mRNA_F-serratus_M_contig102.273.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.273.1
Unique NamemRNA_F-serratus_M_contig102.273.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.990e-23
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  100 MFPSVGGQILGSCRFYGATLLATSRSTPKEAMNRALLNYRWPFSACWARGHKTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKILWMLG 429
            MF  + G+    CR +G  ++            R +L           RGHKTVSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct:    1 MFSLLVGRAFEPCRLHGGNVM------------RVVLGA--------VRGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
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BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-19
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  259 VSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKILWMLG 429
            VSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct:   17 VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLG 73
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BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Match: A0A4V1QUL6_9FIRM (50S ribosomal protein L35 n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4V1QUL6_9FIRM)

HSP 1 Score: 51.6 bits (122), Expect = 3.080e-5
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  253 KTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGTQKKKI 414
            KT S  KKR  +TGSG +KR Q+G+ H TG KPR R R L QT  +  T +  +
Sbjct:    5 KTHSGSKKRFDVTGSGKVKRAQSGKNHKTGDKPRKRKRNLRQTAFVNETMESNV 58
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JU63_9PHAE1.990e-2353.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQT0_ECTSI1.820e-1980.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4V1QUL6_9FIRM3.080e-548.1550S ribosomal protein L35 n=2 Tax=Firmicutes TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:805936..809830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1087
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.273.1prot_F-serratus_M_contig102.273.1Fucus serratus malepolypeptideF-serratus_M_contig102 806035..809181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.4837134-UTR-F-serratus_M_contig102:805935..8060341622928822.4837134-UTR-F-serratus_M_contig102:805935..806034Fucus serratus maleUTRF-serratus_M_contig102 805936..806034 +
1690962588.4621272-UTR-F-serratus_M_contig102:805935..8060341690962588.4621272-UTR-F-serratus_M_contig102:805935..806034Fucus serratus maleUTRF-serratus_M_contig102 805936..806034 +
1622928822.5314262-UTR-F-serratus_M_contig102:809181..8098301622928822.5314262-UTR-F-serratus_M_contig102:809181..809830Fucus serratus maleUTRF-serratus_M_contig102 809182..809830 +
1690962588.5005333-UTR-F-serratus_M_contig102:809181..8098301690962588.5005333-UTR-F-serratus_M_contig102:809181..809830Fucus serratus maleUTRF-serratus_M_contig102 809182..809830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.499384-CDS-F-serratus_M_contig102:806034..8061931622928822.499384-CDS-F-serratus_M_contig102:806034..806193Fucus serratus maleCDSF-serratus_M_contig102 806035..806193 +
1690962588.4744017-CDS-F-serratus_M_contig102:806034..8061931690962588.4744017-CDS-F-serratus_M_contig102:806034..806193Fucus serratus maleCDSF-serratus_M_contig102 806035..806193 +
1622928822.5165226-CDS-F-serratus_M_contig102:809001..8091811622928822.5165226-CDS-F-serratus_M_contig102:809001..809181Fucus serratus maleCDSF-serratus_M_contig102 809002..809181 +
1690962588.4868886-CDS-F-serratus_M_contig102:809001..8091811690962588.4868886-CDS-F-serratus_M_contig102:809001..809181Fucus serratus maleCDSF-serratus_M_contig102 809002..809181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.273.1

>prot_F-serratus_M_contig102.273.1 ID=prot_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MFPSVGGQILGSCRFYGATLLATSRSTPKEAMNRALLNYRWPFSACWARG
HKTVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRQLMQTRLIEGT
QKKKILWMLGCG*
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mRNA from alignment at F-serratus_M_contig102:805936..809830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.273.1 ID=mRNA_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=mRNA|length=3895bp|location=Sequence derived from alignment at F-serratus_M_contig102:805936..809830+ (Fucus serratus male)
AGGCAATTTTCGATGTCAGCTGACTAATAGGGGGGCCCCTTCTCACATGG
TCAGTCTACTACAAACTGGTTATTGATTTTGCTTCCTTATTGACCAGCCA
TGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCGATTCTATGGT
GCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGGCTATGAACCG
GGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGGGCAAGAGGCC
ACAAGACTGTAAGATGACTGAAATATCATGCAAACAGCTCTTGCCAATGT
TGCGCACTGCCCAACGCGACTTCGTATTACAGTACTGTGGAACCCAACAA
CCGCTAATCCTATTAATCATATGCGGGTTTTTGTTCTGACAGCCAACATA
CCCACTCAAACAATTCGACGTAAATTCCCTTGGACGCTGTACCTAGGCCT
AGTTGTACCAGATTCAGCCGTAGTGTGGAGAATGAGGAGGCTGGCACAGG
ACGGGACGACTGAACACGTCTCGCGATACCAAATTCTCGGGCCCGTACGG
GTATAGGAGAATATTGATTTTCCCTGTTCGGCTGACAACGAACAAGATTG
CAACCTTACCCGGTTGATCCAGACTGCTAAATGTGACGATCATACGTGAT
ACATACAAATATATCTATGCCGGTACTTTCAACATGCCCACTTCATACCA
ATCGTGCGTGTGGGAAAGAGAAGCGAATATATGTGCAGTCATCACATATA
GCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGC
TTAACAGGGGAAATAATATTCCCCTGTCCCCGTGCGGGCCTGAGAATTTG
GTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGCCAGCCTGCTCATCT
CCATACTCAGGCTGAATCTGGTGCTTACTTTCGGGATTCCTCCCGAGTTC
CGCGGCGGCGTCCATTTATGGAACTGCCATACGCCATCGGGTCAGTCCCG
AGTTTATCGGGTAACGCAATTGCGTACCGATGGTGTTCACTGCCGAGAGT
TCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGC
CTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTATTTTCCACCCA
CTATTGGTATGAAGTGATCATGTTGAAAGTACCGGCGAGGGTGACCTGCT
ACAGGTAAGGCAGCACTCGTTCGGAACTACCTTGAAGTTACTGGCCCTGT
GCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCT
GTTAAACTCGAGACTGACCTAATGCGTATAGCGGTTTCATAAATGGACGC
CGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTG
AGTATGAAGATGATCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTC
GCGAAACCAAATTCTCAGGCACGTACGGGGACAGGGGAATACTAATTTTC
CTCATTTTCCCTATTCAGTTGACCACGAGCAGGGTTGGCAACCTTACCGG
GTTGATCCATACTCTTCTTTATGTGATGGCCATACATACATACATACATA
CCGGTAGTTTTCTCCTCGACAAAAATTAATCGCCACAAGAGTATATGCTT
GATTTATGTATTTATGTAGACCAGAGTATGGATCAACCGGGTAAGGTTGC
CAATCCTGCTCGTGGTCAGCTGAAAAGGGAAAATTAATATTTCCCTGTCC
ACGTTCGCCCCTGAGAAATTGATCTCGCGAGACGGGTTCGGCAGTCCCGT
CCCGCGTCAGTGTGCTCATCTCCATACTCAAGCTGAATCTGGTGCTTACT
TGCGGGTTTCCGCCCGAGTTCCTCGGCGGCGTCCATTTATTTATTTAAAA
CCGCCATACGCCATCGGGTACGTCCCGATTTTATACGATTTTATCGGGTC
ACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAAG
GCCAGTAAACCTCAAGTAGTTCGAACGAGTGCTGCCTTGGCAGGTCAACA
TTGACCAATTGATATGCGCCTCTCTTTCCCACACCCACTATTGGTATGAA
GTGGGCATGTTGAAAGTACCGGCGAAATGTAGGTCTGATCTCTAATCAAC
CTACTTTTCCAAGGGGCTTTTAACTTGTCAATACAGTTGCACATCCCTCC
CGCTGTCTTGCAGGGATACCAGATACATTATATAGAGCAGCATCCACACT
TACTACAGCGGTAGCTATGTTTACACCCCATCCCAACTTGGACATATGGT
CGCACTCTTTCTACCCTATAGTACGTACACAAGTACTCGATCCAAGCGGT
TCGTTTTGATTCGTATCTGGTATTTTATTTTTGCCACCCAGTGTTTCTCG
TACGAACATTATGATGGCCTGTAACAGAACTCGGCTCCAATAGCGATCGG
ACTCGTGCGCGCTGGAGATGGCCTTTGTGTCGCTCTCGGACCACTGCGGT
GGTTCATGCCCAACTCTGCCAGTACATTGAGTTTACTACAGCATTAGTCG
TGGATATTACAGCTGTGCACAGCACGCGGTTTAGTACGAATTTCTCAGGA
CACACTGGTGTACGTGAAATAACTGAGGTTTTGTCTTGGCACCCTACATT
CCCAACTAAACCCTTTTGACAATTTTTCCCTGTCTGGGGGATGCTCAGAA
GGTTAAGATGCGTAGCCGTTCATGAGAAGTAACGCGGAACGTACACGACT
TGTCTTCTAGATCGAGAAATAAGCATTCATCCGTTGTCCAGAGCACTCGT
TTTAGCAGCACCAAGCCGACAGGCAACAGCAAATCCAAGTTTTTCTACAG
CAGTAATAATAGATTTCACATCCAAGAAGTGTATGTAGATCTGACGTCGC
CCGATCGCCCGTCAAATACTTGGTGCGGTACAGTATACCTTGATTCCCAC
CTTGATTGCCCATTGACGCAACGCGGCCTTTCTACGAACGCATGCAAATC
ATGACATGGTATTTGGCGCTTTCTACGAACGCATGCAAAACATTAAATGT
TATTTGGCGTAAACAGGTCTCATCTGTGAAGAAGCGCGTGAGATTGACCG
GCTCTGGGAACCTCAAACGAGGGCAGACGGGGAGGAGACATAACACGGGC
CCGAAACCTCGTTCCCGGATGCGACAGTTGATGCAAACGCGTCTCATTGA
AGGAACGCAGAAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGATCGT
GGAAGCTGTTGTAGGGCGATTCCATCACACGGTAAAAGTAAGCTTCTTAT
TTCTTTCCGTCGTCACGGGGCTTCCTTTTCTTTTCAGAAAAATGTCCCAA
CGACTTATTTCTGAAGCACACAGAACACTTAACAACCCTTGGTTGTGATG
GCGAGGAAAGCAGCTAAGGTTTGTAGAGTTTCTTGCTTCGAAGTTATAAT
ACAAATCGCTTCAGTGACAGTTTCGGATGCAACCGATCACTCACGCGCAA
GTCATATGCGCTTGACACATCTCCCATCATCACTACATCAAGAGCTGGAA
CACCGCTCAGAAGAGAGACATGAGAGGAGCTTGAAGTATACGAGGCATGT
GTCGTCCCTGTTGGCGAAAAAATTGTTGTGGGAAGCTAGATTTTTCTGTT
ACGCGTTGCATCGCTTGGCCGCCGTGGTACCATGACTGTTGCCGGAATCA
CAAGAACAAGTCCATCTCATCATAAACGGTTTGTATATCAAAGCAAGCTT
ATGATCACGGAGTGCCTTGCTCCAGGTTGCTGCCACCAGTTACCGCGTGA
AAAAATAAACTATACTCAAGCTCGCGCTATTTTACGAATCTTCGAGGCAC
CTCAAAAAACTACATGTCAAATAAGAATCGGCCTAAAGACACCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:805936..809830+

>mRNA_F-serratus_M_contig102.273.1 ID=mRNA_F-serratus_M_contig102.273.1|Name=mRNA_F-serratus_M_contig102.273.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig102:805936..809830+ (Fucus serratus male)
ATGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCGATTCTATGG
TGCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGGCTATGAACC
GGGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGGGCAAGAGGC
CACAAGACTATGTTCCCCTCCGTTGGTGGCCAGATTTTGGGCAGCTGTCG
ATTCTATGGTGCTACGCTGTTGGCAACCTCGAGATCAACACCTAAGGAGG
CTATGAACCGGGCACTGTTGAACTACCGCTGGCCCTTCTCCGCCTGCTGG
GCAAGAGGCCACAAGACTGTCTCATCTGTGAAGAAGCGCGTGAGATTGAC
CGGCTCTGGGAACCTCAAACGAGGGCAGACGGGGAGGAGACATAACACGG
GCCCGAAACCTCGTTCCCGGATGCGACAGTTGATGCAAACGCGTCTCATT
GAAGGAACGCAGAAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGAGT
CTCATCTGTGAAGAAGCGCGTGAGATTGACCGGCTCTGGGAACCTCAAAC
GAGGGCAGACGGGGAGGAGACATAACACGGGCCCGAAACCTCGTTCCCGG
ATGCGACAGTTGATGCAAACGCGTCTCATTGAAGGAACGCAGAAGAAAAA
GATTCTTTGGATGCTTGGGTGCGGTTGA
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