mRNA_F-serratus_M_contig1039.399.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 79.0 bits (193), Expect = 7.720e-15 Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 28 LRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDLQGRG 324 +RQA LP+REGGLG+ S+ I G A+IG ALVL R + A+ NL L L E P A AL EL+ + A S+I E VG+SWAA+A +D RG Sbjct: 1578 IRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARALVATNATNLSHELAVLAETPYAQALTGELRKLPKYASGSEITEMVGTSWAAIALNKDPANRG 1676
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.740e-11 Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK +A + ++E+AVG SWA LA ++L Sbjct: 210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLAEIIIQDKLEKAVGQSWAKLATSDEL 305
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5L7H4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H4_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.910e-11 Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLPIREGGLG+TSS I+ +A++ ALV + V AS + L +L + P ALI+ LK + + ++E AVG SW L +DL Sbjct: 41 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKLVTSDDL 136
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.300e-11 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++L Sbjct: 544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 639
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.300e-11 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++L Sbjct: 210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 305
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.350e-11 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++L Sbjct: 544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 639
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.360e-11 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++L Sbjct: 392 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 487
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.390e-11 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++L Sbjct: 177 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 272
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KSR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR9_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 6.270e-11 Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLP+REGGLG+TS+ I+ +A++ ALV + V AS + L RL + P ALI+ LK + + ++E+AVG SWA LA ++ Sbjct: 43 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEF 138
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 7.980e-11 Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 Query: 25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312 A Q HLPIREGGLG+TSS I+ +A++ ALV + V AS + L +L + P ALI+ LK + + ++E AVG SW L +DL Sbjct: 391 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKLVTSDDL 486 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1039.399.1 >prot_F-serratus_M_contig1039.399.1 ID=prot_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=polypeptide|length=109bp NQTYLGHEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASback to top mRNA from alignment at F-serratus_M_contig1039:39128..39454+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1039.399.1 ID=mRNA_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=mRNA|length=327bp|location=Sequence derived from alignment at F-serratus_M_contig1039:39128..39454+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1039:39128..39454+ >mRNA_F-serratus_M_contig1039.399.1 ID=mRNA_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig1039:39128..39454+ (Fucus serratus male)back to top |