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Homology
BLAST of mRNA_F-serratus_M_contig1002.133.1 vs. uniprot
Match: D8LTA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA2_ECTSI) HSP 1 Score: 216 bits (550), Expect = 7.310e-63 Identity = 139/273 (50.92%), Postives = 174/273 (63.74%), Query Frame = 3
Query: 75 VMIARSFSRASLSAANHARARARMCTAALVEATSAFARTPP--------PPPQHPYPF---HLPTTARFVTGRRHMSSRRKNLNEKNQEKMIDVTPIGTKPWQIAAEAIAEAEAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATE----------SGRPGGQDEANE---NPPTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQRYNHKKREKLRYKTIRNIKYKEKAQRMAAYERKLQKRRDRKAREQALFATWRGTGDSDTASAA 821
+M+ARS SR + +A R C ++LV ++ + P P P + LP ++ + RRH+SS R + E +DVTPIG KP QI EAIAEAEA+E L DD++ SG PS+WEY+ +TE +GR G +DE +E NPPTPILDAYE+S+DP EMERLI +AFDSLPERAGPQRYNHK+RE RY+TIRNIKYKEKAQR AA+ERKLQKRRDRKAR+ ALFATWR TG ++ + A
Sbjct: 1 MMLARSISRVAAGSARRVHDGQRACISSLVGGCNSPSSMPAVDESAAARPKVSRPAAWGVASLPEPSKVGSCRRHLSSGRPPFDMGEDENEVDVTPIGNKPGQITREAIAEAEASEDLDDDDIF----------SGKPSDWEYDASTEEAGHDSEKAEAGREGFRDEGDEGDENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQRYNHKRREHQRYRTIRNIKYKEKAQRTAAHERKLQKRRDRKARDLALFATWRETGPAEETADA 263
BLAST of mRNA_F-serratus_M_contig1002.133.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE) HSP 1 Score: 100 bits (248), Expect = 6.130e-19 Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 3
Query: 351 IAAEAIAEAEAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATE----------SGRPGGQDEANE---NPPTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQ 632
I EAIAEAEA+E L DD++ SG PS+WEY+ +TE +GR G QDE +E NPPTPILDAYE+S+DP EMERLI +AFDSLPERAGPQ
Sbjct: 8 ITREAIAEAEASEDLDDDDIF----------SGKPSDWEYDASTEEVRHDSEEAEAGREGLQDEGHEGEENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQ 104
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | mitochondrion |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-12_005800.1 |
Exons | 3 |
Model size | 1640 |
Cds size | 762 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928793.5736814-UTR-F-serratus_M_contig1002:180471..180548 | 1622928793.5736814-UTR-F-serratus_M_contig1002:180471..180548 | Fucus serratus male | UTR | F-serratus_M_contig1002 180472..180548 + |
1690962574.6492534-UTR-F-serratus_M_contig1002:180471..180548 | 1690962574.6492534-UTR-F-serratus_M_contig1002:180471..180548 | Fucus serratus male | UTR | F-serratus_M_contig1002 180472..180548 + |
1622928793.6414378-UTR-F-serratus_M_contig1002:183281..184082 | 1622928793.6414378-UTR-F-serratus_M_contig1002:183281..184082 | Fucus serratus male | UTR | F-serratus_M_contig1002 183282..184082 + |
1690962574.6845932-UTR-F-serratus_M_contig1002:183281..184082 | 1690962574.6845932-UTR-F-serratus_M_contig1002:183281..184082 | Fucus serratus male | UTR | F-serratus_M_contig1002 183282..184082 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928793.5908399-CDS-F-serratus_M_contig1002:180548..180792 | 1622928793.5908399-CDS-F-serratus_M_contig1002:180548..180792 | Fucus serratus male | CDS | F-serratus_M_contig1002 180549..180792 + |
1690962574.6591208-CDS-F-serratus_M_contig1002:180548..180792 | 1690962574.6591208-CDS-F-serratus_M_contig1002:180548..180792 | Fucus serratus male | CDS | F-serratus_M_contig1002 180549..180792 + |
1622928793.6057646-CDS-F-serratus_M_contig1002:182485..182844 | 1622928793.6057646-CDS-F-serratus_M_contig1002:182485..182844 | Fucus serratus male | CDS | F-serratus_M_contig1002 182486..182844 + |
1690962574.6678395-CDS-F-serratus_M_contig1002:182485..182844 | 1690962574.6678395-CDS-F-serratus_M_contig1002:182485..182844 | Fucus serratus male | CDS | F-serratus_M_contig1002 182486..182844 + |
1622928793.6289663-CDS-F-serratus_M_contig1002:183122..183281 | 1622928793.6289663-CDS-F-serratus_M_contig1002:183122..183281 | Fucus serratus male | CDS | F-serratus_M_contig1002 183123..183281 + |
1690962574.6762633-CDS-F-serratus_M_contig1002:183122..183281 | 1690962574.6762633-CDS-F-serratus_M_contig1002:183122..183281 | Fucus serratus male | CDS | F-serratus_M_contig1002 183123..183281 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1002.133.1 >prot_F-serratus_M_contig1002.133.1 ID=prot_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=polypeptide|length=254bp
MIARSFSRASLSAANHARARARMCTAALVEATSAFARTPPPPPQHPYPFH LPTTARFVTGRRHMSSRRKNLNEKNQEKMIDVTPIGTKPWQIAAEAIAEA EAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATESGRPGGQDEANENP PTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQRYNHKKREKLRYKTI RNIKYKEKAQRMAAYERKLQKRRDRKAREQALFATWRGTGDSDTASAAAT IKD* back to topmRNA from alignment at F-serratus_M_contig1002:180472..184082+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1002.133.1 ID=mRNA_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=mRNA|length=3611bp|location=Sequence derived from alignment at F-serratus_M_contig1002:180472..184082+ (Fucus serratus male) CGTGATGTTTGCATAGCTCTTGTGGGCGCTTTGACACGTACCACCCAATC
CCGTCACACGAAGAGATCATAGCTGTCATGATTGCACGATCATTTAGCCG
TGCTTCATTGTCCGCAGCAAATCATGCGCGTGCTAGAGCACGGATGTGTA
CAGCTGCGTTAGTGGAGGCGACCTCAGCTTTCGCCCGCACACCTCCACCA
CCGCCACAACATCCGTACCCCTTCCATCTCCCTACTACGGCGCGATTTGT
CACCGGCCGCCGGCATATGTCGTCGCGCCGAAAGAACTTGAACGAAAAGA
ACCAGGAGAAAATGATTGACGGTGAGTTGCACTGCATGAGTGCGCGTGTT
AATCGGCCTAAAAGTTTTGGCGTGGACGGAGGTTAATAAGTACTTACACG
TGGTACCTCCGCTCGCACTAGTCTCGCCTCGGTCAAGATGCGCCATGTCT
TGTGCGAAGGACACAATTATTCATACAGTACTGTATCAGAGCTAGACCAA
TACAGTAGCTTTCCTCACCGTACAAACGTCTTTCGTGGTTTGCGCTTACC
CCGATCCCCCCTTGAGCACACCTACTCCATACGATATTGTAGAGAGCTTT
TTACAAGACAACTGCTTTCGTCATGTTCATGTTCATGTTACCGCAGCTGA
TGGAGTGAAGAAACCAAACCACATACTACTCGTACTCGTAAAGCAATTCG
CAACGCCGGGCAGGAAGGCCATTGAAAAAGCGGTTCCCAACTGACTCGTA
CTCGGGAGTATGCATTTCGATCCAACTTGAGCGTGATGGAGCATATCCAC
CCGTCCTCTCGGCAGCCTATTTTCCTCGGCGGTGTGAGAATGATTATTGT
TGCACGAGCTGTCTTCAGCAGCAACTCCAAATTGGGGGGGATTTGCGAAT
GCTACCGAGTATCGTACAAATTCTCAAGCGCGAACACGGGCAGGGATCGT
TCACTTTCCCTGTTCAGACCACGAGCAGGATTGGCAACGTTAGCTTTACC
CGGCTGATCCATTATCTGCTGTAGGCGGTGACCCTACATGGATACATAAT
CGTACATATCTGGAGCTGGAGTCAGTTTTAACCTGTTTAAACCTGGGTGT
GAAGAATGAGCGGACAGAGGCGGGACAGCACAGCCAAACCTGGCTTGCGA
GACCGAATTCTAAAGCTCGAACTCGCACAGAGAAATTCCAGTTATCCTGT
CCGTGAAGACCACTCCCACCCTTACCTTTACATTTACCTTTACCCCCGCA
TACGTACAGCAGCGTGGTTACGTTTTCCACTTGATTATCGGCAAAGTCCT
TTAGTCCTTTCTCTATATCGACGACCGCTCTACAAGAAGTAGAACTCCAT
GAGTAAAGCGACGACCGCATTTTGTTACTGTAGCAGGTTATTATTATGGA
AATAGTTCATCGCCACGCGTCGTATGAAGTGACGACGCCTTGACTTGTTA
TCTCGATGCGACCGTCTTCACGCGGGCTTACGGTGCGCGATAGCATGGAG
GCTTTACTACCTCCGTTTGAGTACAGTTGTAGAGTGGGTGGGGCGGCTGG
CTCCCCCATCGTAGATGTTCGTTGCAGTCACTGTTAATAGCGGCACCAAC
TGCCGTCTAGAGTTAGAGTGGCGCGTGTCTTCCACGGTACCGAAAATCGG
AGTCCCGTCTATACCACCACCAAGCAGTGTACCCGAGTGCTTTTTTTTTC
GCTGTTGAACCTTGTGCAGGAGCTGCACCCTTGACACCTTAAAGTGAGAG
CTTTCTGTACTTAAGATTGAGATGGCAAACGTTCAAGCGAGGAAAACTAT
AGCTAAATACTCGAATACCATCGACACGATGAACACGCCTTTACGACCAT
CTCCGACCGCGCGTCCCTCCGGGACGCGCGCCCTTTTTTTGTTCAGCCTA
GCGAAACGTCGTTTCGGAAATCGGTCCGCATTTCATGTTTACATATCCTG
AAGTACCTTTTCTCCTCTACCCTCTCTTCTGCTGCGTCGTGATCACTTCT
CTCAACTGCGTTAGTGACGCCCATCGGGACCAAGCCCTGGCAAATCGCGG
CAGAGGCTATCGCCGAAGCAGAGGCGGCGGAGCCTCTGAAGGATGACGAA
GTGGGACAGGACGACGCCAATCCCGCCAATTTAGAAAGCGGAAACCCTTC
AGAGTGGGAGTACAATGAAGCGACGGAATCAGGGAGGCCTGGCGGTCAGG
ACGAAGCCAACGAGAACCCTCCCACGCCGATCCTGGACGCGTACGAGCGG
TCGAAGGACCCCGTCGAGATGGAGCGGCTGATCCAAATGGCGTTCGACTC
GCTGCCGGAGCGTGCCGGGCCGCAACGGTACAACCACAAGAAGCGCGAGA
AGCTGCGGTACAAGACGATAAGGGTAAGTGTAAGAGTTGTAAGCTGGTCT
GAGCCATCATAGTCGCCTGCCGTGGCTACTGGTGTTGTTCGTGAATGCGA
GAAACGTTTCCTGGCTTTCGCAGTAGTACTACTGTATATTTAACAAGCCT
ATATTTCTTCGCCCTGGGTGGACCGACAAAGATCGACCGGCTAGTCGGTT
TCGTGATCGACCGGAAAACGTGCGATTTTCGCTTACCCTTGCGTTTTCCC
TTGCCATTGCTTTCTCCCCCTTGCCATTGCTTTCTCCCCCTTGCCCTTAA
GAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGCGGCGTACGAGCGCA
AGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGCAGGCCTTGTTCGCG
ACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGCGCCGCCGCCACCAT
TAAGGATTAAATATGCTTTTTGGACAAACCTCTGGAATAAGTATACAGTA
CAAGTTCGTTCATGGCCCAAAGAATATGTCTGGACTTCTTGTGCTTCCGC
CGTCGTGTGAGAGCTACGTTTTACATTCCAATCGAAGCTCAAAATGACTA
GCTGGTACAGTGTTGAAGGGCGCTCATCGGGCGGGGATGCCATCCCCCGA
GGACAGTGTGTCCGGTGGTCGCCCTGCCGTACCGGAGCAGACTTCGCGAA
GAGTTAAAGGTAGTAGTGTCAAGTGAGGTTGGATGTTTTTCGTTTTGTGT
ACCATGTTCTACAATATTAAATTTATGTACCGTTCTGTATATGGTGCCCT
TATTTTTGGGGCTTGAAGGTCTGGATGCGTGCGGCTGTTTGCTGGCTCCG
AACGAGAATTTTGCCGGCAATTTCAGCTGGCGTGTCTCTACAGTCGAAGT
TTTATTGAGGACAGTTACACCTTACATTGGGGGCTGTACCATTATTGCAC
AATTGACATGGTTTCGTGCTGTGTACCCGGTTCCAGACGCGCTCGCGTTT
CCTTTGTTGCGTTGTTGGAGATTTCCAACGACTATGACTAGATTTGTCAT
AATATCACGTCAATATAGACCAGCCTACAGTTTCCGGAGGCAGCTTTGTC
GTGTCGGAAGCCTTGAAGATTCTCTTTGGCCTTATCCGAGTGGCTCAGAG
GAAGGTGAACGTCACCAGAAGGAGGAAACCGCACAACCCGAAGTGGAAGG
TCAAAAGACAACCAAATACTGTTATCTTGCCCGACCATCACACTTTTTTT
TCAACCCGGTC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1002:180472..184082+ >mRNA_F-serratus_M_contig1002.133.1 ID=mRNA_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=CDS|length=1524bp|location=Sequence derived from alignment at F-serratus_M_contig1002:180472..184082+ (Fucus serratus male) ATGATTGCACGATCATTTAGCCGTGCTTCATTGTCCGCAGCAAATCATGC GCGTGCTAGAGCACGGATGTGTACAGCTGCGTTAGTGGAGGCGACCTCAG CTTTCGCCCGCACACCTCCACCACCGCCACAACATCCGTACCCCTTCCAT CTCCCTACTACGGCGCGATTTGTCACCGGCCGCCGGCATATGTCGTCGCG CCGAAAGAACTTGAACGAAAAGAACCAGGAGAAAATGATTGACGATGATT GCACGATCATTTAGCCGTGCTTCATTGTCCGCAGCAAATCATGCGCGTGC TAGAGCACGGATGTGTACAGCTGCGTTAGTGGAGGCGACCTCAGCTTTCG CCCGCACACCTCCACCACCGCCACAACATCCGTACCCCTTCCATCTCCCT ACTACGGCGCGATTTGTCACCGGCCGCCGGCATATGTCGTCGCGCCGAAA GAACTTGAACGAAAAGAACCAGGAGAAAATGATTGACGTGACGCCCATCG GGACCAAGCCCTGGCAAATCGCGGCAGAGGCTATCGCCGAAGCAGAGGCG GCGGAGCCTCTGAAGGATGACGAAGTGGGACAGGACGACGCCAATCCCGC CAATTTAGAAAGCGGAAACCCTTCAGAGTGGGAGTACAATGAAGCGACGG AATCAGGGAGGCCTGGCGGTCAGGACGAAGCCAACGAGAACCCTCCCACG CCGATCCTGGACGCGTACGAGCGGTCGAAGGACCCCGTCGAGATGGAGCG GCTGATCCAAATGGCGTTCGACTCGCTGCCGGAGCGTGCCGGGCCGCAAC GGTACAACCACAAGAAGCGCGAGAAGCTGCGGTACAAGACGATAAGGTGA CGCCCATCGGGACCAAGCCCTGGCAAATCGCGGCAGAGGCTATCGCCGAA GCAGAGGCGGCGGAGCCTCTGAAGGATGACGAAGTGGGACAGGACGACGC CAATCCCGCCAATTTAGAAAGCGGAAACCCTTCAGAGTGGGAGTACAATG AAGCGACGGAATCAGGGAGGCCTGGCGGTCAGGACGAAGCCAACGAGAAC CCTCCCACGCCGATCCTGGACGCGTACGAGCGGTCGAAGGACCCCGTCGA GATGGAGCGGCTGATCCAAATGGCGTTCGACTCGCTGCCGGAGCGTGCCG GGCCGCAACGGTACAACCACAAGAAGCGCGAGAAGCTGCGGTACAAGACG ATAAGGAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGCGGCGTACGA GCGCAAGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGCAGGCCTTGT TCGCGACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGCGCCGCCGCC ACCATTAAGGATTAAAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGC GGCGTACGAGCGCAAGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGC AGGCCTTGTTCGCGACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGC GCCGCCGCCACCATTAAGGATTAA back to top
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