mRNA_F-distichus_contig104713.418.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104713.418.1
Unique NamemRNA_F-distichus_contig104713.418.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.710e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTSSEAR 147
            VSTVEASLRLDSVASAGMGMSRSKMS AIKSG VLVNWK  +S ++  R
Sbjct:   76 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTTNVR 124          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.560e-11
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWK 117
            VSTVEASLRLDSVASAGMGMSRSKMS AIKSG VLVNWK
Sbjct:  245 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWK 283          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: B7KD11_GLOC7 (Photosystem II S4 domain protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KD11_GLOC7)

HSP 1 Score: 62.4 bits (150), Expect = 2.690e-10
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTS 135
            ++TVEAS+RLD++ASAG GMSRSKM+EAI SG V VNWK +TSTS
Sbjct:  177 MTTVEASMRLDAIASAGFGMSRSKMAEAISSGDVRVNWKEITSTS 221          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: K9PWE0_9CYAN (Photosystem II S4 domain protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=K9PWE0_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 2.710e-10
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTS 135
            ++TVEASLRLD++ASAG+GMSRSKM++AI  G V VNWKT+T TS
Sbjct:  178 LTTVEASLRLDAIASAGLGMSRSKMADAISKGNVKVNWKTITQTS 222          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: A0A836CE46_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE46_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.640e-10
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTSSEAR 147
            V++VEASLRLD++ASAGMGMSRSKM++AIKSG V VNW+     SSE +
Sbjct:  189 VTSVEASLRLDAIASAGMGMSRSKMADAIKSGMVFVNWREAKGPSSEVK 237          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: A0A6P0XXH7_9CYAN (Photosystem II S4 domain protein n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XXH7_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 7.190e-10
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTS 135
            ++TVEAS+RLD++ASAG+GMSRSKM+EAI SG V VNWK VT  S
Sbjct:  177 ITTVEASMRLDAIASAGLGMSRSKMAEAINSGDVRVNWKAVTQAS 221          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: B1XMP5_SYNP2 (S4 domain protein n=10 Tax=Synechococcus TaxID=1129 RepID=B1XMP5_SYNP2)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTS 135
            ++TVEASLRLD++ SAG+GMSR+KM+EAI SG V VNWKT+T +S
Sbjct:  171 LTTVEASLRLDAIGSAGLGMSRTKMAEAIASGNVRVNWKTITQSS 215          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: A0A7S3UWV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV6_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 1.570e-9
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTSSEAR 147
            V +VEASLR D+V SAGMG+SRSKM++ IKSG VL+NWK ++ST  E +
Sbjct:   98 VQSVEASLRADAVISAGMGVSRSKMADMIKSGDVLINWKEISSTKKEVK 146          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: UPI001BDD68C1 (photosystem II S4 domain protein n=1 Tax=Synechococcus sp. LA31 TaxID=2741953 RepID=UPI001BDD68C1)

HSP 1 Score: 59.7 bits (143), Expect = 2.730e-9
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTSSE 141
            +++VEASLRLD+VASAGMGMSRS+MS+ I+SG V VNW+ +TS S E
Sbjct:  182 LNSVEASLRLDAVASAGMGMSRSRMSDLIRSGAVRVNWQVITSPSRE 228          
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Match: A0A2T1EPK3_9CYAN (Photosystem II S4 domain protein n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2T1EPK3_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.690e-9
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTS 135
            ++TVEASLRLD++ASAG GMSRSKM+E I SG V VNWK +TS S
Sbjct:  177 LTTVEASLRLDAIASAGFGMSRSKMAELINSGDVRVNWKEITSAS 221          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104713.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH66_ECTSI5.710e-1379.59RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J7Q1_9PHAE1.560e-1194.87S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
B7KD11_GLOC72.690e-1073.33Photosystem II S4 domain protein n=1 Tax=Gloeothec... [more]
K9PWE0_9CYAN2.710e-1071.11Photosystem II S4 domain protein n=2 Tax=Pseudanab... [more]
A0A836CE46_9STRA5.640e-1067.35S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6P0XXH7_9CYAN7.190e-1071.11Photosystem II S4 domain protein n=1 Tax=Okeania s... [more]
B1XMP5_SYNP21.320e-968.89S4 domain protein n=10 Tax=Synechococcus TaxID=112... [more]
A0A7S3UWV6_HETAK1.570e-963.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001BDD68C12.730e-968.09photosystem II S4 domain protein n=1 Tax=Synechoco... [more]
A0A2T1EPK3_9CYAN3.690e-971.11Photosystem II S4 domain protein n=2 Tax=Cyanobact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104713contigF-distichus_contig104713:1734..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue9.5e-10
Seed eggNOG ortholog2880.D7FH66
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.isoleucyl-tRNA aminoacylation
EggNOG OGsCOG2302@1,KOG4837@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928968.9829648-CDS-F-distichus_contig104713:1733..18801622928968.9829648-CDS-F-distichus_contig104713:1733..1880Fucus distichus monoicousCDSF-distichus_contig104713 1734..1880 +
1690885085.8026025-CDS-F-distichus_contig104713:1733..18801690885085.8026025-CDS-F-distichus_contig104713:1733..1880Fucus distichus monoicousCDSF-distichus_contig104713 1734..1880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104713.418.1prot_F-distichus_contig104713.418.1Fucus distichus monoicouspolypeptideF-distichus_contig104713 1734..1880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104713.418.1

>prot_F-distichus_contig104713.418.1 ID=prot_F-distichus_contig104713.418.1|Name=mRNA_F-distichus_contig104713.418.1|organism=Fucus distichus monoicous|type=polypeptide|length=49bp
VSTVEASLRLDSVASAGMGMSRSKMSEAIKSGTVLVNWKTVTSTSSEAR
back to top

mRNA from alignment at F-distichus_contig104713:1734..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104713.418.1 ID=mRNA_F-distichus_contig104713.418.1|Name=mRNA_F-distichus_contig104713.418.1|organism=Fucus distichus monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at F-distichus_contig104713:1734..1880+ (Fucus distichus monoicous)
GTCAGCACGGTGGAAGCTTCGCTGCGCCTCGACTCTGTGGCCAGCGCAGG CATGGGGATGAGCCGCAGCAAGATGTCGGAAGCGATCAAGAGTGGTACCG TGTTAGTGAACTGGAAGACCGTTACATCGACATCCTCCGAGGCGAGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig104713:1734..1880+

>mRNA_F-distichus_contig104713.418.1 ID=mRNA_F-distichus_contig104713.418.1|Name=mRNA_F-distichus_contig104713.418.1|organism=Fucus distichus monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at F-distichus_contig104713:1734..1880+ (Fucus distichus monoicous)
GTCAGCACGGTGGAAGCTTCGCTGCGCCTCGACTCTGTGGCCAGCGCAGG
CATGGGGATGAGCCGCAGCAAGATGTCGGAAGCGATCAAGAGTGGTACCG
TGTTAGTGAACTGGAAGACCGTTACATCGACATCCTCCGAGGCGAGAGTC
AGCACGGTGGAAGCTTCGCTGCGCCTCGACTCTGTGGCCAGCGCAGGCAT
GGGGATGAGCCGCAGCAAGATGTCGGAAGCGATCAAGAGTGGTACCGTGT
TAGTGAACTGGAAGACCGTTACATCGACATCCTCCGAGGCGAGA
back to top