCCATCCAGGGTCGCCCGGTGAACAAGCATCGTACGGCCT GGGAAGAGGCACTTGGGATGTTCAAAGAAAAGGTGGCAAAACGAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1043:53792..54838-

>mRNA_F-serratus_M_contig1043.443.1 ID=mRNA_F-serratus_M_contig1043.443.1|Name=mRNA_F-serratus_M_contig1043.443.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig1043:53792..54838- (Fucus serratus male)
ATGAGTGGGTTGGACTACTCTAAGTGGGATAAGATGGCGAGCGAAATGAG
CGACAGCGACGAAGACGATGGTGATATCGGTAGTAGCCCTCAGGTTACTG
CATTCGACAAGCCACAGTCGGTTACCTTCGGTGGCGCAGCACCTCCAGCT
AAGCAGGCGCTACGACTCAATGATGACTCGAGTATAAAGAGAAGCGGCAG
TGACGACATCAGCAAGTCAAATAGCTCCGAAGGCGCTACGATGAGTGGGT
TGGACTACTCTAAGTGGGATAAGATGGCGAGCGAAATGAGCGACAGCGAC
GAAGACGATGGTGATATCGGTAGTAGCCCTCAGGTTACTGCATTCGACAA
GCCACAGTCGGTTACCTTCGGTGGCGCAGCACCTCCAGCTAAGCAGGCGC
TACGACTCAATGATGACTCGAGTATAAAGAGAAGCGGCAGTGACGACATC
AGCAAGTCAAATAGCTCCGAAGGCGCTACGACCGCTGGTGGACGACTCAG
CTACGTCTGGCGCCAAACAAGTTCGGAGGTGATTGTGGTGGTCCCAGCGC
CTCCGGAGACTCGCGCAGCGGACGTTTTGGTTTCCTTGACGCACAAGCAG
GAGACCATCGCAGAGGGTGTGGTGGACTTCCTCAAGGTAGCGGTGACGAC
CGGAAGGCGGCGTGATATATCTAACGCGACGAATACTCGTGGTTCTGCTC
GTGGTGCTTCTCCTTGTCGAGTGCAAAAAGGGCATGGGCGGGAAGAAGAG
GATGAGCGGAAGGAGGTGCTGGTGCTCTTGGAAGACCGCTGGTGGACGAC
TCAGCTACGTCTGGCGCCAAACAAGTTCGGAGGTGATTGTGGTGGTCCCA
GCGCCTCCGGAGACTCGCGCAGCGGACGTTTTGGTTTCCTTGACGCACAA
GCAGGAGACCATCGCAGAGGGTGTGGTGGACTTCCTCAAGGTAGCGGTGA
CGACCGGAAGGCGGCGTGATATATCTAACGCGACGAATACTCGTGGTTCT
GCTCGTGGTGCTTCTCCTTGTCGAGTGCAAAAAGGGCATGGGCGGGAAGA
AGAGGATGAGCGGAAGGAGGTGCTGGTGCTCTTGGAAGTTACTTTGTGGT
GGAAATCGTTGATGAAAGGCGGGCCAGAAATTGACGTATCGGCCATCCAG
GGTCGCCCGGTGAACAAGCATCGTACGGCCTGGGAAGAGGCACTTGGGAT
GTTCAAAGAAAAGGTGGCAAAACGAAAGTTACTTTGTGGTGGAAATCGTT
GATGAAAGGCGGGCCAGAAATTGACGTATCGGCCATCCAGGGTCGCCCGG
TGAACAAGCATCGTACGGCCTGGGAAGAGGCACTTGGGATGTTCAAAGAA
AAGGTGGCAAAACGAAAG
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