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Homology
BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.990e-23 Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 100 MFPSVGGQILGSCRFYGATLLATSRSTPKEAMNRALLNYRWPFSACWARGHKTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKILWMLG 429
MF + G+ CR +G ++ R +L RGHKTVSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct: 1 MFSLLVGRAFEPCRLHGGNVM------------RVVLGA--------VRGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.820e-19 Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1
Query: 259 VSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKILWMLG 429
VSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct: 17 VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLG 73
BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: A0A4V1QUL6_9FIRM (50S ribosomal protein L35 n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4V1QUL6_9FIRM) HSP 1 Score: 51.6 bits (122), Expect = 3.080e-5 Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1
Query: 253 KTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKI 414
KT S KKR +TGSG +KR Q+G+ H TG KPR R R L QT + T + +
Sbjct: 5 KTHSGSKKRFDVTGSGKVKRAQSGKNHKTGDKPRKRKRNLRQTAFVNETMESNV 58
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 1087 |
Cds size | 339 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928822.4837134-UTR-F-serratus_M_contig102:805935..806034 | 1622928822.4837134-UTR-F-serratus_M_contig102:805935..806034 | Fucus serratus male | UTR | F-serratus_M_contig102 805936..806034 + |
1690962588.4621272-UTR-F-serratus_M_contig102:805935..806034 | 1690962588.4621272-UTR-F-serratus_M_contig102:805935..806034 | Fucus serratus male | UTR | F-serratus_M_contig102 805936..806034 + |
1622928822.5314262-UTR-F-serratus_M_contig102:809181..809830 | 1622928822.5314262-UTR-F-serratus_M_contig102:809181..809830 | Fucus serratus male | UTR | F-serratus_M_contig102 809182..809830 + |
1690962588.5005333-UTR-F-serratus_M_contig102:809181..809830 | 1690962588.5005333-UTR-F-serratus_M_contig102:809181..809830 | Fucus serratus male | UTR | F-serratus_M_contig102 809182..809830 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928822.499384-CDS-F-serratus_M_contig102:806034..806193 | 1622928822.499384-CDS-F-serratus_M_contig102:806034..806193 | Fucus serratus male | CDS | F-serratus_M_contig102 806035..806193 + |
1690962588.4744017-CDS-F-serratus_M_contig102:806034..806193 | 1690962588.4744017-CDS-F-serratus_M_contig102:806034..806193 | Fucus serratus male | CDS | F-serratus_M_contig102 806035..806193 + |
1622928822.5165226-CDS-F-serratus_M_contig102:809001..809181 | 1622928822.5165226-CDS-F-serratus_M_contig102:809001..809181 | Fucus serratus male | CDS | F-serratus_M_contig102 809002..809181 + |
1690962588.4868886-CDS-F-serratus_M_contig102:809001..809181 | 1690962588.4868886-CDS-F-serratus_M_contig102:809001..809181 | Fucus serratus male | CDS | F-serratus_M_contig102 809002..809181 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.273.1 >prot_F-serratus_M_contig102.273.1 ID=prot_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MFPSVGGQILGSCRFYGATLLATSRSTPKEAMNRALLNYRWPFSACWARG HKTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGT QKKKILWMLGCG* back to topmRNA from alignment at F-serratus_M_contig102:805936..809830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig102.273.1 ID=mRNA_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=mRNA|length=3895bp|location=Sequence derived from alignment at F-serratus_M_contig102:805936..809830+ (Fucus serratus male) AGGCAATTTTCGATGTCAGCTGACTAATAGGGGGGCCCCTTCTCACATGG
TCAGTCTACTACAAACTGGTTATTGATTTTGCTTCCTTATTGACCAGCCA
TGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCGATTCTATGGT
GCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGGCTATGAACCG
GGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGGGCAAGAGGCC
ACAAGACTGTAAGATGACTGAAATATCATGCAAACAGCTCTTGCCAATGT
TGCGCACTGCCCAACGCGACTTCGTATTACAGTACTGTGGAACCCAACAA
CCGCTAATCCTATTAATCATATGCGGGTTTTTGTTCTGACAGCCAACATA
CCCACTCAAACAATTCGACGTAAATTCCCTTGGACGCTGTACCTAGGCCT
AGTTGTACCAGATTCAGCCGTAGTGTGGAGAATGAGGAGGCTGGCACAGG
ACGGGACGACTGAACACGTCTCGCGATACCAAATTCTCGGGCCCGTACGG
GTATAGGAGAATATTGATTTTCCCTGTTCGGCTGACAACGAACAAGATTG
CAACCTTACCCGGTTGATCCAGACTGCTAAATGTGACGATCATACGTGAT
ACATACAAATATATCTATGCCGGTACTTTCAACATGCCCACTTCATACCA
ATCGTGCGTGTGGGAAAGAGAAGCGAATATATGTGCAGTCATCACATATA
GCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGC
TTAACAGGGGAAATAATATTCCCCTGTCCCCGTGCGGGCCTGAGAATTTG
GTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGCCAGCCTGCTCATCT
CCATACTCAGGCTGAATCTGGTGCTTACTTTCGGGATTCCTCCCGAGTTC
CGCGGCGGCGTCCATTTATGGAACTGCCATACGCCATCGGGTCAGTCCCG
AGTTTATCGGGTAACGCAATTGCGTACCGATGGTGTTCACTGCCGAGAGT
TCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGC
CTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTATTTTCCACCCA
CTATTGGTATGAAGTGATCATGTTGAAAGTACCGGCGAGGGTGACCTGCT
ACAGGTAAGGCAGCACTCGTTCGGAACTACCTTGAAGTTACTGGCCCTGT
GCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCT
GTTAAACTCGAGACTGACCTAATGCGTATAGCGGTTTCATAAATGGACGC
CGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTG
AGTATGAAGATGATCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTC
GCGAAACCAAATTCTCAGGCACGTACGGGGACAGGGGAATACTAATTTTC
CTCATTTTCCCTATTCAGTTGACCACGAGCAGGGTTGGCAACCTTACCGG
GTTGATCCATACTCTTCTTTATGTGATGGCCATACATACATACATACATA
CCGGTAGTTTTCTCCTCGACAAAAATTAATCGCCACAAGAGTATATGCTT
GATTTATGTATTTATGTAGACCAGAGTATGGATCAACCGGGTAAGGTTGC
CAATCCTGCTCGTGGTCAGCTGAAAAGGGAAAATTAATATTTCCCTGTCC
ACGTTCGCCCCTGAGAAATTGATCTCGCGAGACGGGTTCGGCAGTCCCGT
CCCGCGTCAGTGTGCTCATCTCCATACTCAAGCTGAATCTGGTGCTTACT
TGCGGGTTTCCGCCCGAGTTCCTCGGCGGCGTCCATTTATTTATTTAAAA
CCGCCATACGCCATCGGGTACGTCCCGATTTTATACGATTTTATCGGGTC
ACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAAG
GCCAGTAAACCTCAAGTAGTTCGAACGAGTGCTGCCTTGGCAGGTCAACA
TTGACCAATTGATATGCGCCTCTCTTTCCCACACCCACTATTGGTATGAA
GTGGGCATGTTGAAAGTACCGGCGAAATGTAGGTCTGATCTCTAATCAAC
CTACTTTTCCAAGGGGCTTTTAACTTGTCAATACAGTTGCACATCCCTCC
CGCTGTCTTGCAGGGATACCAGATACATTATATAGAGCAGCATCCACACT
TACTACAGCGGTAGCTATGTTTACACCCCATCCCAACTTGGACATATGGT
CGCACTCTTTCTACCCTATAGTACGTACACAAGTACTCGATCCAAGCGGT
TCGTTTTGATTCGTATCTGGTATTTTATTTTTGCCACCCAGTGTTTCTCG
TACGAACATTATGATGGCCTGTAACAGAACTCGGCTCCAATAGCGATCGG
ACTCGTGCGCGCTGGAGATGGCCTTTGTGTCGCTCTCGGACCACTGCGGT
GGTTCATGCCCAACTCTGCCAGTACATTGAGTTTACTACAGCATTAGTCG
TGGATATTACAGCTGTGCACAGCACGCGGTTTAGTACGAATTTCTCAGGA
CACACTGGTGTACGTGAAATAACTGAGGTTTTGTCTTGGCACCCTACATT
CCCAACTAAACCCTTTTGACAATTTTTCCCTGTCTGGGGGATGCTCAGAA
GGTTAAGATGCGTAGCCGTTCATGAGAAGTAACGCGGAACGTACACGACT
TGTCTTCTAGATCGAGAAATAAGCATTCATCCGTTGTCCAGAGCACTCGT
TTTAGCAGCACCAAGCCGACAGGCAACAGCAAATCCAAGTTTTTCTACAG
CAGTAATAATAGATTTCACATCCAAGAAGTGTATGTAGATCTGACGTCGC
CCGATCGCCCGTCAAATACTTGGTGCGGTACAGTATACCTTGATTCCCAC
CTTGATTGCCCATTGACGCAACGCGGCCTTTCTACGAACGCATGCAAATC
ATGACATGGTATTTGGCGCTTTCTACGAACGCATGCAAAACATTAAATGT
TATTTGGCGTAAACAGGTCTCATCTGTGAAGAAGCGCGTGAGATTGACCG
GCTCTGGGAACCTCAAACGAGGGCAGACGGGGAGGAGACATAACACGGGC
CCGAAACCTCGTTCCCGGATGCGACAGTTGATGCAAACGCGTCTCATTGA
AGGAACGCAGAAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGATCGT
GGAAGCTGTTGTAGGGCGATTCCATCACACGGTAAAAGTAAGCTTCTTAT
TTCTTTCCGTCGTCACGGGGCTTCCTTTTCTTTTCAGAAAAATGTCCCAA
CGACTTATTTCTGAAGCACACAGAACACTTAACAACCCTTGGTTGTGATG
GCGAGGAAAGCAGCTAAGGTTTGTAGAGTTTCTTGCTTCGAAGTTATAAT
ACAAATCGCTTCAGTGACAGTTTCGGATGCAACCGATCACTCACGCGCAA
GTCATATGCGCTTGACACATCTCCCATCATCACTACATCAAGAGCTGGAA
CACCGCTCAGAAGAGAGACATGAGAGGAGCTTGAAGTATACGAGGCATGT
GTCGTCCCTGTTGGCGAAAAAATTGTTGTGGGAAGCTAGATTTTTCTGTT
ACGCGTTGCATCGCTTGGCCGCCGTGGTACCATGACTGTTGCCGGAATCA
CAAGAACAAGTCCATCTCATCATAAACGGTTTGTATATCAAAGCAAGCTT
ATGATCACGGAGTGCCTTGCTCCAGGTTGCTGCCACCAGTTACCGCGTGA
AAAAATAAACTATACTCAAGCTCGCGCTATTTTACGAATCTTCGAGGCAC
CTCAAAAAACTACATGTCAAATAAGAATCGGCCTAAAGACACCCC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig102:805936..809830+ >mRNA_F-serratus_M_contig102.273.1 ID=mRNA_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig102:805936..809830+ (Fucus serratus male) ATGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCGATTCTATGG TGCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGGCTATGAACC GGGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGGGCAAGAGGC CACAAGACTATGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCG ATTCTATGGTGCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGG CTATGAACCGGGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGG GCAAGAGGCCACAAGACTGTCTCATCTGTGAAGAAGCGCGTGAGATTGAC CGGCTCTGGGAACCTCAAACGAGGGCAGACGGGGAGGAGACATAACACGG GCCCGAAACCTCGTTCCCGGATGCGACAGTTGATGCAAACGCGTCTCATT GAAGGAACGCAGAAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGAGT CTCATCTGTGAAGAAGCGCGTGAGATTGACCGGCTCTGGGAACCTCAAAC GAGGGCAGACGGGGAGGAGACATAACACGGGCCCGAAACCTCGTTCCCGG ATGCGACAGTTGATGCAAACGCGTCTCATTGAAGGAACGCAGAAGAAAAA GATTCTTTGGATGCTTGGGTGCGGTTGA back to top
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