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Homology
BLAST of mRNA_F-serratus_M_contig10.88.1 vs. uniprot
Match: A0A6H5KNC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC6_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.170e-10 Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = 1
Query: 427 MAFFNDPSSERFAASS--APGMDNRRVLYLMRAFETRLWEVDVQVDSITCVCFGITGLPYSRVSSRYHELVSRLSQVRIMVMEQKKVGDY------MPGVTLLVEVLEHDRVNLTIVKVSTPRDLIEEIFDEPISDEELETVISFVCSFNQWCG 864
MAFFND E A + + L LMR+FETRLWE+DVQV I C+ FG ++ E++ R S V + V ++ G + LL E + + L +V ++ +F PI+ + +T+I F+ QWCG
Sbjct: 1 MAFFNDQQKEETTDDEVQAEYVAGDQRLALMRSFETRLWELDVQVQGIKCIGFG------QGQAAPPSEVIQRCSDVGVSVAQENPGGFAALSPWPVSCPLLLAESVGSHFLRLYLVTADGGHEVRSLLFLSPITTHDFDTLIHFMLGMRQWCG 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Hypothetical protein |
Ec32 ortholog | Ec-14_005860.1 |
Exons | 1 |
Model size | 2284 |
Cds size | 678 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928786.3210235-UTR-F-serratus_M_contig10:908566..908761 | 1622928786.3210235-UTR-F-serratus_M_contig10:908566..908761 | Fucus serratus male | UTR | F-serratus_M_contig10 908567..908761 + |
1690962570.6805239-UTR-F-serratus_M_contig10:908566..908761 | 1690962570.6805239-UTR-F-serratus_M_contig10:908566..908761 | Fucus serratus male | UTR | F-serratus_M_contig10 908567..908761 + |
1622928786.342806-UTR-F-serratus_M_contig10:909439..910850 | 1622928786.342806-UTR-F-serratus_M_contig10:909439..910850 | Fucus serratus male | UTR | F-serratus_M_contig10 909440..910850 + |
1690962570.7089782-UTR-F-serratus_M_contig10:909439..910850 | 1690962570.7089782-UTR-F-serratus_M_contig10:909439..910850 | Fucus serratus male | UTR | F-serratus_M_contig10 909440..910850 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928786.3323514-CDS-F-serratus_M_contig10:908761..909439 | 1622928786.3323514-CDS-F-serratus_M_contig10:908761..909439 | Fucus serratus male | CDS | F-serratus_M_contig10 908762..909439 + |
1690962570.6975052-CDS-F-serratus_M_contig10:908761..909439 | 1690962570.6975052-CDS-F-serratus_M_contig10:908761..909439 | Fucus serratus male | CDS | F-serratus_M_contig10 908762..909439 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig10.88.1 >prot_F-serratus_M_contig10.88.1 ID=prot_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=polypeptide|length=226bp
MLPSLRFPSSGRKKTRKSQAALEARASKRPSSSSPPREDTLGLRQQRPPF NCSAAAPSDRQDATEDREAEGLQTPRSMAFFNDPSSERFAASSAPGMDNR RVLYLMRAFETRLWEVDVQVDSITCVCFGITGLPYSRVSSRYHELVSRLS QVRIMVMEQKKVGDYMPGVTLLVEVLEHDRVNLTIVKVSTPRDLIEEIFD EPISDEELETVISFVCSFNQWCGRS* back to topmRNA from alignment at F-serratus_M_contig10:908567..910850+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig10.88.1 ID=mRNA_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=mRNA|length=2284bp|location=Sequence derived from alignment at F-serratus_M_contig10:908567..910850+ (Fucus serratus male) GAAAAAACACTCATCATCTCATTCATCCTCACCTACCGGGCCAGAATCAA
CAACAGCAGTTCTCTTCAACCTAGCGCTCCTAGGCCCAAGGTCCACCCAC
TCTACAATTGTGAATAAGCCAAGAGATTGAGAGACAAATTCCACGTTCGC
CTACGATCCCGCCTCGTCCTGTATTACGCGAATTTGAGTGTGAAGATGCT
CCCTTCTCTTCGATTTCCTTCCAGCGGACGCAAGAAGACCAGAAAATCAC
AAGCAGCGCTCGAAGCCCGCGCAAGTAAGAGACCCAGCAGCTCAAGCCCG
CCGCGAGAGGATACCCTCGGACTGAGGCAACAGCGGCCACCCTTCAACTG
CTCTGCAGCAGCGCCATCTGATCGGCAAGACGCCACCGAGGACCGGGAAG
CGGAAGGTTTGCAGACGCCGCGGTCCATGGCCTTCTTCAACGACCCCAGT
TCTGAGCGGTTTGCTGCCTCTTCTGCTCCTGGGATGGACAATCGGAGGGT
CCTGTATCTTATGCGTGCGTTTGAGACAAGACTCTGGGAGGTGGACGTCC
AGGTTGACAGCATCACCTGTGTATGTTTCGGGATAACTGGACTGCCATAC
TCGAGGGTTAGCAGTCGGTACCACGAGCTAGTCTCGAGGTTGAGTCAGGT
GCGGATCATGGTTATGGAACAGAAGAAGGTCGGTGATTATATGCCAGGAG
TCACCCTTCTAGTCGAAGTTCTAGAGCACGATCGCGTTAATCTTACCATC
GTAAAGGTGTCCACCCCTCGAGACCTTATTGAGGAGATCTTCGACGAGCC
AATATCGGATGAAGAACTAGAGACCGTGATTTCGTTTGTGTGCTCCTTCA
ACCAATGGTGCGGGCGGTCCTGAGCTGTTGAACTACAAACAGTAGTCTAT
ACTTCAATTTTCTCTCTATACTAGCTATACCTAAAAGGGTGGTACTGCTG
TGCTGTGCTGTGTGTGTACTATAACTCAGTTGATGAACCTCGCCTGCCTG
AAGCGTGCATCCTGCTCGAAATCAACACGATACCGCCGCGGTACCGGTAG
TTTTCGGAAATGACTTACCAATATAACGGTTTCGCTCTAGCTCTAGCTCT
ACCGCCGATGCCGAGTAGTTCATGTTTGCTCTGTTTGTAACATGTCGCGC
CTTCTTGTTGTCACCACATGTCAGAGGTATAGCTAGACTACCGTACTATT
TATAGTAATATTCTCTTGAAACTGTGTGTAGCACAGACGGTTGATGTTGT
TCCTCTTTTCCTGTTGAACATAATATATTTATTTCGTTGAAAACATCATG
CCACGTTCGTGTATCCAGCTCGGGGGGGCATCGCAGAGCTTTCTAGTTTT
CTACCAGTACGTGTTTTTGTGAATCATCAGGGTACTACTGTATATCACAG
TGCCAGCTTTCGCATGTGAAAGAGCGCCTTATGAGACACGATCGAACAAT
GATGAACCCTAAGCACGGCGATTTTCTCGCGAGTGTCGATCGCGGATGAT
CGAAAATACTGTTCATGGTTGACGCAGCAGATAAGACGGTTGGAATCAAA
AACGGACATTTTAAGTCCGTGGCGAATGAATGCCATGCTCGAGGGTATAA
TTCACCATTTTTTTTGTACAGCGCGAGCATTTATTTGCCGATGTTCTTGC
GAGGCTATCCGGTCGAACGCCGGGTCAGAGAGGCCGCCTGAAGTCATTTT
GTCCACAGGAGTATTGAAAATAATGTTGTGCAAGCGCTTTTTCCCGGTGG
TTCGCAACTGGTAAGCTGAACGATCAGTTTCACAGCAGTCCCTGAGTTCG
AATTTGGGGTGGAATGCTGCTTGTCGTCGTATTCTATTAATAGAATAAAG
TACTAATAGTGGAAAGGGCGAGAAATCATTATATACTATATAGGCTATAT
ACTTTACTGGCAGGTGTAGTGGGAGTGTCCTATCAATACTATATAGTATA
TGACTGTAAGAAAGACAGGGGGGGAAAAAAGGTCCAACCATTCGTTGACA
AGACGGTTGAGACACGGCATGACCCGTCAGCCTCCGCGGGAGAAATTTGA
AGGTTCAAAATTATAACCGCTGTATAACCCTGAGGACCCCAGCCGGGATG
ATGGCGGATGGGCAACGTTGCGGTGGGTAGAGACTGACAAGTAAATTATC
ATTATGGATGCTTAAAGTAATATTGTAGCTCCTTGAATGGCCCCGTCGGC
AGAAACAAAAAAATAACCCCTCCCCGCGCCAAAAAAAAACAGCTTTACGA
TCGATGTAGATATAGTGCATACATAATACGTCCC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig10:908567..910850+ >mRNA_F-serratus_M_contig10.88.1 ID=mRNA_F-serratus_M_contig10.88.1|Name=mRNA_F-serratus_M_contig10.88.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig10:908567..910850+ (Fucus serratus male) ATGCTCCCTTCTCTTCGATTTCCTTCCAGCGGACGCAAGAAGACCAGAAA ATCACAAGCAGCGCTCGAAGCCCGCGCAAGTAAGAGACCCAGCAGCTCAA GCCCGCCGCGAGAGGATACCCTCGGACTGAGGCAACAGCGGCCACCCTTC AACTGCTCTGCAGCAGCGCCATCTGATCGGCAAGACGCCACCGAGGACCG GGAAGCGGAAGGTTTGCAGACGCCGCGGTCCATGGCCTTCTTCAACGACC CCAGTTCTGAGCGGTTTGCTGCCTCTTCTGCTCCTGGGATGGACAATCGG AGGGTCCTGTATCTTATGCGTGCGTTTGAGACAAGACTCTGGGAGGTGGA CGTCCAGGTTGACAGCATCACCTGTGTATGTTTCGGGATAACTGGACTGC CATACTCGAGGGTTAGCAGTCGGTACCACGAGCTAGTCTCGAGGTTGAGT CAGGTGCGGATCATGGTTATGGAACAGAAGAAGGTCGGTGATTATATGCC AGGAGTCACCCTTCTAGTCGAAGTTCTAGAGCACGATCGCGTTAATCTTA CCATCGTAAAGGTGTCCACCCCTCGAGACCTTATTGAGGAGATCTTCGAC GAGCCAATATCGGATGAAGAACTAGAGACCGTGATTTCGTTTGTGTGCTC CTTCAACCAATGGTGCGGGCGGTCCTGAATGCTCCCTTCTCTTCGATTTC CTTCCAGCGGACGCAAGAAGACCAGAAAATCACAAGCAGCGCTCGAAGCC CGCGCAAGTAAGAGACCCAGCAGCTCAAGCCCGCCGCGAGAGGATACCCT CGGACTGAGGCAACAGCGGCCACCCTTCAACTGCTCTGCAGCAGCGCCAT CTGATCGGCAAGACGCCACCGAGGACCGGGAAGCGGAAGGTTTGCAGACG CCGCGGTCCATGGCCTTCTTCAACGACCCCAGTTCTGAGCGGTTTGCTGC CTCTTCTGCTCCTGGGATGGACAATCGGAGGGTCCTGTATCTTATGCGTG CGTTTGAGACAAGACTCTGGGAGGTGGACGTCCAGGTTGACAGCATCACC TGTGTATGTTTCGGGATAACTGGACTGCCATACTCGAGGGTTAGCAGTCG GTACCACGAGCTAGTCTCGAGGTTGAGTCAGGTGCGGATCATGGTTATGG AACAGAAGAAGGTCGGTGATTATATGCCAGGAGTCACCCTTCTAGTCGAA GTTCTAGAGCACGATCGCGTTAATCTTACCATCGTAAAGGTGTCCACCCC TCGAGACCTTATTGAGGAGATCTTCGACGAGCCAATATCGGATGAAGAAC TAGAGACCGTGATTTCGTTTGTGTGCTCCTTCAACCAATGGTGCGGGCGG TCCTGA back to top
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