mRNA_F-distichus_contig105560.480.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105560.480.1
Unique NamemRNA_F-distichus_contig105560.480.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: D7FTG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 7.490e-36
Identity = 62/82 (75.61%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 RSVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            R++G+HPS+I+RLRHTATLRGH+ CVNRLCWND GT IASGSDDTTVCLFDAA+ KR +QF+TGH RNIL V+ LP TNDQ+
Sbjct:   84 RNLGQHPSMIQRLRHTATLRGHSGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQI 165          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A485LQN6_9STRA (Aste57867_24505 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQN6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.140e-16
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 RSVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            R +  H ++++RL   + L  H  CVNRLCWN +GT +ASGSDDT V L+D  T   +   ETGH+ NI GV  +P TND +
Sbjct:   27 RQLQAHAALVKRLVCDSVLNKHDGCVNRLCWNQSGTTLASGSDDTRVILWDYNTRTARHVIETGHSMNIFGVCFVPGTNDHI 108          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: M2XUM7_GALSU (WD and tetratricopeptide repeats protein 1 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XUM7_GALSU)

HSP 1 Score: 80.5 bits (197), Expect = 7.440e-16
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    4 SVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            ++  H S  ++L + ATL+GH+ CVNRL +N+ G+ + SGSDD  + ++D A    + Q ETGH RNI GVR +P TND++
Sbjct:   31 NILSHSSFFQKLENIATLKGHSGCVNRLSFNEEGSLLLSGSDDCRLLVWDVAEGTLRDQVETGHDRNIFGVRFIPCTNDRL 111          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A1V9Z7T1_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7T1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-15
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 RSVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            R +  H +++ RL   A L+ H  CVNRLCWN  GT +ASGSDDT V L+D    K +    TGH+ NI GV  +P TND +
Sbjct:  253 RLIQGHGALVRRLVCDAVLQTHDGCVNRLCWNQQGTILASGSDDTRVVLWDYQRRKPRHVITTGHSMNIFGVAFVPGTNDHI 334          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A2P6TIU3_CHLSO (WD and tetratricopeptide repeats 1-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIU3_CHLSO)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   31 ERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRK-LQFETGHTRNILGVRILPSTND 240
            +RL   A LRGH+ CVNRLCWN++G+ +ASGSDD  V L+    T+R+ L  ET H  NI GVR LP T D
Sbjct:   32 KRLSIEAVLRGHSGCVNRLCWNESGSLLASGSDDRKVMLWSYPDTQRQPLSIETEHQANIFGVRFLPQTGD 102          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A7S0E4J1_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E4J1_9CRYP)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   16 HPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTND 240
            H ++I++L     LRGH  CVNRLCWNDTGT +AS SDD    L+D       ++  TGH RNI GV  +P +ND
Sbjct:   29 HRALIDKLTLDQELRGHTGCVNRLCWNDTGTKLASVSDDCKCILWDV-NRHTHVEISTGHERNIFGVAFIPESND 102          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A024FVU5_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVU5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.860e-14
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   16 HPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            H + I+RL+    L GH  CVN LCWN TGT +ASGSDD  V +++  T KR    +T H  N+  V  +P TND V
Sbjct:   60 HQAFIQRLQCDNVLEGHLGCVNHLCWNQTGTLLASGSDDANVIVWNYQTKKRLEVIQTKHRLNVFAVCFVPGTNDHV 136          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: L1JDY1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JDY1_GUITC)

HSP 1 Score: 73.9 bits (180), Expect = 1.490e-13
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   16 HPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTND 240
            H S++++L     LRGHA CVNRLCWN+TGT +AS SDD    ++D       L+  T H RNI GV  +P  ND
Sbjct:   13 HKSLVDKLTLHKELRGHAGCVNRLCWNETGTKLASVSDDCKCIIWDVNRNSH-LEISTEHERNIFGVAFIPERND 86          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A2P6V1B7_9CHLO (WD and tetratricopeptide repeats 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1B7_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   22 SIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRK-LQFETGHTRNILGVRILPSTND 240
            S  +RL   A LRGH  CVNR+CWN++G+ +ASGSDD  V L+    T+R+ +  +T H  NI GVR LP T D
Sbjct:   30 SAAQRLSLEAVLRGHNGCVNRMCWNESGSLLASGSDDRKVLLWSYPDTQRQPIALQTEHQANIFGVRFLPQTGD 103          
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Match: A0A2D4CB75_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB75_PYTIN)

HSP 1 Score: 73.2 bits (178), Expect = 2.790e-13
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 SVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLFDAATTKRKLQFETGHTRNILGVRILPSTNDQV 246
            ++  H +++ RL   ATL  H  CVN L WN+ GT +ASGSDDT + L+D AT + +    TGH  NI  V  +P T D +
Sbjct:   54 TLQSHGALLRRLAVDATLESHRGCVNHLRWNEQGTLLASGSDDTRLILWDYATHRVRADIATGHVLNIFAVCFVPGTQDHI 134          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105560.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTG3_ECTSI7.490e-3675.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LQN6_9STRA2.140e-1647.56Aste57867_24505 protein n=1 Tax=Aphanomyces stella... [more]
M2XUM7_GALSU7.440e-1645.68WD and tetratricopeptide repeats protein 1 isoform... [more]
A0A1V9Z7T1_9STRA1.400e-1547.56Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2P6TIU3_CHLSO1.260e-1454.93WD and tetratricopeptide repeats 1-like n=1 Tax=Ch... [more]
A0A7S0E4J1_9CRYP2.300e-1449.33Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]
A0A024FVU5_9STRA5.860e-1446.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
L1JDY1_GUITC1.490e-1348.00Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A2P6V1B7_9CHLO1.500e-1350.00WD and tetratricopeptide repeats 1-like n=1 Tax=Mi... [more]
A0A2D4CB75_PYTIN2.790e-1343.21Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105560contigF-distichus_contig105560:1001..1597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue6.2e-30
Seed eggNOG ortholog2880.D7FTG3
Preferred nameWDTC1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11795,ko:K11804,ko:K11807,ko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0001101,GO:0001701,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006355,GO:0006357,GO:0006464,GO:0006629,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008361,GO:0009269,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0016043,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019318,GO:0019538,GO:0019725,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0035264,GO:0036211,GO:0040007,GO:0042221,GO:0042304,GO:0042393,GO:0042592,GO:0042826,GO:0043009,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043434,GO:0043687,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045892,GO:0045922,GO:0045934,GO:0046890,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0098772,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905952,GO:1905953,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.negative regulation of fatty acid biosynthetic process
EggNOG OGsKOG1310@2759,KOG1334@1
EC2.1.1.43
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.0228508-CDS-F-distichus_contig105560:1000..11761622928981.0228508-CDS-F-distichus_contig105560:1000..1176Fucus distichus monoicousCDSF-distichus_contig105560 1001..1176 -
1690885090.6083434-CDS-F-distichus_contig105560:1000..11761690885090.6083434-CDS-F-distichus_contig105560:1000..1176Fucus distichus monoicousCDSF-distichus_contig105560 1001..1176 -
1622928981.0347526-CDS-F-distichus_contig105560:1527..15971622928981.0347526-CDS-F-distichus_contig105560:1527..1597Fucus distichus monoicousCDSF-distichus_contig105560 1528..1597 -
1690885090.6206791-CDS-F-distichus_contig105560:1527..15971690885090.6206791-CDS-F-distichus_contig105560:1527..1597Fucus distichus monoicousCDSF-distichus_contig105560 1528..1597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105560.480.1prot_F-distichus_contig105560.480.1Fucus distichus monoicouspolypeptideF-distichus_contig105560 1001..1597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105560.480.1

>prot_F-distichus_contig105560.480.1 ID=prot_F-distichus_contig105560.480.1|Name=mRNA_F-distichus_contig105560.480.1|organism=Fucus distichus monoicous|type=polypeptide|length=82bp
RSVGEHPSIIERLRHTATLRGHAQCVNRLCWNDTGTAIASGSDDTTVCLF
DAATTKRKLQFETGHTRNILGVRILPSTNDQV
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mRNA from alignment at F-distichus_contig105560:1001..1597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105560.480.1 ID=mRNA_F-distichus_contig105560.480.1|Name=mRNA_F-distichus_contig105560.480.1|organism=Fucus distichus monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at F-distichus_contig105560:1001..1597- (Fucus distichus monoicous)
CGGAGCGTGGGCGAGCACCCGTCGATCATCGAGCGACTTCGGCACACGGC GACGCTGCGAGGACACGCCCGTAAGCGCAGCATCAGCACGGTGTAGTATA ATTGGGAGGGAATAACTTAATGACTGTGGTGAACTCTGCTGCGTATCCGG GCCTGGGCTGTCGGTTGTCATAGGATAGCGTTACCGCGCTATTGAAAGGA GGCGCGCATCATGAAGAAAAATCGCGCGGGCTGTATGTGTGTATTTTTAT GGAGGGGGAGGGGGAACATTCTCTCCTTTTTTTTAGTCGCGAAAACGAGT CCGTCATCAACACACTTTCAGAATATTATTCGGGGTATGGTTGGGGGGGG TGTTCTTTCCTTCTCTCCCCCTACCCCCCATCCCCTTTGTAACGCCTCCG TGAAAATGTTACTATTAATAGAGTGCGTCAACCGGTTGTGCTGGAACGAC ACGGGTACGGCGATCGCTTCGGGATCGGATGATACAACCGTTTGCCTCTT CGATGCCGCTACCACCAAGCGGAAGCTGCAGTTTGAGACGGGCCACACGC GGAACATATTGGGCGTCAGAATCCTGCCGTCCACAAACGATCAGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig105560:1001..1597-

>mRNA_F-distichus_contig105560.480.1 ID=mRNA_F-distichus_contig105560.480.1|Name=mRNA_F-distichus_contig105560.480.1|organism=Fucus distichus monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at F-distichus_contig105560:1001..1597- (Fucus distichus monoicous)
CGGAGCGTGGGCGAGCACCCGTCGATCATCGAGCGACTTCGGCACACGGC
GACGCTGCGAGGACACGCCCCGGAGCGTGGGCGAGCACCCGTCGATCATC
GAGCGACTTCGGCACACGGCGACGCTGCGAGGACACGCCCAGTGCGTCAA
CCGGTTGTGCTGGAACGACACGGGTACGGCGATCGCTTCGGGATCGGATG
ATACAACCGTTTGCCTCTTCGATGCCGCTACCACCAAGCGGAAGCTGCAG
TTTGAGACGGGCCACACGCGGAACATATTGGGCGTCAGAATCCTGCCGTC
CACAAACGATCAGGTGAGTGCGTCAACCGGTTGTGCTGGAACGACACGGG
TACGGCGATCGCTTCGGGATCGGATGATACAACCGTTTGCCTCTTCGATG
CCGCTACCACCAAGCGGAAGCTGCAGTTTGAGACGGGCCACACGCGGAAC
ATATTGGGCGTCAGAATCCTGCCGTCCACAAACGATCAGGTG
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