mRNA_F-distichus_contig102490.209.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102490.209.1
Unique NamemRNA_F-distichus_contig102490.209.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102490.209.1 vs. uniprot
Match: D7G1Z2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-14
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 KIAEPNNGQLRLMVQYCERKLDTVASKTMLNASAKLLRQVRPETGKRFEEEMREERERMRKLKAAHAGANAKA*DTSSRGL 243
            +I++ N GQLRL+V Y E+K+  + + T+L+A  KLLR+   E  KR EEE+  ERER+++LKAAHAG NAKA DTS   L
Sbjct:   28 RISQLNAGQLRLLVSYVEKKVPGLTNPTVLDAYTKLLRKATAEREKRHEEEVHGERERLKQLKAAHAGVNAKAWDTSHASL 108
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BLAST of mRNA_F-distichus_contig102490.209.1 vs. uniprot
Match: A0A6H5LC81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC81_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.620e-13
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 KIAEPNNGQLRLMVQYCERKLDTVASKTMLNASAKLLRQVRPETGKRFEEEMREERERMRKLKAAHAGANAKA*DTSSRGL 243
            +I++ N GQLRL++ + E K+  + + T+L+A  KLLR+   E  KR EEE+  ERER+++LKAAHAG NAKA DTS   L
Sbjct:   28 RISQLNAGQLRLLISFVENKVPGLTNPTVLDAYTKLLRKATVEREKRHEEEVHGERERLKQLKAAHAGVNAKAWDTSHASL 108
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102490.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Z2_ECTSI3.050e-1453.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LC81_9PHAE3.620e-1350.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102490contigF-distichus_contig102490:208..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003610.1
Exons2
Model size320
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102490.209.1prot_F-distichus_contig102490.209.1Fucus distichus monoicouspolypeptideF-distichus_contig102490 306..775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.4208283-UTR-F-distichus_contig102490:207..3051622928941.4208283-UTR-F-distichus_contig102490:207..305Fucus distichus monoicousUTRF-distichus_contig102490 208..305 -
1690885075.2959902-UTR-F-distichus_contig102490:207..3051690885075.2959902-UTR-F-distichus_contig102490:207..305Fucus distichus monoicousUTRF-distichus_contig102490 208..305 -
1622928941.4616253-UTR-F-distichus_contig102490:775..8111622928941.4616253-UTR-F-distichus_contig102490:775..811Fucus distichus monoicousUTRF-distichus_contig102490 776..811 -
1690885075.3299916-UTR-F-distichus_contig102490:775..8111690885075.3299916-UTR-F-distichus_contig102490:775..811Fucus distichus monoicousUTRF-distichus_contig102490 776..811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.4324012-CDS-F-distichus_contig102490:305..3741622928941.4324012-CDS-F-distichus_contig102490:305..374Fucus distichus monoicousCDSF-distichus_contig102490 306..374 -
1690885075.3064635-CDS-F-distichus_contig102490:305..3741690885075.3064635-CDS-F-distichus_contig102490:305..374Fucus distichus monoicousCDSF-distichus_contig102490 306..374 -
1622928941.44486-CDS-F-distichus_contig102490:658..7751622928941.44486-CDS-F-distichus_contig102490:658..775Fucus distichus monoicousCDSF-distichus_contig102490 659..775 -
1690885075.3178267-CDS-F-distichus_contig102490:658..7751690885075.3178267-CDS-F-distichus_contig102490:658..775Fucus distichus monoicousCDSF-distichus_contig102490 659..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102490.209.1

>prot_F-distichus_contig102490.209.1 ID=prot_F-distichus_contig102490.209.1|Name=mRNA_F-distichus_contig102490.209.1|organism=Fucus distichus monoicous|type=polypeptide|length=62bp
MVQYCERKLDTVASKTMLNASAKLLRQVRPETGKRFEEEMREERERMRKL
KAAHAGANAKA*
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mRNA from alignment at F-distichus_contig102490:208..811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102490.209.1 ID=mRNA_F-distichus_contig102490.209.1|Name=mRNA_F-distichus_contig102490.209.1|organism=Fucus distichus monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at F-distichus_contig102490:208..811- (Fucus distichus monoicous)
AAGATCGCAGAGCCTAACAACGGCCAGCTGCGACTGATGGTGCAGTACTG
CGAAAGGAAACTGGACACGGTTGCCAGCAAGACCATGCTCAATGCCTCCG
CCAAGCTTCTCCGGCAGGTAAGGCCAGAGACTGGGAAGCGTTTCGAGGAA
GAGGTGATGGGCGGGAAACCCTCTCGCGCACGGAAGTGCCTAAGCCTGAT
TTTATAATCGCCGTTTTGGGTTCGATGCAGGTGGAGGGAGGTTGACGGTC
GGTCCGACTGTCCTCACAAAAAACGCGACCCCAAATGTACGCGAGGATGG
ATCGGCTCCACACCATCATCAGTCAGCCCGTGGTTGCGCGCCAAGGCTAA
CATACTCTGGCGGTCCCTTCGCTAACACCCTCTCGACGCATGCTTTTCTA
AGTCCGCGATTCGAATGGTTTCGGTTTCGACTATTAGATGCGCGAGGAAC
GCGAGAGAATGCGAAAGCTCAAGGCCGCGCACGCCGGCGCAAACGCGAAA
GCGTGAGATACAAGCTCACGCGGGCTTGGACAGAGAGCTGGTCAAGTTCC
AGAAGTTTTCTCGAGTCTAAGGCTCTCCGCATCGCCGAGGAAGAAGTCCT
CAAG
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Coding sequence (CDS) from alignment at F-distichus_contig102490:208..811-

>mRNA_F-distichus_contig102490.209.1 ID=mRNA_F-distichus_contig102490.209.1|Name=mRNA_F-distichus_contig102490.209.1|organism=Fucus distichus monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at F-distichus_contig102490:208..811- (Fucus distichus monoicous)
ATGGTGCAGTACTGCGAAAGGAAACTGGACACGGTTGCCAGCAAGACCAT
GCTCAATGCCTCCGCCAAGCTTCTCCGGCAGGTAAGGCCAGAGACTGGGA
AGCGTTTCGAGGAAGAGATGGTGCAGTACTGCGAAAGGAAACTGGACACG
GTTGCCAGCAAGACCATGCTCAATGCCTCCGCCAAGCTTCTCCGGCAGGT
AAGGCCAGAGACTGGGAAGCGTTTCGAGGAAGAGATGCGCGAGGAACGCG
AGAGAATGCGAAAGCTCAAGGCCGCGCACGCCGGCGCAAACGCGAAAGCG
TGAATGCGCGAGGAACGCGAGAGAATGCGAAAGCTCAAGGCCGCGCACGC
CGGCGCAAACGCGAAAGCGTGA
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