mRNA_F-serratus_M_contig1039.399.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1039.399.1
Unique NamemRNA_F-serratus_M_contig1039.399.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 7.720e-15
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:   28 LRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDLQGRG 324
            +RQA LP+REGGLG+ S+  I G A+IG  ALVL R + A+   NL   L  L E P A AL  EL+ +   A  S+I E VG+SWAA+A  +D   RG
Sbjct: 1578 IRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARALVATNATNLSHELAVLAETPYAQALTGELRKLPKYASGSEITEMVGTSWAAIALNKDPANRG 1676
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BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.740e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +A    + ++E+AVG SWA LA  ++L
Sbjct:  210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLAEIIIQDKLEKAVGQSWAKLATSDEL 305
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5L7H4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.910e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLPIREGGLG+TSS  I+ +A++   ALV  + V AS    +   L +L + P   ALI+ LK +     + ++E AVG SW  L   +DL
Sbjct:   41 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKLVTSDDL 136
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.300e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++L
Sbjct:  544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 639
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.300e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++L
Sbjct:  210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 305
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++L
Sbjct:  544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 639
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++L
Sbjct:  392 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 487
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.390e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++L
Sbjct:  177 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEL 272
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KSR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.270e-11
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA  ++ 
Sbjct:   43 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDEF 138
[Close]
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.980e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAAEEDL 312
            A  Q HLPIREGGLG+TSS  I+ +A++   ALV  + V AS    +   L +L + P   ALI+ LK +     + ++E AVG SW  L   +DL
Sbjct:  391 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKLVTSDDL 486
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1039.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN7.720e-1548.48Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KDI2_9PHAE1.740e-1142.71Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5L7H4_9PHAE1.910e-1141.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCM0_9PHAE3.300e-1141.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKJ7_9PHAE3.300e-1141.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LN63_9PHAE3.350e-1141.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE3.360e-1141.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2W9_9PHAE3.390e-1141.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSR9_9PHAE6.270e-1140.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSY9_9PHAE7.980e-1141.67Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1039contigF-serratus_M_contig1039:39128..39454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.7517238-CDS-F-serratus_M_contig1039:39127..394541622928849.7517238-CDS-F-serratus_M_contig1039:39127..39454Fucus serratus maleCDSF-serratus_M_contig1039 39128..39454 +
1690962599.8096871-CDS-F-serratus_M_contig1039:39127..394541690962599.8096871-CDS-F-serratus_M_contig1039:39127..39454Fucus serratus maleCDSF-serratus_M_contig1039 39128..39454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1039.399.1prot_F-serratus_M_contig1039.399.1Fucus serratus malepolypeptideF-serratus_M_contig1039 39128..39454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1039.399.1

>prot_F-serratus_M_contig1039.399.1 ID=prot_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=polypeptide|length=109bp
NQTYLGHEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAAS
ARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAA
EEDLQGRG*
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mRNA from alignment at F-serratus_M_contig1039:39128..39454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1039.399.1 ID=mRNA_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=mRNA|length=327bp|location=Sequence derived from alignment at F-serratus_M_contig1039:39128..39454+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAGAGGACCTCCAAGGGAGGGGATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1039:39128..39454+

>mRNA_F-serratus_M_contig1039.399.1 ID=mRNA_F-serratus_M_contig1039.399.1|Name=mRNA_F-serratus_M_contig1039.399.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig1039:39128..39454+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAGAGGACCTCCAAGGGAGGGGATAGAATCAGACCTACCTGGGACACGA
GGCCCTACGGCAGGCCCACCTGCCAATTCGAGAAGGCGGCCTTGGGCTCA
CCAGCAGTAGCTCCATCAAAGGCGCAGCATATATCGGATGTCACGCCCTG
GTCCTGGGGCGGGTCGTCGCTGCCTCCGCCCGGGGGAACCTTCCATCCCT
TCTTGAACGGCTGCCTGAGCGACCCATGGCGTCAGCGCTTATTGAAGAGC
TAAAGACCGTGGCTACCGAAGCCAAGAGAAGCCAGATAGAGGAGGCAGTG
GGCAGTTCGTGGGCAGCCCTAGCGGCGGAAGAGGACCTCCAAGGGAGGGG
ATAG
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