prot_F-distichus_contig104985.434.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig104985.434.1
Unique Nameprot_F-distichus_contig104985.434.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length42
Homology
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0
Query:    4 RLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 42
            RLF      + TCS CGEGG LICCDYCPAS+HM+PCL+
Sbjct: 2958 RLFKG--VHEATCSICGEGGALICCDYCPASFHMEPCLD 2994          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-10
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    4 RLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 42
            RLF      + TCS CGEGG LICCDYCPAS+HM+PCL 
Sbjct: 2382 RLFKG--VHEATCSMCGEGGALICCDYCPASFHMEPCLE 2418          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: C5Y8P4_SORBI (Uncharacterized protein n=4 Tax=Andropogoneae TaxID=147429 RepID=C5Y8P4_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 8.870e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCL 41
            V+D +    D + +TC +CG+GG LICCD CPASYH Q CL
Sbjct:  960 VKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACL 999          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A1D6EAF6_MAIZE (Increased DNA methylation 1 n=14 Tax=Zea mays TaxID=4577 RepID=A0A1D6EAF6_MAIZE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 42
             +D +    D + +TC +CG+GG LICCD CPASYH Q CL+
Sbjct: 1016 AKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACLS 1056          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A1D6EAI0_MAIZE (Increased DNA methylation 1 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6EAI0_MAIZE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN 42
             +D +    D + +TC +CG+GG LICCD CPASYH Q CL+
Sbjct: 1016 AKDTMSLQADQNDDTCGSCGDGGELICCDNCPASYH-QACLS 1056          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q2WKY2_HAPBU (PHD-type domain-containing protein n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3Q2WKY2_HAPBU)

HSP 1 Score: 52.4 bits (124), Expect = 2.280e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 40
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A672ZD26_9TELE (PHD-type domain-containing protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZD26_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 2.450e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 40
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q3W7W0_MOLML (PHD-type domain-containing protein n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3W7W0_MOLML)

HSP 1 Score: 52.4 bits (124), Expect = 2.630e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 40
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3P9JLW7_ORYLA (PHD-type domain-containing protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9JLW7_ORYLA)

HSP 1 Score: 52.4 bits (124), Expect = 2.780e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 40
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83          
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Match: A0A3Q1F9Z8_9TELE (PHD-type domain-containing protein n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1F9Z8_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 4.530e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPC 40
            VRD   S    + +TC +C EGG L+CCD+CPA++H+Q C
Sbjct:   44 VRDVRRSGRATNHDTCDSCREGGDLLCCDHCPAAFHLQCC 83          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104985.434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.240e-1066.67Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE1.700e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
C5Y8P4_SORBI8.870e-856.10Uncharacterized protein n=4 Tax=Andropogoneae TaxI... [more]
A0A1D6EAF6_MAIZE1.660e-752.38Increased DNA methylation 1 n=14 Tax=Zea mays TaxI... [more]
A0A1D6EAI0_MAIZE1.660e-752.38Increased DNA methylation 1 n=3 Tax=Zea mays TaxID... [more]
A0A3Q2WKY2_HAPBU2.280e-750.00PHD-type domain-containing protein n=2 Tax=Pseudoc... [more]
A0A672ZD26_9TELE2.450e-750.00PHD-type domain-containing protein n=1 Tax=Sphaera... [more]
A0A3Q3W7W0_MOLML2.630e-750.00PHD-type domain-containing protein n=1 Tax=Mola mo... [more]
A0A3P9JLW7_ORYLA2.780e-750.00PHD-type domain-containing protein n=1 Tax=Oryzias... [more]
A0A3Q1F9Z8_9TELE4.530e-750.00PHD-type domain-containing protein n=1 Tax=Acantho... [more]

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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 5..42
e-value: 1.3E-9
score: 39.7
IPR042163PHD finger protein 12PANTHERPTHR46309FAMILY NOT NAMEDcoord: 9..41
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 7..37

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 5..42
e-value: 1.3E-9
score: 39.7
IPR042163PHD finger protein 12PANTHERPTHR46309FAMILY NOT NAMEDcoord: 9..41
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 7..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104985contigF-distichus_contig104985:1192..1317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104985.434.1mRNA_F-distichus_contig104985.434.1Fucus distichus monoicousmRNAF-distichus_contig104985 1192..1317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig104985.434.1 ID=prot_F-distichus_contig104985.434.1|Name=mRNA_F-distichus_contig104985.434.1|organism=Fucus distichus monoicous|type=polypeptide|length=42bp
VRDRLFSSPDASQNTCSTCGEGGTLICCDYCPASYHMQPCLN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR042163PHF12
IPR011011Znf_FYVE_PHD