mRNA_F-serratus_M_contig1002.133.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.133.1
Unique NamemRNA_F-serratus_M_contig1002.133.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1002.133.1 vs. uniprot
Match: D8LTA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA2_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 7.310e-63
Identity = 139/273 (50.92%), Postives = 174/273 (63.74%), Query Frame = 3 
Query:   75 VMIARSFSRASLSAANHARARARMCTAALVEATSAFARTPP--------PPPQHPYPF---HLPTTARFVTGRRHMSSRRKNLNEKNQEKMIDVTPIGTKPWQIAAEAIAEAEAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATE----------SGRPGGQDEANE---NPPTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQRYNHKKREKLRYKTIRNIKYKEKAQRMAAYERKLQKRRDRKAREQALFATWRGTGDSDTASAA 821
            +M+ARS SR +  +A       R C ++LV   ++ +  P         P    P  +    LP  ++  + RRH+SS R   +    E  +DVTPIG KP QI  EAIAEAEA+E L DD++           SG PS+WEY+ +TE          +GR G +DE +E   NPPTPILDAYE+S+DP EMERLI +AFDSLPERAGPQRYNHK+RE  RY+TIRNIKYKEKAQR AA+ERKLQKRRDRKAR+ ALFATWR TG ++  + A
Sbjct:    1 MMLARSISRVAAGSARRVHDGQRACISSLVGGCNSPSSMPAVDESAAARPKVSRPAAWGVASLPEPSKVGSCRRHLSSGRPPFDMGEDENEVDVTPIGNKPGQITREAIAEAEASEDLDDDDIF----------SGKPSDWEYDASTEEAGHDSEKAEAGREGFRDEGDEGDENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQRYNHKRREHQRYRTIRNIKYKEKAQRTAAHERKLQKRRDRKARDLALFATWRETGPAEETADA 263
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BLAST of mRNA_F-serratus_M_contig1002.133.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.130e-19
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 3 
Query:  351 IAAEAIAEAEAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATE----------SGRPGGQDEANE---NPPTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQ 632
            I  EAIAEAEA+E L DD++           SG PS+WEY+ +TE          +GR G QDE +E   NPPTPILDAYE+S+DP EMERLI +AFDSLPERAGPQ
Sbjct:    8 ITREAIAEAEASEDLDDDDIF----------SGKPSDWEYDASTEEVRHDSEEAEAGREGLQDEGHEGEENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQ 104
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA2_ECTSI7.310e-6350.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLM8_9PHAE6.130e-1957.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:180472..184082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005800.1
Exons3
Model size1640
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.133.1prot_F-serratus_M_contig1002.133.1Fucus serratus malepolypeptideF-serratus_M_contig1002 180549..183281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.5736814-UTR-F-serratus_M_contig1002:180471..1805481622928793.5736814-UTR-F-serratus_M_contig1002:180471..180548Fucus serratus maleUTRF-serratus_M_contig1002 180472..180548 +
1690962574.6492534-UTR-F-serratus_M_contig1002:180471..1805481690962574.6492534-UTR-F-serratus_M_contig1002:180471..180548Fucus serratus maleUTRF-serratus_M_contig1002 180472..180548 +
1622928793.6414378-UTR-F-serratus_M_contig1002:183281..1840821622928793.6414378-UTR-F-serratus_M_contig1002:183281..184082Fucus serratus maleUTRF-serratus_M_contig1002 183282..184082 +
1690962574.6845932-UTR-F-serratus_M_contig1002:183281..1840821690962574.6845932-UTR-F-serratus_M_contig1002:183281..184082Fucus serratus maleUTRF-serratus_M_contig1002 183282..184082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.5908399-CDS-F-serratus_M_contig1002:180548..1807921622928793.5908399-CDS-F-serratus_M_contig1002:180548..180792Fucus serratus maleCDSF-serratus_M_contig1002 180549..180792 +
1690962574.6591208-CDS-F-serratus_M_contig1002:180548..1807921690962574.6591208-CDS-F-serratus_M_contig1002:180548..180792Fucus serratus maleCDSF-serratus_M_contig1002 180549..180792 +
1622928793.6057646-CDS-F-serratus_M_contig1002:182485..1828441622928793.6057646-CDS-F-serratus_M_contig1002:182485..182844Fucus serratus maleCDSF-serratus_M_contig1002 182486..182844 +
1690962574.6678395-CDS-F-serratus_M_contig1002:182485..1828441690962574.6678395-CDS-F-serratus_M_contig1002:182485..182844Fucus serratus maleCDSF-serratus_M_contig1002 182486..182844 +
1622928793.6289663-CDS-F-serratus_M_contig1002:183122..1832811622928793.6289663-CDS-F-serratus_M_contig1002:183122..183281Fucus serratus maleCDSF-serratus_M_contig1002 183123..183281 +
1690962574.6762633-CDS-F-serratus_M_contig1002:183122..1832811690962574.6762633-CDS-F-serratus_M_contig1002:183122..183281Fucus serratus maleCDSF-serratus_M_contig1002 183123..183281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.133.1

>prot_F-serratus_M_contig1002.133.1 ID=prot_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=polypeptide|length=254bp
MIARSFSRASLSAANHARARARMCTAALVEATSAFARTPPPPPQHPYPFH
LPTTARFVTGRRHMSSRRKNLNEKNQEKMIDVTPIGTKPWQIAAEAIAEA
EAAEPLKDDEVGQDDANPANLESGNPSEWEYNEATESGRPGGQDEANENP
PTPILDAYERSKDPVEMERLIQMAFDSLPERAGPQRYNHKKREKLRYKTI
RNIKYKEKAQRMAAYERKLQKRRDRKAREQALFATWRGTGDSDTASAAAT
IKD*
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mRNA from alignment at F-serratus_M_contig1002:180472..184082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.133.1 ID=mRNA_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=mRNA|length=3611bp|location=Sequence derived from alignment at F-serratus_M_contig1002:180472..184082+ (Fucus serratus male)
CGTGATGTTTGCATAGCTCTTGTGGGCGCTTTGACACGTACCACCCAATC
CCGTCACACGAAGAGATCATAGCTGTCATGATTGCACGATCATTTAGCCG
TGCTTCATTGTCCGCAGCAAATCATGCGCGTGCTAGAGCACGGATGTGTA
CAGCTGCGTTAGTGGAGGCGACCTCAGCTTTCGCCCGCACACCTCCACCA
CCGCCACAACATCCGTACCCCTTCCATCTCCCTACTACGGCGCGATTTGT
CACCGGCCGCCGGCATATGTCGTCGCGCCGAAAGAACTTGAACGAAAAGA
ACCAGGAGAAAATGATTGACGGTGAGTTGCACTGCATGAGTGCGCGTGTT
AATCGGCCTAAAAGTTTTGGCGTGGACGGAGGTTAATAAGTACTTACACG
TGGTACCTCCGCTCGCACTAGTCTCGCCTCGGTCAAGATGCGCCATGTCT
TGTGCGAAGGACACAATTATTCATACAGTACTGTATCAGAGCTAGACCAA
TACAGTAGCTTTCCTCACCGTACAAACGTCTTTCGTGGTTTGCGCTTACC
CCGATCCCCCCTTGAGCACACCTACTCCATACGATATTGTAGAGAGCTTT
TTACAAGACAACTGCTTTCGTCATGTTCATGTTCATGTTACCGCAGCTGA
TGGAGTGAAGAAACCAAACCACATACTACTCGTACTCGTAAAGCAATTCG
CAACGCCGGGCAGGAAGGCCATTGAAAAAGCGGTTCCCAACTGACTCGTA
CTCGGGAGTATGCATTTCGATCCAACTTGAGCGTGATGGAGCATATCCAC
CCGTCCTCTCGGCAGCCTATTTTCCTCGGCGGTGTGAGAATGATTATTGT
TGCACGAGCTGTCTTCAGCAGCAACTCCAAATTGGGGGGGATTTGCGAAT
GCTACCGAGTATCGTACAAATTCTCAAGCGCGAACACGGGCAGGGATCGT
TCACTTTCCCTGTTCAGACCACGAGCAGGATTGGCAACGTTAGCTTTACC
CGGCTGATCCATTATCTGCTGTAGGCGGTGACCCTACATGGATACATAAT
CGTACATATCTGGAGCTGGAGTCAGTTTTAACCTGTTTAAACCTGGGTGT
GAAGAATGAGCGGACAGAGGCGGGACAGCACAGCCAAACCTGGCTTGCGA
GACCGAATTCTAAAGCTCGAACTCGCACAGAGAAATTCCAGTTATCCTGT
CCGTGAAGACCACTCCCACCCTTACCTTTACATTTACCTTTACCCCCGCA
TACGTACAGCAGCGTGGTTACGTTTTCCACTTGATTATCGGCAAAGTCCT
TTAGTCCTTTCTCTATATCGACGACCGCTCTACAAGAAGTAGAACTCCAT
GAGTAAAGCGACGACCGCATTTTGTTACTGTAGCAGGTTATTATTATGGA
AATAGTTCATCGCCACGCGTCGTATGAAGTGACGACGCCTTGACTTGTTA
TCTCGATGCGACCGTCTTCACGCGGGCTTACGGTGCGCGATAGCATGGAG
GCTTTACTACCTCCGTTTGAGTACAGTTGTAGAGTGGGTGGGGCGGCTGG
CTCCCCCATCGTAGATGTTCGTTGCAGTCACTGTTAATAGCGGCACCAAC
TGCCGTCTAGAGTTAGAGTGGCGCGTGTCTTCCACGGTACCGAAAATCGG
AGTCCCGTCTATACCACCACCAAGCAGTGTACCCGAGTGCTTTTTTTTTC
GCTGTTGAACCTTGTGCAGGAGCTGCACCCTTGACACCTTAAAGTGAGAG
CTTTCTGTACTTAAGATTGAGATGGCAAACGTTCAAGCGAGGAAAACTAT
AGCTAAATACTCGAATACCATCGACACGATGAACACGCCTTTACGACCAT
CTCCGACCGCGCGTCCCTCCGGGACGCGCGCCCTTTTTTTGTTCAGCCTA
GCGAAACGTCGTTTCGGAAATCGGTCCGCATTTCATGTTTACATATCCTG
AAGTACCTTTTCTCCTCTACCCTCTCTTCTGCTGCGTCGTGATCACTTCT
CTCAACTGCGTTAGTGACGCCCATCGGGACCAAGCCCTGGCAAATCGCGG
CAGAGGCTATCGCCGAAGCAGAGGCGGCGGAGCCTCTGAAGGATGACGAA
GTGGGACAGGACGACGCCAATCCCGCCAATTTAGAAAGCGGAAACCCTTC
AGAGTGGGAGTACAATGAAGCGACGGAATCAGGGAGGCCTGGCGGTCAGG
ACGAAGCCAACGAGAACCCTCCCACGCCGATCCTGGACGCGTACGAGCGG
TCGAAGGACCCCGTCGAGATGGAGCGGCTGATCCAAATGGCGTTCGACTC
GCTGCCGGAGCGTGCCGGGCCGCAACGGTACAACCACAAGAAGCGCGAGA
AGCTGCGGTACAAGACGATAAGGGTAAGTGTAAGAGTTGTAAGCTGGTCT
GAGCCATCATAGTCGCCTGCCGTGGCTACTGGTGTTGTTCGTGAATGCGA
GAAACGTTTCCTGGCTTTCGCAGTAGTACTACTGTATATTTAACAAGCCT
ATATTTCTTCGCCCTGGGTGGACCGACAAAGATCGACCGGCTAGTCGGTT
TCGTGATCGACCGGAAAACGTGCGATTTTCGCTTACCCTTGCGTTTTCCC
TTGCCATTGCTTTCTCCCCCTTGCCATTGCTTTCTCCCCCTTGCCCTTAA
GAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGCGGCGTACGAGCGCA
AGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGCAGGCCTTGTTCGCG
ACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGCGCCGCCGCCACCAT
TAAGGATTAAATATGCTTTTTGGACAAACCTCTGGAATAAGTATACAGTA
CAAGTTCGTTCATGGCCCAAAGAATATGTCTGGACTTCTTGTGCTTCCGC
CGTCGTGTGAGAGCTACGTTTTACATTCCAATCGAAGCTCAAAATGACTA
GCTGGTACAGTGTTGAAGGGCGCTCATCGGGCGGGGATGCCATCCCCCGA
GGACAGTGTGTCCGGTGGTCGCCCTGCCGTACCGGAGCAGACTTCGCGAA
GAGTTAAAGGTAGTAGTGTCAAGTGAGGTTGGATGTTTTTCGTTTTGTGT
ACCATGTTCTACAATATTAAATTTATGTACCGTTCTGTATATGGTGCCCT
TATTTTTGGGGCTTGAAGGTCTGGATGCGTGCGGCTGTTTGCTGGCTCCG
AACGAGAATTTTGCCGGCAATTTCAGCTGGCGTGTCTCTACAGTCGAAGT
TTTATTGAGGACAGTTACACCTTACATTGGGGGCTGTACCATTATTGCAC
AATTGACATGGTTTCGTGCTGTGTACCCGGTTCCAGACGCGCTCGCGTTT
CCTTTGTTGCGTTGTTGGAGATTTCCAACGACTATGACTAGATTTGTCAT
AATATCACGTCAATATAGACCAGCCTACAGTTTCCGGAGGCAGCTTTGTC
GTGTCGGAAGCCTTGAAGATTCTCTTTGGCCTTATCCGAGTGGCTCAGAG
GAAGGTGAACGTCACCAGAAGGAGGAAACCGCACAACCCGAAGTGGAAGG
TCAAAAGACAACCAAATACTGTTATCTTGCCCGACCATCACACTTTTTTT
TCAACCCGGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1002:180472..184082+

>mRNA_F-serratus_M_contig1002.133.1 ID=mRNA_F-serratus_M_contig1002.133.1|Name=mRNA_F-serratus_M_contig1002.133.1|organism=Fucus serratus male|type=CDS|length=1524bp|location=Sequence derived from alignment at F-serratus_M_contig1002:180472..184082+ (Fucus serratus male)
ATGATTGCACGATCATTTAGCCGTGCTTCATTGTCCGCAGCAAATCATGC
GCGTGCTAGAGCACGGATGTGTACAGCTGCGTTAGTGGAGGCGACCTCAG
CTTTCGCCCGCACACCTCCACCACCGCCACAACATCCGTACCCCTTCCAT
CTCCCTACTACGGCGCGATTTGTCACCGGCCGCCGGCATATGTCGTCGCG
CCGAAAGAACTTGAACGAAAAGAACCAGGAGAAAATGATTGACGATGATT
GCACGATCATTTAGCCGTGCTTCATTGTCCGCAGCAAATCATGCGCGTGC
TAGAGCACGGATGTGTACAGCTGCGTTAGTGGAGGCGACCTCAGCTTTCG
CCCGCACACCTCCACCACCGCCACAACATCCGTACCCCTTCCATCTCCCT
ACTACGGCGCGATTTGTCACCGGCCGCCGGCATATGTCGTCGCGCCGAAA
GAACTTGAACGAAAAGAACCAGGAGAAAATGATTGACGTGACGCCCATCG
GGACCAAGCCCTGGCAAATCGCGGCAGAGGCTATCGCCGAAGCAGAGGCG
GCGGAGCCTCTGAAGGATGACGAAGTGGGACAGGACGACGCCAATCCCGC
CAATTTAGAAAGCGGAAACCCTTCAGAGTGGGAGTACAATGAAGCGACGG
AATCAGGGAGGCCTGGCGGTCAGGACGAAGCCAACGAGAACCCTCCCACG
CCGATCCTGGACGCGTACGAGCGGTCGAAGGACCCCGTCGAGATGGAGCG
GCTGATCCAAATGGCGTTCGACTCGCTGCCGGAGCGTGCCGGGCCGCAAC
GGTACAACCACAAGAAGCGCGAGAAGCTGCGGTACAAGACGATAAGGTGA
CGCCCATCGGGACCAAGCCCTGGCAAATCGCGGCAGAGGCTATCGCCGAA
GCAGAGGCGGCGGAGCCTCTGAAGGATGACGAAGTGGGACAGGACGACGC
CAATCCCGCCAATTTAGAAAGCGGAAACCCTTCAGAGTGGGAGTACAATG
AAGCGACGGAATCAGGGAGGCCTGGCGGTCAGGACGAAGCCAACGAGAAC
CCTCCCACGCCGATCCTGGACGCGTACGAGCGGTCGAAGGACCCCGTCGA
GATGGAGCGGCTGATCCAAATGGCGTTCGACTCGCTGCCGGAGCGTGCCG
GGCCGCAACGGTACAACCACAAGAAGCGCGAGAAGCTGCGGTACAAGACG
ATAAGGAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGCGGCGTACGA
GCGCAAGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGCAGGCCTTGT
TCGCGACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGCGCCGCCGCC
ACCATTAAGGATTAAAATATCAAGTACAAAGAGAAGGCTCAGCGTATGGC
GGCGTACGAGCGCAAGCTGCAGAAGAGGAGGGATCGAAAGGCGCGCGAGC
AGGCCTTGTTCGCGACGTGGCGGGGCACCGGTGACTCCGACACAGCCAGC
GCCGCCGCCACCATTAAGGATTAA
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