mRNA_F-serratus_M_contig1030.348.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1030.348.1
Unique NamemRNA_F-serratus_M_contig1030.348.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1030.348.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 8.130e-61
Identity = 97/156 (62.18%), Postives = 116/156 (74.36%), Query Frame = 2 
Query:  245 PTVQEGLFVKNNWIFKRDFFFKRDQPRNGQDVVDMRANRLAKFGKSGEVGYWKVERRAPPGAKRNLKLALQNGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAIMFADEGKIFVARAKEELTGTAAAARKNIGTFKVDLATLPPIVDRTFTL 712
            P VQ+G F K +W   RDFFFKRDQ +NG D +  R N+LA+F  SGEVGYWK+ RR  PGA +        G D LVLD+PEQG R++LIVSYEIP++ GRYHPS+IMFA +G I+VA AKE+L G AAAARK IG+F VDL TL P+VDRTFTL
Sbjct:   15 PLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFTL 170
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1030.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI8.130e-6162.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1030contigF-serratus_M_contig1030:4065..6906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons4
Model size1186
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1030.348.1prot_F-serratus_M_contig1030.348.1Fucus serratus malepolypeptideF-serratus_M_contig1030 4183..6435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.3611615-UTR-F-serratus_M_contig1030:4064..41821622928839.3611615-UTR-F-serratus_M_contig1030:4064..4182Fucus serratus maleUTRF-serratus_M_contig1030 4065..4182 +
1690962595.4957411-UTR-F-serratus_M_contig1030:4064..41821690962595.4957411-UTR-F-serratus_M_contig1030:4064..4182Fucus serratus maleUTRF-serratus_M_contig1030 4065..4182 +
1622928839.4393623-UTR-F-serratus_M_contig1030:6435..69061622928839.4393623-UTR-F-serratus_M_contig1030:6435..6906Fucus serratus maleUTRF-serratus_M_contig1030 6436..6906 +
1690962595.546315-UTR-F-serratus_M_contig1030:6435..69061690962595.546315-UTR-F-serratus_M_contig1030:6435..6906Fucus serratus maleUTRF-serratus_M_contig1030 6436..6906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.3800752-CDS-F-serratus_M_contig1030:4182..43201622928839.3800752-CDS-F-serratus_M_contig1030:4182..4320Fucus serratus maleCDSF-serratus_M_contig1030 4183..4320 +
1690962595.5043886-CDS-F-serratus_M_contig1030:4182..43201690962595.5043886-CDS-F-serratus_M_contig1030:4182..4320Fucus serratus maleCDSF-serratus_M_contig1030 4183..4320 +
1622928839.3974166-CDS-F-serratus_M_contig1030:5094..51571622928839.3974166-CDS-F-serratus_M_contig1030:5094..5157Fucus serratus maleCDSF-serratus_M_contig1030 5095..5157 +
1690962595.5158207-CDS-F-serratus_M_contig1030:5094..51571690962595.5158207-CDS-F-serratus_M_contig1030:5094..5157Fucus serratus maleCDSF-serratus_M_contig1030 5095..5157 +
1622928839.4123921-CDS-F-serratus_M_contig1030:5848..60581622928839.4123921-CDS-F-serratus_M_contig1030:5848..6058Fucus serratus maleCDSF-serratus_M_contig1030 5849..6058 +
1690962595.527383-CDS-F-serratus_M_contig1030:5848..60581690962595.527383-CDS-F-serratus_M_contig1030:5848..6058Fucus serratus maleCDSF-serratus_M_contig1030 5849..6058 +
1622928839.4246247-CDS-F-serratus_M_contig1030:6249..64351622928839.4246247-CDS-F-serratus_M_contig1030:6249..6435Fucus serratus maleCDSF-serratus_M_contig1030 6250..6435 +
1690962595.536065-CDS-F-serratus_M_contig1030:6249..64351690962595.536065-CDS-F-serratus_M_contig1030:6249..6435Fucus serratus maleCDSF-serratus_M_contig1030 6250..6435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1030.348.1

>prot_F-serratus_M_contig1030.348.1 ID=prot_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=polypeptide|length=199bp
MAHPAGRLLSSCAVASRLTLTLFLAMLAMLADLTLARGIVPGPTVQEGLF
VKNNWIFKRDFFFKRDQPRNGQDVVDMRANRLAKFGKSGEVGYWKVERRA
PPGAKRNLKLALQNGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAI
MFADEGKIFVARAKEELTGTAAAARKNIGTFKVDLATLPPIVDRTFTL*
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mRNA from alignment at F-serratus_M_contig1030:4065..6906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1030.348.1 ID=mRNA_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=mRNA|length=2842bp|location=Sequence derived from alignment at F-serratus_M_contig1030:4065..6906+ (Fucus serratus male)
CATAAAGACACCCGAGGTATCGTGATCACTGGACCTGCGAGGAGCACGTT
TCTCCTTCCACAAATATTCAAGAACGTATTGGTAGATTTCCTCTTGATAA
TCGACCGCCTCTTTCACCATGGCGCATCCCGCAGGGCGGTTGCTGTCTTC
ATGTGCTGTAGCTTCTAGATTGACTTTGACGCTTTTCTTGGCGATGTTGG
CGATGTTGGCGGACTTGACGTTAGCGAGGGGCATCGTGCCAGGGCCGACG
GTTCAGGTATGCCTTGTATATTTATAATTGCACCACCTTTGCGGGACTTT
AGCTTGCGAATCAACGGACTGAGGGTATCGTAGTGCCTCTATAGATATTG
GTACTTGTAATGTACCAGTGCCGTACCATAAATGGCCGCACTGTCGGTAT
TGCCTTCGCAGCCGCCCGTTCGCAAGCCCCATGCGGCAAGCCGGGATGCG
TGTAGTCACCTGAAGGGCAAGCATAGTGTTAGCCAGTCAGCCCGGATCGA
GGGCAGCACGCAAGTTGGTGCTTGTTATATGTAAGGTGTTTGCATTTGCA
AGGCAGCGCTGGATTTGCAGGAGGTCAACTCCTGTGCTGGCGGGAGACAC
CGCAGAGAACGCACGTACCACCCCGTACACGCCACAATGCTAGGTACCAC
GCGCACCGGTAGTTTTTGCGCGGCCTGATCGTCCCTCTTATCTCGGCTAA
GACTACACTTACACCAAGGCATATTATTTGGCGTGTTTTAGGTGTTAAAA
GCTTGGAGCAGTACGGTTGATTTCCGTCAGCGTGCCCAGACCTTCGACCC
ATATCAAGAAGAAGTTGCTTGAAATGAAGCTGCGGACAGACAAGTTCTCT
CTTTAGATCACTACACTACGGAGCGGCTTCCGCGTTACGGAGAGGAACAT
GACCGAGTTCTATTTTACCGAGTGTAGCGCGTCTCTTGAGTGATCGCGAT
CAATGTGTCGCCTGCTTCTCTTCGCACCCACCCAAGCCCGGGAACTGTCT
CGTCTGCTCGCGTCTTCGTGTGTGCTCCAGGAAGGCCTGTTCGTCAAGAA
CAACTGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATCAGGTATATT
ATGCACCGTGCCTCCTCGTCGTTGTAAATATTACCCACTCCTTCGCGCTT
TTCCGAGAGCCAACCTTCCCCAACTAGATCAGAGGACCACCCGTGCAGAA
ACCCCGCTTGACCCAACTAGGCTACTCAGGCTCTTCAACTGTTAATAGAT
AGAGTCACTTGGCTTTCAGGATCCTCCCCTCCTTACATGCGCATCGGTTT
TTCACAGATTCGGCGTTATTTTCTAACAACTGAGAACTATAATTGGGTGA
CGAAAGCTCGGTCAAGTTTGAACCCATCAAATACCATCCCCGGTTTTGGT
GTTCGGAGTCCACACAGGGTAACATGTTCTGTTGACGCTCAGTGCTGTGC
CTCGCAACACGCACCACCACGGACCCGAAAAATGCCACAAAACCCTCGTC
GACTCCAACCGCCCGGGAACAGCTAGAAACGTTATCCGCGTCGTGGTGAT
ATCTTTGTCTCAAAAACCTGCAGTATCTCTAATCTGACATGCTTGCCTGT
GGTCCGAAGTCTGAATCACCCACTGTAGGAGAGAGAGCACTCGTCTTCCA
AGATTACGGTTCGCCAGATTGCGTACGACGGGCATCTATCTGCCCCAGTA
GATGTTGCAGCGCAAGCCTTTTTTTGACACGCATGCTTTCCCACCGTTCC
ACGTTGATTGCGCTCGGGGGCATCCCTGACACAGCCCCGCAACGGGCAGG
ACGTGGTGGACATGCGTGCAAACCGATTGGCCAAGTTCGGCAAATCGGGT
GAGGTTGGGTACTGGAAGGTGGAGCGACGCGCCCCTCCGGGCGCGAAGCG
CAACTTGAAGCTTGCCCTTCAGAACGGGTTTGACGTCCTGGTGCTGGATG
TACCGGAGCAAGGAGACCGGAAGGACCTCATCGTCTCTTACGAGGTTCGT
TCGTTCGTTACGTCCCGCTCGAGACGAACGGCTACCAGAAATACGTCGAA
AGAAGGATAGCATCCTCCCCTATGCCCTCCAATCCCCCCCTTTAACCCGA
CATCCACCGACGCACTTTGGATCCGTTTTTTTAGAAATCATGACGCCCCA
GTCACCGTGATGCCGCGCGCGCGCGATGTTTGCAGATCCCCGTCACGAGA
GGGCGGTATCATCCGTCGGCGATCATGTTTGCCGACGAGGGCAAAATCTT
CGTGGCTAGGGCAAAGGAAGAGCTTACGGGAACCGCGGCCGCTGCTCGCA
AAAATATTGGTACTTTCAAGGTGGACTTGGCAACGCTTCCTCCAATCGTC
GATCGGACCTTCACGTTGTAGAAACGAAGATAGTAACGATGGAAGGGAGG
AGGAAGCATGAGTGTTTCAAGACACGCCACAGGAGACAATATCGATACCG
CGAGAGGGACGCGATCCGGCAGTACGGTGTGCACCTGGCGCGGCGCGGCG
CGGCGTGGCGCCTCTGGTGATTTTGTCGTGTTTAACTCATGAAGAAAGCT
GCGTGATCTTATTATTCCTTCTCTGCCTGTTAGCGGAACGTGTTTGACGA
AAAGTTCTGTTTGTTTTGATGTTTTGGGCGGCGAACGACGAAGCTGGCCG
ATTGGTCGGTAAAGCCCGCAGAGTTCAATGATATGAGTATAAGCCTGAAG
AAGTTTGACAGCTCGTTCAGAAAGATGTTCGCAAAACGCCCGATTTTAGT
AGCTCAAAAGAAACGAAAGCTTGCATGAACTGCTAAATTGTGTGGTAAAA
GACTTGCTCGTGGGAGAAACAACCGATCGCCCGAGAACTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1030:4065..6906+

>mRNA_F-serratus_M_contig1030.348.1 ID=mRNA_F-serratus_M_contig1030.348.1|Name=mRNA_F-serratus_M_contig1030.348.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig1030:4065..6906+ (Fucus serratus male)
ATGGCGCATCCCGCAGGGCGGTTGCTGTCTTCATGTGCTGTAGCTTCTAG
ATTGACTTTGACGCTTTTCTTGGCGATGTTGGCGATGTTGGCGGACTTGA
CGTTAGCGAGGGGCATCGTGCCAGGGCCGACGGTTCAGATGGCGCATCCC
GCAGGGCGGTTGCTGTCTTCATGTGCTGTAGCTTCTAGATTGACTTTGAC
GCTTTTCTTGGCGATGTTGGCGATGTTGGCGGACTTGACGTTAGCGAGGG
GCATCGTGCCAGGGCCGACGGTTCAGGAAGGCCTGTTCGTCAAGAACAAC
TGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATCAGGAAGGCCTGTT
CGTCAAGAACAACTGGATTTTCAAGCGGGACTTCTTCTTCAAGCGGGATC
AGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTGCAAACCGATTGGCC
AAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGGAGCGACGCGC
CCCTCCGGGCGCGAAGCGCAACTTGAAGCTTGCCCTTCAGAACGGGTTTG
ACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGGAAGGACCTCATC
GTCTCTTACGAGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTGCAAA
CCGATTGGCCAAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGG
AGCGACGCGCCCCTCCGGGCGCGAAGCGCAACTTGAAGCTTGCCCTTCAG
AACGGGTTTGACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGGAA
GGACCTCATCGTCTCTTACGAGATCCCCGTCACGAGAGGGCGGTATCATC
CGTCGGCGATCATGTTTGCCGACGAGGGCAAAATCTTCGTGGCTAGGGCA
AAGGAAGAGCTTACGGGAACCGCGGCCGCTGCTCGCAAAAATATTGGTAC
TTTCAAGGTGGACTTGGCAACGCTTCCTCCAATCGTCGATCGGACCTTCA
CGTTGTAGATCCCCGTCACGAGAGGGCGGTATCATCCGTCGGCGATCATG
TTTGCCGACGAGGGCAAAATCTTCGTGGCTAGGGCAAAGGAAGAGCTTAC
GGGAACCGCGGCCGCTGCTCGCAAAAATATTGGTACTTTCAAGGTGGACT
TGGCAACGCTTCCTCCAATCGTCGATCGGACCTTCACGTTGTAG
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