mRNA_F-distichus_contig104.354.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104.354.1
Unique NamemRNA_F-distichus_contig104.354.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104.354.1 vs. uniprot
Match: A0A6H5K8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.150e-44
Identity = 78/120 (65.00%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:  208 AATTAVGPRVSPSSRRDILRWIDRLGLKVDWSVLTPEDAPCHESLSNGLLFCELAAAIDYVASGGRGLPLSEMPSCPGRFVLRGTCSTPPNAARSRHNVRTALSAFDSLGGVSGVWLHDE 567
            A  T  G R   + RRDILRW+DRLG+KVDWS+L  E   CH   S+G + CELAAA+DY ASGGRGLPLSE+PSCPGRFVL+GTC  P NAAR++HNVR+ALSAF +LGG+ G WL  E
Sbjct:  427 AGITEAGKR--RAGRRDILRWMDRLGVKVDWSLLAGEGPRCHHRFSSGEVLCELAAAVDYAASGGRGLPLSEIPSCPGRFVLKGTCGAPANAARAKHNVRSALSAFAALGGIGGTWLRGE 544
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8B2_9PHAE1.150e-4465.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104contigF-distichus_contig104:12360..14306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104.354.1prot_F-distichus_contig104.354.1Fucus distichus monoicouspolypeptideF-distichus_contig104 12362..14306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.3188155-CDS-F-distichus_contig104:12361..125311622928959.3188155-CDS-F-distichus_contig104:12361..12531Fucus distichus monoicousCDSF-distichus_contig104 12362..12531 -
1690885082.454804-CDS-F-distichus_contig104:12361..125311690885082.454804-CDS-F-distichus_contig104:12361..12531Fucus distichus monoicousCDSF-distichus_contig104 12362..12531 -
1622928959.337985-CDS-F-distichus_contig104:13065..131711622928959.337985-CDS-F-distichus_contig104:13065..13171Fucus distichus monoicousCDSF-distichus_contig104 13066..13171 -
1690885082.466499-CDS-F-distichus_contig104:13065..131711690885082.466499-CDS-F-distichus_contig104:13065..13171Fucus distichus monoicousCDSF-distichus_contig104 13066..13171 -
1622928959.3560245-CDS-F-distichus_contig104:14015..143061622928959.3560245-CDS-F-distichus_contig104:14015..14306Fucus distichus monoicousCDSF-distichus_contig104 14016..14306 -
1690885082.4792242-CDS-F-distichus_contig104:14015..143061690885082.4792242-CDS-F-distichus_contig104:14015..14306Fucus distichus monoicousCDSF-distichus_contig104 14016..14306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104.354.1

>prot_F-distichus_contig104.354.1 ID=prot_F-distichus_contig104.354.1|Name=mRNA_F-distichus_contig104.354.1|organism=Fucus distichus monoicous|type=polypeptide|length=189bp
TKEKVVDKNVGFCRHRERAAAGETLGAVRGSSVTAARSTGTSGTAILVPR
EASRNRGCWKPVPSDGVVGAATTAVGPRVSPSSRRDILRWIDRLGLKVDW
SVLTPEDAPCHESLSNGLLFCELAAAIDYVASGGRGLPLSEMPSCPGRFV
LRGTCSTPPNAARSRHNVRTALSAFDSLGGVSGVWLHDE
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mRNA from alignment at F-distichus_contig104:12360..14306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104.354.1 ID=mRNA_F-distichus_contig104.354.1|Name=mRNA_F-distichus_contig104.354.1|organism=Fucus distichus monoicous|type=mRNA|length=1947bp|location=Sequence derived from alignment at F-distichus_contig104:12360..14306- (Fucus distichus monoicous)
ACTAAAGAGAAGGTGGTTGACAAAAACGTTGGGTTTTGTCGCCACAGAGA
GAGGGCGGCGGCTGGAGAAACGCTAGGAGCGGTACGTGGGTCGTCAGTGA
CGGCTGCGCGATCGACCGGGACTTCGGGGACAGCAATATTGGTCCCCAGA
GAGGCCAGTCGGAATAGGGGCTGCTGGAAGCCGGTACCGTCTGATGGCGT
GGTCGGCGCAGCAACGACGGCGGTGGGGCCAAGAGTGTCACCGTCAAGCC
GGAGGGACATCCTACGATGGATAGATCGCCTCGGATTGAAGGTGATACTA
TTCGGCCCCTTCATTCATTTCTAGGAGGGGAAGTTGGTGGTAGAATAATC
TGCACCAAATTTGAGGGGGGAGAGGTTATCAAGCAGTTCCTCGAGAGGAG
TAATTTGCTAGATCCGTCCCTAAAGCAGATTGCTTTCGGGAAATAGAAGT
GTGTTGTGGTCGGTAAAAAGGAATCAGATGGATTAAAGTAGCCCTATCCT
CAGGGAAAGTCTCCCTTAAAAACGTTGTCGAATAACTCTGCTCGTGTAAA
CTGAATTCGTGCACGAGAGAAACTGTTAAGCATTTGGGGTACCCATTTCA
CGTGTTGTGTGTGTGTTAACGCTGTTTTCTTCCTACTAACCGATCGGGCC
TCAACCATACCCAGCAATATACGTGGTTGCCAATCCGGTTCGTGGTCTGC
CGGACGGGAAAAGATCAGAGGGACGTGTACAAAGCTCCGACGAGAGCATG
AAAATAATAAAACAAAGCAAAATACGACAAAAAGAAAGGAACAACAACAC
ATAGCACATTCCAGAAAAGGATTATCCATCGGTGTCGAAAGGTTTCTGTG
GGGCTTTTGTACCCGTCCCGGGAGGACGCGTGCAACTTCTCTAAATATAA
TACTACTTAGTAAGGCTAAGCTTTCTTATGTCAAAACAGTTTTGTTTCGA
CGGGGTGGGCGCTCTTATGGGTCTATGAGATTGGCCACCAGGGCTCCCAT
CACGTCTAGCTCAATAGATCTCGTTCATTCGTTTTGTCCTCTCTATCGTC
TGGGGTCCGACATGAACGACACAGTAAAACCACTTGATTGAGTGATGGTC
CTAGCGAGCGCATCCATTCGAATTTGTCTCGCCAGGTAGACTGGTCCGTG
TTAACGCCTGAAGACGCCCCATGTCACGAGAGTTTGTCAAACGGCCTGCT
TTTTTGCGAGCTGGCGGCCGCGATCGACTACGTCGCTTCAGGTGCGGGTA
ATCCCTGTCCGCAGTGTGGATATTCTTCGGGTGTTGTCAGACAACTCGTT
GCTTCGCATAGCAGGTGTTGGCTCCAAACTACTACTTTTTGGCGCATCCG
GGCATATCACACCGACTAGTACTACCTCTGCAGATTTCGACCAGATTTTG
GTATTCTCGTGTTTGAGCGTTTGAACTGTAGGCTCGAAGCGGGCGGCGAG
AGGGGGATCTATCCCCAGTTTAGGGGAACAATCGTGTACCAGGGCCTTAC
CTCTATCAAAATGGTTTTATGAATTCCCTGGTGGGATGCAGCGAGTTCGG
CGTGCTCTAACCTTTTAAGGGCGAGTTAGAGGAGTGAGCCTCCCCTGTAG
AGTTTAGTCGGATATGTCCGCCCCCATCAACACGGGGATGGATTCGTCAA
ATCCCCCCCTCCAGCCCCATCGTCGCTGGACCTTTTGTTTCTCCTGCTAC
CCAGACCAAAGTCCGTCGTCTCTTGATACCACCTCGCGTTAACCCCTCAC
ATTCCTTGCCTCCTCACCGACAAAGGTGGTCGGGGACTGCCGTTGTCGGA
GATGCCCTCCTGCCCCGGGCGTTTCGTCCTCCGTGGGACGTGCAGTACGC
CGCCAAACGCTGCGCGCTCTAGGCACAACGTTCGGACGGCCCTAAGTGCT
TTCGATTCCCTCGGCGGCGTCTCGGGCGTATGGTTGCACGACGAGCA
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Coding sequence (CDS) from alignment at F-distichus_contig104:12360..14306-

>mRNA_F-distichus_contig104.354.1 ID=mRNA_F-distichus_contig104.354.1|Name=mRNA_F-distichus_contig104.354.1|organism=Fucus distichus monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at F-distichus_contig104:12360..14306- (Fucus distichus monoicous)
ACTAAAGAGAAGGTGGTTGACAAAAACGTTGGGTTTTGTCGCCACAGAGA
GAGGGCGGCGGCTGGAGAAACGCTAGGAGCGGTACGTGGGTCGTCAGTGA
CGGCTGCGCGATCGACCGGGACTTCGGGGACAGCAATATTGGTCCCCAGA
GAGGCCAGTCGGAATAGGGGCTGCTGGAAGCCGGTACCGTCTGATGGCGT
GGTCGGCGCAGCAACGACGGCGGTGGGGCCAAGAGTGTCACCGTCAAGCC
GGAGGGACATCCTACGATGGATAGATCGCCTCGGATTGAAGACTAAAGAG
AAGGTGGTTGACAAAAACGTTGGGTTTTGTCGCCACAGAGAGAGGGCGGC
GGCTGGAGAAACGCTAGGAGCGGTACGTGGGTCGTCAGTGACGGCTGCGC
GATCGACCGGGACTTCGGGGACAGCAATATTGGTCCCCAGAGAGGCCAGT
CGGAATAGGGGCTGCTGGAAGCCGGTACCGTCTGATGGCGTGGTCGGCGC
AGCAACGACGGCGGTGGGGCCAAGAGTGTCACCGTCAAGCCGGAGGGACA
TCCTACGATGGATAGATCGCCTCGGATTGAAGGTAGACTGGTCCGTGTTA
ACGCCTGAAGACGCCCCATGTCACGAGAGTTTGTCAAACGGCCTGCTTTT
TTGCGAGCTGGCGGCCGCGATCGACTACGTCGCTTCAGGTAGACTGGTCC
GTGTTAACGCCTGAAGACGCCCCATGTCACGAGAGTTTGTCAAACGGCCT
GCTTTTTTGCGAGCTGGCGGCCGCGATCGACTACGTCGCTTCAGGTGGTC
GGGGACTGCCGTTGTCGGAGATGCCCTCCTGCCCCGGGCGTTTCGTCCTC
CGTGGGACGTGCAGTACGCCGCCAAACGCTGCGCGCTCTAGGCACAACGT
TCGGACGGCCCTAAGTGCTTTCGATTCCCTCGGCGGCGTCTCGGGCGTAT
GGTTGCACGACGAGGTGGTCGGGGACTGCCGTTGTCGGAGATGCCCTCCT
GCCCCGGGCGTTTCGTCCTCCGTGGGACGTGCAGTACGCCGCCAAACGCT
GCGCGCTCTAGGCACAACGTTCGGACGGCCCTAAGTGCTTTCGATTCCCT
CGGCGGCGTCTCGGGCGTATGGTTGCACGACGAG
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