mRNA_F-distichus_contig104985.434.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104985.434.1
Unique NamemRNA_F-distichus_contig104985.434.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   10 RLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 126
            RLF      + TCS CGEGG LICCDYCPAS+HM+PCL+
Sbjct: 2958 RLFKG--VHEATCSICGEGGALICCDYCPASFHMEPCLD 2994
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-10
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   10 RLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 126
            RLF      + TCS CGEGG LICCDYCPAS+HM+PCL 
Sbjct: 2382 RLFKG--VHEATCSMCGEGGALICCDYCPASFHMEPCLE 2418
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: C5Y8P4_SORBI (Uncharacterized protein n=4 Tax=Andropogoneae TaxID=147429 RepID=C5Y8P4_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 8.870e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCL 123
            V+D +    D + +TC +CG+GG LICCD CPASYH Q CL
Sbjct:  960 VKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACL 999
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A1D6EAF6_MAIZE (Increased DNA methylation 1 n=14 Tax=Zea mays TaxID=4577 RepID=A0A1D6EAF6_MAIZE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 126
             +D +    D + +TC +CG+GG LICCD CPASYH Q CL+
Sbjct: 1016 AKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACLS 1056
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A1D6EAI0_MAIZE (Increased DNA methylation 1 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6EAI0_MAIZE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 126
             +D +    D + +TC +CG+GG LICCD CPASYH Q CL+
Sbjct: 1016 AKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACLS 1056
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q2WKY2_HAPBU (PHD-type domain-containing protein n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3Q2WKY2_HAPBU)

HSP 1 Score: 52.4 bits (124), Expect = 2.280e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 120
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A672ZD26_9TELE (PHD-type domain-containing protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZD26_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 2.450e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 120
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q3W7W0_MOLML (PHD-type domain-containing protein n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3W7W0_MOLML)

HSP 1 Score: 52.4 bits (124), Expect = 2.630e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 120
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83
[Close]
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3P9JLW7_ORYLA (PHD-type domain-containing protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9JLW7_ORYLA)

HSP 1 Score: 52.4 bits (124), Expect = 2.780e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 120
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83
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BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q1F9Z8_9TELE (PHD-type domain-containing protein n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1F9Z8_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 4.530e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 120
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.240e-1066.67Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE1.700e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
C5Y8P4_SORBI8.870e-856.10Uncharacterized protein n=4 Tax=Andropogoneae TaxI... [more]
A0A1D6EAF6_MAIZE1.660e-752.38Increased DNA methylation 1 n=14 Tax=Zea mays TaxI... [more]
A0A1D6EAI0_MAIZE1.660e-752.38Increased DNA methylation 1 n=3 Tax=Zea mays TaxID... [more]
A0A3Q2WKY2_HAPBU2.280e-750.00PHD-type domain-containing protein n=2 Tax=Pseudoc... [more]
A0A672ZD26_9TELE2.450e-750.00PHD-type domain-containing protein n=1 Tax=Sphaera... [more]
A0A3Q3W7W0_MOLML2.630e-750.00PHD-type domain-containing protein n=1 Tax=Mola mo... [more]
A0A3P9JLW7_ORYLA2.780e-750.00PHD-type domain-containing protein n=1 Tax=Oryzias... [more]
A0A3Q1F9Z8_9TELE4.530e-750.00PHD-type domain-containing protein n=1 Tax=Acantho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104985contigF-distichus_contig104985:1192..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.700541-CDS-F-distichus_contig104985:1191..13171622928970.700541-CDS-F-distichus_contig104985:1191..1317Fucus distichus monoicousCDSF-distichus_contig104985 1192..1317 -
1690885086.5735548-CDS-F-distichus_contig104985:1191..13171690885086.5735548-CDS-F-distichus_contig104985:1191..1317Fucus distichus monoicousCDSF-distichus_contig104985 1192..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104985.434.1prot_F-distichus_contig104985.434.1Fucus distichus monoicouspolypeptideF-distichus_contig104985 1192..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104985.434.1

>prot_F-distichus_contig104985.434.1 ID=prot_F-distichus_contig104985.434.1|Name=mRNA_F-distichus_contig104985.434.1|organism=Fucus distichus monoicous|type=polypeptide|length=42bp
VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN
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mRNA from alignment at F-distichus_contig104985:1192..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104985.434.1 ID=mRNA_F-distichus_contig104985.434.1|Name=mRNA_F-distichus_contig104985.434.1|organism=Fucus distichus monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at F-distichus_contig104985:1192..1317- (Fucus distichus monoicous)
GTTCGGGATCGTTTGTTTTCCTCCCCTGACGCGTCCCAGAACACGTGCTC
CACGTGTGGGGAGGGAGGCACGCTGATCTGCTGCGACTACTGCCCGGCAT
CGTACCACATGCAACCCTGCCTCAAC
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Coding sequence (CDS) from alignment at F-distichus_contig104985:1192..1317-

>mRNA_F-distichus_contig104985.434.1 ID=mRNA_F-distichus_contig104985.434.1|Name=mRNA_F-distichus_contig104985.434.1|organism=Fucus distichus monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at F-distichus_contig104985:1192..1317- (Fucus distichus monoicous)
GTTCGGGATCGTTTGTTTTCCTCCCCTGACGCGTCCCAGAACACGTGCTC
CACGTGTGGGGAGGGAGGCACGCTGATCTGCTGCGACTACTGCCCGGCAT
CGTACCACATGCAACCCTGCCTCAACGTTCGGGATCGTTTGTTTTCCTCC
CCTGACGCGTCCCAGAACACGTGCTCCACGTGTGGGGAGGGAGGCACGCT
GATCTGCTGCGACTACTGCCCGGCATCGTACCACATGCAACCCTGCCTCA
AC
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