mRNA_F-distichus_contig105838.497.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105838.497.1
Unique NamemRNA_F-distichus_contig105838.497.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: UPI000C75DDB7 (biogenesis of lysosome-related organelles complex 1 subunit 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75DDB7)

HSP 1 Score: 108 bits (269), Expect = 2.030e-27
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKRS 382
            LLEQMN VT+TKYSDM Q T N+ +GV E+N KY +LLPYL++I+QID S++RLEQAAYKLD +  SK LE KFKILEKRS
Sbjct:   80 LLEQMNRVTLTKYSDMRQITTNIDKGVSELNKKYENLLPYLDQIDQIDESISRLEQAAYKLDAY--SKRLEAKFKILEKRS 158
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: A0A482VUK9_9CUCU (BLOC1 2 domain containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VUK9_9CUCU)

HSP 1 Score: 96.3 bits (238), Expect = 1.870e-23
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE MN  TITKYSDM     NVS+ ++E+N KY+SL PYL++I+QI+ SV +LEQAAYKLD  ++SK LE KFK LEKR
Sbjct:   22 LLENMNRATITKYSDMKHIAANVSKSILELNEKYNSLQPYLQQIDQIEDSVVKLEQAAYKLD--VYSKRLEAKFKSLEKR 99
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: UPI0005C3B155 (biogenesis of lysosome-related organelles complex 1 subunit 2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI0005C3B155)

HSP 1 Score: 97.1 bits (240), Expect = 2.460e-23
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE +N +TITKY+DM + TEN+S+G+ E+N KYS+L P+LE+I QID +V  LEQAAYKLD +  SK LE KFK LEKR
Sbjct:   57 LLETLNKITITKYTDMKEFTENISRGLQELNEKYSNLHPFLEQINQIDENVTALEQAAYKLDNY--SKRLESKFKALEKR 134
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: A0A6J1S9Q0_FRAOC (biogenesis of lysosome-related organelles complex 1 subunit 2 n=2 Tax=Thripinae TaxID=153976 RepID=A0A6J1S9Q0_FRAOC)

HSP 1 Score: 94.4 bits (233), Expect = 3.480e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE MN  TI KYSDM Q + NVS+ + E+N KY SL PYL++I+QI+SSV +LEQAAYKLD +  SK LE KFK LEKR
Sbjct:   65 LLESMNQATIAKYSDMKQISGNVSRTITELNEKYMSLQPYLDQIDQIESSVNKLEQAAYKLDAY--SKRLETKFKSLEKR 142
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: K1PNI6_CRAGI (Heterogeneous nuclear ribonucleoprotein A/B n=2 Tax=Crassostrea TaxID=6564 RepID=K1PNI6_CRAGI)

HSP 1 Score: 97.1 bits (240), Expect = 5.040e-21
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE +N +TITKY+DM + TEN+S+G+ E+N KYS+L P+LE+I QID +V  LEQAAYKLD +  SK LE KFK LEKR
Sbjct:  398 LLETLNKITITKYTDMKEFTENISRGLQELNEKYSNLHPFLEQINQIDENVTALEQAAYKLDNY--SKRLESKFKALEKR 475
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: A0A6P7SK63_OCTVU (biogenesis of lysosome-related organelles complex 1 subunit 2 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SK63_OCTVU)

HSP 1 Score: 91.3 bits (225), Expect = 7.050e-21
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLEQMN VTI KYS+M     N+S+ +VE++ KY SL PYL++I+QI+ SV+ LEQAAY+LD +  SK LE KFK+L+KR
Sbjct:   74 LLEQMNQVTINKYSEMKHIAMNISRAMVELDDKYRSLQPYLDQIDQIEESVSNLEQAAYRLDAY--SKRLESKFKMLQKR 151
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: UPI00071C3091 (biogenesis of lysosome-related organelles complex 1 subunit 2-like isoform X1 n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071C3091)

HSP 1 Score: 89.7 bits (221), Expect = 3.360e-20
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLEQMN V+I KYS+M     N+S+ +VE++ KY SL PYL++I+QI+ SV+ LEQAAY+LD +  SK LE KFK+L+KR
Sbjct:   81 LLEQMNQVSINKYSEMKHIAMNISRAMVELDDKYRSLQPYLDQIDQIEESVSNLEQAAYRLDAY--SKRLESKFKMLQKR 158
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: UPI001B88B85F (biogenesis of lysosome-related organelles complex 1 subunit 2-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B85F)

HSP 1 Score: 87.8 bits (216), Expect = 1.550e-19
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE+MN VT+TKYS+M     NV+  + E+N KY SL PYL++I+QI+ SVA LEQAAY LD +  SK LE+KFK LEKR
Sbjct:   73 LLEKMNKVTLTKYSEMKHIALNVATALQELNEKYVSLQPYLDQIDQIEESVAGLEQAAYNLDQY--SKRLEEKFKSLEKR 150
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BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: A0A6J2YA03_SITOR (biogenesis of lysosome-related organelles complex 1 subunit 2 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YA03_SITOR)

HSP 1 Score: 87.4 bits (215), Expect = 1.790e-19
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE MN  TITKYSDM     NV + ++E+N K  SLLP L++I+Q++ SV +LEQAAYKLD  ++SK LE KF+ LEKR
Sbjct:   65 LLENMNKATITKYSDMKHIALNVGKSILELNDKCDSLLPLLQQIDQVEDSVTKLEQAAYKLD--VYSKRLEAKFRNLEKR 142
[Close]
BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Match: A0A210PV64_MIZYE (Biogenesis of lysosome-related organelles complex 1 subunit 2 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210PV64_MIZYE)

HSP 1 Score: 86.7 bits (213), Expect = 4.370e-19
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:  140 LLEQMNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARLEQAAYKLDTFIFSKSLEQKFKILEKR 379
            LLE MN +TI KYS+M Q  +++S  + ++N KY +L PYLE+I+ I+ +V+ LEQAAYKLD  ++SK LE KF+ LEKR
Sbjct:   73 LLENMNKITIAKYSEMKQLAQDISTSLQDLNDKYKTLQPYLEQIDHIEENVSNLEQAAYKLD--VYSKRLEAKFRALEKR 150
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105838.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C75DDB72.030e-2769.14biogenesis of lysosome-related organelles complex ... [more]
A0A482VUK9_9CUCU1.870e-2362.50BLOC1 2 domain containing protein n=1 Tax=Asbolus ... [more]
UPI0005C3B1552.460e-2362.50biogenesis of lysosome-related organelles complex ... [more]
A0A6J1S9Q0_FRAOC3.480e-2263.75biogenesis of lysosome-related organelles complex ... [more]
K1PNI6_CRAGI5.040e-2162.50Heterogeneous nuclear ribonucleoprotein A/B n=2 Ta... [more]
A0A6P7SK63_OCTVU7.050e-2158.75biogenesis of lysosome-related organelles complex ... [more]
UPI00071C30913.360e-2057.50biogenesis of lysosome-related organelles complex ... [more]
UPI001B88B85F1.550e-1960.00biogenesis of lysosome-related organelles complex ... [more]
A0A6J2YA03_SITOR1.790e-1957.50biogenesis of lysosome-related organelles complex ... [more]
A0A210PV64_MIZYE4.370e-1953.75Biogenesis of lysosome-related organelles complex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105838contigF-distichus_contig105838:1221..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.5
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog10224.XP_006825385.1
Preferred nameBLOC1S2
KEGG koko:K16750
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000930,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006355,GO:0006357,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007020,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008022,GO:0008088,GO:0008089,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008625,GO:0008637,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010970,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016491,GO:0019219,GO:0019222,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030705,GO:0031082,GO:0031083,GO:0031109,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0032418,GO:0032438,GO:0032501,GO:0032502,GO:0032991,GO:0033059,GO:0033363,GO:0034622,GO:0035794,GO:0042127,GO:0042802,GO:0042803,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043473,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044450,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046785,GO:0046902,GO:0046907,GO:0046983,GO:0047496,GO:0048468,GO:0048489,GO:0048490,GO:0048518,GO:0048522,GO:0048666,GO:0048699,GO:0048731,GO:0048753,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051258,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055037,GO:0055114,GO:0060155,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0072384,GO:0080090,GO:0090559,GO:0097190,GO:0097191,GO:0097345,GO:0097435,GO:0097479,GO:0097480,GO:0097708,GO:0098930,GO:0099003,GO:0099078,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:0120036,GO:1902108,GO:1902110,GO:1902680,GO:1902686,GO:1903506,GO:1903508,GO:1905710,GO:2000112,GO:2001141
EggNOG free text desc.anterograde synaptic vesicle transport
EggNOG OGs39ZU6@33154,3BRS6@33208,3D6NW@33213,KOG4559@1,KOG4559@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04131
Exons1
Model size388
Cds size237
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.270343-UTR-F-distichus_contig105838:1220..13711622928984.270343-UTR-F-distichus_contig105838:1220..1371Fucus distichus monoicousUTRF-distichus_contig105838 1221..1371 +
1690885091.7455883-UTR-F-distichus_contig105838:1220..13711690885091.7455883-UTR-F-distichus_contig105838:1220..1371Fucus distichus monoicousUTRF-distichus_contig105838 1221..1371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.2908337-CDS-F-distichus_contig105838:1371..16081622928984.2908337-CDS-F-distichus_contig105838:1371..1608Fucus distichus monoicousCDSF-distichus_contig105838 1372..1608 +
1690885091.759878-CDS-F-distichus_contig105838:1371..16081690885091.759878-CDS-F-distichus_contig105838:1371..1608Fucus distichus monoicousCDSF-distichus_contig105838 1372..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105838.497.1prot_F-distichus_contig105838.497.1Fucus distichus monoicouspolypeptideF-distichus_contig105838 1372..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105838.497.1

>prot_F-distichus_contig105838.497.1 ID=prot_F-distichus_contig105838.497.1|Name=mRNA_F-distichus_contig105838.497.1|organism=Fucus distichus monoicous|type=polypeptide|length=79bp
MNWVTITKYSDMSQKTENVSQGVVEVNTKYSSLLPYLERIEQIDSSVARL
EQAAYKLDTFIFSKSLEQKFKILEKRSS*
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mRNA from alignment at F-distichus_contig105838:1221..1608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105838.497.1 ID=mRNA_F-distichus_contig105838.497.1|Name=mRNA_F-distichus_contig105838.497.1|organism=Fucus distichus monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at F-distichus_contig105838:1221..1608+ (Fucus distichus monoicous)
TCCCCCAAAAAAGGGCCAATTCTATCCACATCAACCTCTAGTTTTGAAGC
CCTGGACCCCCATGATCCCCAACTGAACAACCTTGCCTCCGTCATGTTCT
CCTCCACCTCCGACTGGATAGCCGGGGAGCTGGACACCACTGTTGGAGCA
AATGAACTGGGTCACCATTACCAAGTACAGTGACATGAGCCAGAAAACGG
AGAACGTGTCACAAGGTGTGGTGGAGGTGAACACCAAGTACAGCAGTCTC
CTCCCCTACCTGGAGCGGATAGAGCAGATAGACAGCAGCGTGGCCAGGCT
GGAGCAGGCTGCTTACAAGCTGGACACCTTCATATTCAGCAAGAGCTTGG
AGCAGAAGTTCAAAATTTTAGAGAAAAGATCCAGCTGA
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Coding sequence (CDS) from alignment at F-distichus_contig105838:1221..1608+

>mRNA_F-distichus_contig105838.497.1 ID=mRNA_F-distichus_contig105838.497.1|Name=mRNA_F-distichus_contig105838.497.1|organism=Fucus distichus monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at F-distichus_contig105838:1221..1608+ (Fucus distichus monoicous)
ATGAACTGGGTCACCATTACCAAGTACAGTGACATGAGCCAGAAAACGGA
GAACGTGTCACAAGGTGTGGTGGAGGTGAACACCAAGTACAGCAGTCTCC
TCCCCTACCTGGAGCGGATAGAGCAGATAGACAGCAGCGTGGCCAGGCTG
GAGCAGGCTGCTTACAAGCTGGACACCTTCATATTCAGCAAGAGCTTGGA
GCAGAAGTTCAAAATTTTAGAGAAAAGATCCAGCTGAATGAACTGGGTCA
CCATTACCAAGTACAGTGACATGAGCCAGAAAACGGAGAACGTGTCACAA
GGTGTGGTGGAGGTGAACACCAAGTACAGCAGTCTCCTCCCCTACCTGGA
GCGGATAGAGCAGATAGACAGCAGCGTGGCCAGGCTGGAGCAGGCTGCTT
ACAAGCTGGACACCTTCATATTCAGCAAGAGCTTGGAGCAGAAGTTCAAA
ATTTTAGAGAAAAGATCCAGCTGA
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