mRNA_F-serratus_M_contig10.88.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.88.1
Unique NamemRNA_F-serratus_M_contig10.88.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig10.88.1 vs. uniprot
Match: A0A6H5KNC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.170e-10
Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = 1 
Query:  427 MAFFNDPSSERFAASS--APGMDNRRVLYLMRAFETRLWEVDVQVDSITCVCFGITGLPYSRVSSRYHELVSRLSQVRIMVMEQKKVGDY------MPGVTLLVEVLEHDRVNLTIVKVSTPRDLIEEIFDEPISDEELETVISFVCSFNQWCG 864
            MAFFND   E        A  +   + L LMR+FETRLWE+DVQV  I C+ FG         ++   E++ R S V + V ++   G        +    LL E +    + L +V      ++   +F  PI+  + +T+I F+    QWCG
Sbjct:    1 MAFFNDQQKEETTDDEVQAEYVAGDQRLALMRSFETRLWELDVQVQGIKCIGFG------QGQAAPPSEVIQRCSDVGVSVAQENPGGFAALSPWPVSCPLLLAESVGSHFLRLYLVTADGGHEVRSLLFLSPITTHDFDTLIHFMLGMRQWCG 148
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNC6_9PHAE6.170e-1031.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:908567..910850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_005860.1
Exons1
Model size2284
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.88.1prot_F-serratus_M_contig10.88.1Fucus serratus malepolypeptideF-serratus_M_contig10 908762..909439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.3210235-UTR-F-serratus_M_contig10:908566..9087611622928786.3210235-UTR-F-serratus_M_contig10:908566..908761Fucus serratus maleUTRF-serratus_M_contig10 908567..908761 +
1690962570.6805239-UTR-F-serratus_M_contig10:908566..9087611690962570.6805239-UTR-F-serratus_M_contig10:908566..908761Fucus serratus maleUTRF-serratus_M_contig10 908567..908761 +
1622928786.342806-UTR-F-serratus_M_contig10:909439..9108501622928786.342806-UTR-F-serratus_M_contig10:909439..910850Fucus serratus maleUTRF-serratus_M_contig10 909440..910850 +
1690962570.7089782-UTR-F-serratus_M_contig10:909439..9108501690962570.7089782-UTR-F-serratus_M_contig10:909439..910850Fucus serratus maleUTRF-serratus_M_contig10 909440..910850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.3323514-CDS-F-serratus_M_contig10:908761..9094391622928786.3323514-CDS-F-serratus_M_contig10:908761..909439Fucus serratus maleCDSF-serratus_M_contig10 908762..909439 +
1690962570.6975052-CDS-F-serratus_M_contig10:908761..9094391690962570.6975052-CDS-F-serratus_M_contig10:908761..909439Fucus serratus maleCDSF-serratus_M_contig10 908762..909439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.88.1

>prot_F-serratus_M_contig10.88.1 ID=prot_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=polypeptide|length=226bp
MLPSLRFPSSGRKKTRKSQAALEARASKRPSSSSPPREDTLGLRQQRPPF
NCSAAAPSDRQDATEDREAEGLQTPRSMAFFNDPSSERFAASSAPGMDNR
RVLYLMRAFETRLWEVDVQVDSITCVCFGITGLPYSRVSSRYHELVSRLS
QVRIMVMEQKKVGDYMPGVTLLVEVLEHDRVNLTIVKVSTPRDLIEEIFD
EPISDEELETVISFVCSFNQWCGRS*
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mRNA from alignment at F-serratus_M_contig10:908567..910850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.88.1 ID=mRNA_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=mRNA|length=2284bp|location=Sequence derived from alignment at F-serratus_M_contig10:908567..910850+ (Fucus serratus male)
GAAAAAACACTCATCATCTCATTCATCCTCACCTACCGGGCCAGAATCAA
CAACAGCAGTTCTCTTCAACCTAGCGCTCCTAGGCCCAAGGTCCACCCAC
TCTACAATTGTGAATAAGCCAAGAGATTGAGAGACAAATTCCACGTTCGC
CTACGATCCCGCCTCGTCCTGTATTACGCGAATTTGAGTGTGAAGATGCT
CCCTTCTCTTCGATTTCCTTCCAGCGGACGCAAGAAGACCAGAAAATCAC
AAGCAGCGCTCGAAGCCCGCGCAAGTAAGAGACCCAGCAGCTCAAGCCCG
CCGCGAGAGGATACCCTCGGACTGAGGCAACAGCGGCCACCCTTCAACTG
CTCTGCAGCAGCGCCATCTGATCGGCAAGACGCCACCGAGGACCGGGAAG
CGGAAGGTTTGCAGACGCCGCGGTCCATGGCCTTCTTCAACGACCCCAGT
TCTGAGCGGTTTGCTGCCTCTTCTGCTCCTGGGATGGACAATCGGAGGGT
CCTGTATCTTATGCGTGCGTTTGAGACAAGACTCTGGGAGGTGGACGTCC
AGGTTGACAGCATCACCTGTGTATGTTTCGGGATAACTGGACTGCCATAC
TCGAGGGTTAGCAGTCGGTACCACGAGCTAGTCTCGAGGTTGAGTCAGGT
GCGGATCATGGTTATGGAACAGAAGAAGGTCGGTGATTATATGCCAGGAG
TCACCCTTCTAGTCGAAGTTCTAGAGCACGATCGCGTTAATCTTACCATC
GTAAAGGTGTCCACCCCTCGAGACCTTATTGAGGAGATCTTCGACGAGCC
AATATCGGATGAAGAACTAGAGACCGTGATTTCGTTTGTGTGCTCCTTCA
ACCAATGGTGCGGGCGGTCCTGAGCTGTTGAACTACAAACAGTAGTCTAT
ACTTCAATTTTCTCTCTATACTAGCTATACCTAAAAGGGTGGTACTGCTG
TGCTGTGCTGTGTGTGTACTATAACTCAGTTGATGAACCTCGCCTGCCTG
AAGCGTGCATCCTGCTCGAAATCAACACGATACCGCCGCGGTACCGGTAG
TTTTCGGAAATGACTTACCAATATAACGGTTTCGCTCTAGCTCTAGCTCT
ACCGCCGATGCCGAGTAGTTCATGTTTGCTCTGTTTGTAACATGTCGCGC
CTTCTTGTTGTCACCACATGTCAGAGGTATAGCTAGACTACCGTACTATT
TATAGTAATATTCTCTTGAAACTGTGTGTAGCACAGACGGTTGATGTTGT
TCCTCTTTTCCTGTTGAACATAATATATTTATTTCGTTGAAAACATCATG
CCACGTTCGTGTATCCAGCTCGGGGGGGCATCGCAGAGCTTTCTAGTTTT
CTACCAGTACGTGTTTTTGTGAATCATCAGGGTACTACTGTATATCACAG
TGCCAGCTTTCGCATGTGAAAGAGCGCCTTATGAGACACGATCGAACAAT
GATGAACCCTAAGCACGGCGATTTTCTCGCGAGTGTCGATCGCGGATGAT
CGAAAATACTGTTCATGGTTGACGCAGCAGATAAGACGGTTGGAATCAAA
AACGGACATTTTAAGTCCGTGGCGAATGAATGCCATGCTCGAGGGTATAA
TTCACCATTTTTTTTGTACAGCGCGAGCATTTATTTGCCGATGTTCTTGC
GAGGCTATCCGGTCGAACGCCGGGTCAGAGAGGCCGCCTGAAGTCATTTT
GTCCACAGGAGTATTGAAAATAATGTTGTGCAAGCGCTTTTTCCCGGTGG
TTCGCAACTGGTAAGCTGAACGATCAGTTTCACAGCAGTCCCTGAGTTCG
AATTTGGGGTGGAATGCTGCTTGTCGTCGTATTCTATTAATAGAATAAAG
TACTAATAGTGGAAAGGGCGAGAAATCATTATATACTATATAGGCTATAT
ACTTTACTGGCAGGTGTAGTGGGAGTGTCCTATCAATACTATATAGTATA
TGACTGTAAGAAAGACAGGGGGGGAAAAAAGGTCCAACCATTCGTTGACA
AGACGGTTGAGACACGGCATGACCCGTCAGCCTCCGCGGGAGAAATTTGA
AGGTTCAAAATTATAACCGCTGTATAACCCTGAGGACCCCAGCCGGGATG
ATGGCGGATGGGCAACGTTGCGGTGGGTAGAGACTGACAAGTAAATTATC
ATTATGGATGCTTAAAGTAATATTGTAGCTCCTTGAATGGCCCCGTCGGC
AGAAACAAAAAAATAACCCCTCCCCGCGCCAAAAAAAAACAGCTTTACGA
TCGATGTAGATATAGTGCATACATAATACGTCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:908567..910850+

>mRNA_F-serratus_M_contig10.88.1 ID=mRNA_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig10:908567..910850+ (Fucus serratus male)
ATGCTCCCTTCTCTTCGATTTCCTTCCAGCGGACGCAAGAAGACCAGAAA
ATCACAAGCAGCGCTCGAAGCCCGCGCAAGTAAGAGACCCAGCAGCTCAA
GCCCGCCGCGAGAGGATACCCTCGGACTGAGGCAACAGCGGCCACCCTTC
AACTGCTCTGCAGCAGCGCCATCTGATCGGCAAGACGCCACCGAGGACCG
GGAAGCGGAAGGTTTGCAGACGCCGCGGTCCATGGCCTTCTTCAACGACC
CCAGTTCTGAGCGGTTTGCTGCCTCTTCTGCTCCTGGGATGGACAATCGG
AGGGTCCTGTATCTTATGCGTGCGTTTGAGACAAGACTCTGGGAGGTGGA
CGTCCAGGTTGACAGCATCACCTGTGTATGTTTCGGGATAACTGGACTGC
CATACTCGAGGGTTAGCAGTCGGTACCACGAGCTAGTCTCGAGGTTGAGT
CAGGTGCGGATCATGGTTATGGAACAGAAGAAGGTCGGTGATTATATGCC
AGGAGTCACCCTTCTAGTCGAAGTTCTAGAGCACGATCGCGTTAATCTTA
CCATCGTAAAGGTGTCCACCCCTCGAGACCTTATTGAGGAGATCTTCGAC
GAGCCAATATCGGATGAAGAACTAGAGACCGTGATTTCGTTTGTGTGCTC
CTTCAACCAATGGTGCGGGCGGTCCTGAATGCTCCCTTCTCTTCGATTTC
CTTCCAGCGGACGCAAGAAGACCAGAAAATCACAAGCAGCGCTCGAAGCC
CGCGCAAGTAAGAGACCCAGCAGCTCAAGCCCGCCGCGAGAGGATACCCT
CGGACTGAGGCAACAGCGGCCACCCTTCAACTGCTCTGCAGCAGCGCCAT
CTGATCGGCAAGACGCCACCGAGGACCGGGAAGCGGAAGGTTTGCAGACG
CCGCGGTCCATGGCCTTCTTCAACGACCCCAGTTCTGAGCGGTTTGCTGC
CTCTTCTGCTCCTGGGATGGACAATCGGAGGGTCCTGTATCTTATGCGTG
CGTTTGAGACAAGACTCTGGGAGGTGGACGTCCAGGTTGACAGCATCACC
TGTGTATGTTTCGGGATAACTGGACTGCCATACTCGAGGGTTAGCAGTCG
GTACCACGAGCTAGTCTCGAGGTTGAGTCAGGTGCGGATCATGGTTATGG
AACAGAAGAAGGTCGGTGATTATATGCCAGGAGTCACCCTTCTAGTCGAA
GTTCTAGAGCACGATCGCGTTAATCTTACCATCGTAAAGGTGTCCACCCC
TCGAGACCTTATTGAGGAGATCTTCGACGAGCCAATATCGGATGAAGAAC
TAGAGACCGTGATTTCGTTTGTGTGCTCCTTCAACCAATGGTGCGGGCGG
TCCTGA
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