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Homology
BLAST of mRNA_F-serratus_M_contig1030.348.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI) HSP 1 Score: 203 bits (516), Expect = 8.130e-61 Identity = 97/156 (62.18%), Postives = 116/156 (74.36%), Query Frame = 2
Query: 245 PTVQEGLFVKNNWIFKRDFFFKRDQPRNGQDVVDMRANRLAKFGKSGEVGYWKVERRAPPGAKRNLKLALQNGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAIMFADEGKIFVARAKEELTGTAAAARKNIGTFKVDLATLPPIVDRTFTL 712
P VQ+G F K +W RDFFFKRDQ +NG D + R N+LA+F SGEVGYWK+ RR PGA + G D LVLD+PEQG R++LIVSYEIP++ GRYHPS+IMFA +G I+VA AKE+L G AAAARK IG+F VDL TL P+VDRTFTL
Sbjct: 15 PLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFTL 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-14_004500.1 |
Exons | 4 |
Model size | 1186 |
Cds size | 597 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928839.3611615-UTR-F-serratus_M_contig1030:4064..4182 | 1622928839.3611615-UTR-F-serratus_M_contig1030:4064..4182 | Fucus serratus male | UTR | F-serratus_M_contig1030 4065..4182 + |
1690962595.4957411-UTR-F-serratus_M_contig1030:4064..4182 | 1690962595.4957411-UTR-F-serratus_M_contig1030:4064..4182 | Fucus serratus male | UTR | F-serratus_M_contig1030 4065..4182 + |
1622928839.4393623-UTR-F-serratus_M_contig1030:6435..6906 | 1622928839.4393623-UTR-F-serratus_M_contig1030:6435..6906 | Fucus serratus male | UTR | F-serratus_M_contig1030 6436..6906 + |
1690962595.546315-UTR-F-serratus_M_contig1030:6435..6906 | 1690962595.546315-UTR-F-serratus_M_contig1030:6435..6906 | Fucus serratus male | UTR | F-serratus_M_contig1030 6436..6906 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928839.3800752-CDS-F-serratus_M_contig1030:4182..4320 | 1622928839.3800752-CDS-F-serratus_M_contig1030:4182..4320 | Fucus serratus male | CDS | F-serratus_M_contig1030 4183..4320 + |
1690962595.5043886-CDS-F-serratus_M_contig1030:4182..4320 | 1690962595.5043886-CDS-F-serratus_M_contig1030:4182..4320 | Fucus serratus male | CDS | F-serratus_M_contig1030 4183..4320 + |
1622928839.3974166-CDS-F-serratus_M_contig1030:5094..5157 | 1622928839.3974166-CDS-F-serratus_M_contig1030:5094..5157 | Fucus serratus male | CDS | F-serratus_M_contig1030 5095..5157 + |
1690962595.5158207-CDS-F-serratus_M_contig1030:5094..5157 | 1690962595.5158207-CDS-F-serratus_M_contig1030:5094..5157 | Fucus serratus male | CDS | F-serratus_M_contig1030 5095..5157 + |
1622928839.4123921-CDS-F-serratus_M_contig1030:5848..6058 | 1622928839.4123921-CDS-F-serratus_M_contig1030:5848..6058 | Fucus serratus male | CDS | F-serratus_M_contig1030 5849..6058 + |
1690962595.527383-CDS-F-serratus_M_contig1030:5848..6058 | 1690962595.527383-CDS-F-serratus_M_contig1030:5848..6058 | Fucus serratus male | CDS | F-serratus_M_contig1030 5849..6058 + |
1622928839.4246247-CDS-F-serratus_M_contig1030:6249..6435 | 1622928839.4246247-CDS-F-serratus_M_contig1030:6249..6435 | Fucus serratus male | CDS | F-serratus_M_contig1030 6250..6435 + |
1690962595.536065-CDS-F-serratus_M_contig1030:6249..6435 | 1690962595.536065-CDS-F-serratus_M_contig1030:6249..6435 | Fucus serratus male | CDS | F-serratus_M_contig1030 6250..6435 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1030.348.1 >prot_F-serratus_M_contig1030.348.1 ID=prot_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=polypeptide|length=199bp
MAHPAGRLLSSCAVASRLTLTLFLAMLAMLADLTLARGIVPGPTVQEGLF VKNNWIFKRDFFFKRDQPRNGQDVVDMRANRLAKFGKSGEVGYWKVERRA PPGAKRNLKLALQNGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAI MFADEGKIFVARAKEELTGTAAAARKNIGTFKVDLATLPPIVDRTFTL* back to topmRNA from alignment at F-serratus_M_contig1030:4065..6906+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1030.348.1 ID=mRNA_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=mRNA|length=2842bp|location=Sequence derived from alignment at F-serratus_M_contig1030:4065..6906+ (Fucus serratus male) CATAAAGACACCCGAGGTATCGTGATCACTGGACCTGCGAGGAGCACGTT
TCTCCTTCCACAAATATTCAAGAACGTATTGGTAGATTTCCTCTTGATAA
TCGACCGCCTCTTTCACCATGGCGCATCCCGCAGGGCGGTTGCTGTCTTC
ATGTGCTGTAGCTTCTAGATTGACTTTGACGCTTTTCTTGGCGATGTTGG
CGATGTTGGCGGACTTGACGTTAGCGAGGGGCATCGTGCCAGGGCCGACG
GTTCAGGTATGCCTTGTATATTTATAATTGCACCACCTTTGCGGGACTTT
AGCTTGCGAATCAACGGACTGAGGGTATCGTAGTGCCTCTATAGATATTG
GTACTTGTAATGTACCAGTGCCGTACCATAAATGGCCGCACTGTCGGTAT
TGCCTTCGCAGCCGCCCGTTCGCAAGCCCCATGCGGCAAGCCGGGATGCG
TGTAGTCACCTGAAGGGCAAGCATAGTGTTAGCCAGTCAGCCCGGATCGA
GGGCAGCACGCAAGTTGGTGCTTGTTATATGTAAGGTGTTTGCATTTGCA
AGGCAGCGCTGGATTTGCAGGAGGTCAACTCCTGTGCTGGCGGGAGACAC
CGCAGAGAACGCACGTACCACCCCGTACACGCCACAATGCTAGGTACCAC
GCGCACCGGTAGTTTTTGCGCGGCCTGATCGTCCCTCTTATCTCGGCTAA
GACTACACTTACACCAAGGCATATTATTTGGCGTGTTTTAGGTGTTAAAA
GCTTGGAGCAGTACGGTTGATTTCCGTCAGCGTGCCCAGACCTTCGACCC
ATATCAAGAAGAAGTTGCTTGAAATGAAGCTGCGGACAGACAAGTTCTCT
CTTTAGATCACTACACTACGGAGCGGCTTCCGCGTTACGGAGAGGAACAT
GACCGAGTTCTATTTTACCGAGTGTAGCGCGTCTCTTGAGTGATCGCGAT
CAATGTGTCGCCTGCTTCTCTTCGCACCCACCCAAGCCCGGGAACTGTCT
CGTCTGCTCGCGTCTTCGTGTGTGCTCCAGGAAGGCCTGTTCGTCAAGAA
CAACTGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATCAGGTATATT
ATGCACCGTGCCTCCTCGTCGTTGTAAATATTACCCACTCCTTCGCGCTT
TTCCGAGAGCCAACCTTCCCCAACTAGATCAGAGGACCACCCGTGCAGAA
ACCCCGCTTGACCCAACTAGGCTACTCAGGCTCTTCAACTGTTAATAGAT
AGAGTCACTTGGCTTTCAGGATCCTCCCCTCCTTACATGCGCATCGGTTT
TTCACAGATTCGGCGTTATTTTCTAACAACTGAGAACTATAATTGGGTGA
CGAAAGCTCGGTCAAGTTTGAACCCATCAAATACCATCCCCGGTTTTGGT
GTTCGGAGTCCACACAGGGTAACATGTTCTGTTGACGCTCAGTGCTGTGC
CTCGCAACACGCACCACCACGGACCCGAAAAATGCCACAAAACCCTCGTC
GACTCCAACCGCCCGGGAACAGCTAGAAACGTTATCCGCGTCGTGGTGAT
ATCTTTGTCTCAAAAACCTGCAGTATCTCTAATCTGACATGCTTGCCTGT
GGTCCGAAGTCTGAATCACCCACTGTAGGAGAGAGAGCACTCGTCTTCCA
AGATTACGGTTCGCCAGATTGCGTACGACGGGCATCTATCTGCCCCAGTA
GATGTTGCAGCGCAAGCCTTTTTTTGACACGCATGCTTTCCCACCGTTCC
ACGTTGATTGCGCTCGGGGGCATCCCTGACACAGCCCCGCAACGGGCAGG
ACGTGGTGGACATGCGTGCAAACCGATTGGCCAAGTTCGGCAAATCGGGT
GAGGTTGGGTACTGGAAGGTGGAGCGACGCGCCCCTCCGGGCGCGAAGCG
CAACTTGAAGCTTGCCCTTCAGAACGGGTTTGACGTCCTGGTGCTGGATG
TACCGGAGCAAGGAGACCGGAAGGACCTCATCGTCTCTTACGAGGTTCGT
TCGTTCGTTACGTCCCGCTCGAGACGAACGGCTACCAGAAATACGTCGAA
AGAAGGATAGCATCCTCCCCTATGCCCTCCAATCCCCCCCTTTAACCCGA
CATCCACCGACGCACTTTGGATCCGTTTTTTTAGAAATCATGACGCCCCA
GTCACCGTGATGCCGCGCGCGCGCGATGTTTGCAGATCCCCGTCACGAGA
GGGCGGTATCATCCGTCGGCGATCATGTTTGCCGACGAGGGCAAAATCTT
CGTGGCTAGGGCAAAGGAAGAGCTTACGGGAACCGCGGCCGCTGCTCGCA
AAAATATTGGTACTTTCAAGGTGGACTTGGCAACGCTTCCTCCAATCGTC
GATCGGACCTTCACGTTGTAGAAACGAAGATAGTAACGATGGAAGGGAGG
AGGAAGCATGAGTGTTTCAAGACACGCCACAGGAGACAATATCGATACCG
CGAGAGGGACGCGATCCGGCAGTACGGTGTGCACCTGGCGCGGCGCGGCG
CGGCGTGGCGCCTCTGGTGATTTTGTCGTGTTTAACTCATGAAGAAAGCT
GCGTGATCTTATTATTCCTTCTCTGCCTGTTAGCGGAACGTGTTTGACGA
AAAGTTCTGTTTGTTTTGATGTTTTGGGCGGCGAACGACGAAGCTGGCCG
ATTGGTCGGTAAAGCCCGCAGAGTTCAATGATATGAGTATAAGCCTGAAG
AAGTTTGACAGCTCGTTCAGAAAGATGTTCGCAAAACGCCCGATTTTAGT
AGCTCAAAAGAAACGAAAGCTTGCATGAACTGCTAAATTGTGTGGTAAAA
GACTTGCTCGTGGGAGAAACAACCGATCGCCCGAGAACTGAC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1030:4065..6906+ >mRNA_F-serratus_M_contig1030.348.1 ID=mRNA_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig1030:4065..6906+ (Fucus serratus male) ATGGCGCATCCCGCAGGGCGGTTGCTGTCTTCATGTGCTGTAGCTTCTAG ATTGACTTTGACGCTTTTCTTGGCGATGTTGGCGATGTTGGCGGACTTGA CGTTAGCGAGGGGCATCGTGCCAGGGCCGACGGTTCAGATGGCGCATCCC GCAGGGCGGTTGCTGTCTTCATGTGCTGTAGCTTCTAGATTGACTTTGAC GCTTTTCTTGGCGATGTTGGCGATGTTGGCGGACTTGACGTTAGCGAGGG GCATCGTGCCAGGGCCGACGGTTCAGGAAGGCCTGTTCGTCAAGAACAAC TGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATCAGGAAGGCCTGTT CGTCAAGAACAACTGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATC AGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTGCAAACCGATTGGCC AAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGGAGCGACGCGC CCCTCCGGGCGCGAAGCGCAACTTGAAGCTTGCCCTTCAGAACGGGTTTG ACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGGAAGGACCTCATC GTCTCTTACGAGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTGCAAA CCGATTGGCCAAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGG AGCGACGCGCCCCTCCGGGCGCGAAGCGCAACTTGAAGCTTGCCCTTCAG AACGGGTTTGACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGGAA GGACCTCATCGTCTCTTACGAGATCCCCGTCACGAGAGGGCGGTATCATC CGTCGGCGATCATGTTTGCCGACGAGGGCAAAATCTTCGTGGCTAGGGCA AAGGAAGAGCTTACGGGAACCGCGGCCGCTGCTCGCAAAAATATTGGTAC TTTCAAGGTGGACTTGGCAACGCTTCCTCCAATCGTCGATCGGACCTTCA CGTTGTAGATCCCCGTCACGAGAGGGCGGTATCATCCGTCGGCGATCATG TTTGCCGACGAGGGCAAAATCTTCGTGGCTAGGGCAAAGGAAGAGCTTAC GGGAACCGCGGCCGCTGCTCGCAAAAATATTGGTACTTTCAAGGTGGACT TGGCAACGCTTCCTCCAATCGTCGATCGGACCTTCACGTTGTAG back to top
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