prot_F-distichus_contig98661.19301.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig98661.19301.1
Unique Nameprot_F-distichus_contig98661.19301.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length46
Homology
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-13
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    2 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRY 42
            ILRGDKVHVVNG H G+ G+VQAVIRKQNR+IVEGVN+ +Y
Sbjct:   39 ILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKY 79          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A0K9QFZ8_SPIOL (KOW domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QFZ8_SPIOL)

HSP 1 Score: 57.8 bits (138), Expect = 4.380e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQL 46
            +ILRGD V ++ G  KG+ G V+ V+R QNRVIVEG NLVR+F+ L
Sbjct:   14 KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVRFFLSL 59          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: U2DVG9_9MOLU (50S ribosomal protein L24 n=1 Tax=Haloplasma contractile SSD-17B TaxID=1033810 RepID=U2DVG9_9MOLU)

HSP 1 Score: 55.8 bits (133), Expect = 9.680e-9
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    2 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVR 41
            + +GDKV V++G +KGK GVVQ V+RKQN+V+VEG+N V+
Sbjct:    3 VKKGDKVQVISGKYKGKQGVVQQVLRKQNKVVVEGINTVK 42          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A7S1C4Y4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4Y4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-8
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVR 41
            +I+RGD V VV+G  +GK GVV+ V+RKQNR++VEGVN+VR
Sbjct:   30 RIVRGDTVEVVSGRDRGKQGVVKRVLRKQNRIVVEGVNMVR 70          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: F0XVF8_AURAN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF8_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.530e-8
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    2 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNL 39
            I+RGDKV VVNG H+G++GVVQ V+R+ NR+IVEGVN+
Sbjct:    3 IVRGDKVVVVNGRHRGQSGVVQHVLRQSNRLIVEGVNV 40          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A5D6Y0X1_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0X1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.080e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0
Query:    2 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLV 40
            I+RGD V VVNG HKGK G V  VIR QNRVIVE +N+V
Sbjct:   28 IVRGDLVEVVNGPHKGKQGAVVGVIRDQNRVIVENINMV 66          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A7J8PQN9_GOSRA (KOW domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PQN9_GOSRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.170e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 45
            +ILRGD V ++ G  KG+ G+++ V+R QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMIIRGKDKGETGIIKRVVRSQNRVIVEGKNLVKKHIK 58          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A453HR24_AEGTS (KOW domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HR24_AEGTS)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-7
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 45
            +ILRGD V ++ G  KG++G+++ VIR QNRVIVEG NLV+  I+
Sbjct:   17 KILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIK 61          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A6P5GCE2_ANACO (uncharacterized protein LOC109720357 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GCE2_ANACO)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 45
            +ILRGD V ++ G  KG+ G+++ VIR QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIK 58          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: UPI0007EF38A1 (50S ribosomal protein L24-like isoform X2 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF38A1)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-7
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 45
            +ILRGD V V+ G  KG+ GVV+ VIR QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMVMRGKDKGETGVVKRVIRSQNRVIVEGKNLVKKHIK 58          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ79_ECTSI2.800e-1378.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0K9QFZ8_SPIOL4.380e-1058.70KOW domain-containing protein n=1 Tax=Spinacia ole... [more]
U2DVG9_9MOLU9.680e-960.0050S ribosomal protein L24 n=1 Tax=Haloplasma contr... [more]
A0A7S1C4Y4_9STRA1.360e-863.4150S ribosomal protein L24, chloroplastic n=1 Tax=B... [more]
F0XVF8_AURAN1.530e-868.4250S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A5D6Y0X1_9STRA7.080e-869.2350S ribosomal protein L24, chloroplastic n=1 Tax=P... [more]
A0A7J8PQN9_GOSRA1.170e-753.33KOW domain-containing protein n=1 Tax=Gossypium ra... [more]
A0A453HR24_AEGTS1.230e-755.56KOW domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A6P5GCE2_ANACO1.640e-755.56uncharacterized protein LOC109720357 n=1 Tax=Anana... [more]
UPI0007EF38A11.870e-762.2250S ribosomal protein L24-like isoform X2 n=1 Tax=... [more]

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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWPFAMPF00467KOWcoord: 4..35
e-value: 3.5E-5
score: 23.6
NoneNo IPR availableGENE3D2.30.30.1090coord: 1..45
e-value: 8.7E-12
score: 47.0
NoneNo IPR availablePANTHERPTHR12903:SF039S RIBOSOMAL PROTEIN L24, MITOCHONDRIALcoord: 2..44
IPR003256Ribosomal protein L24PANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 2..44
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 5..22
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 2..43

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWPFAMPF00467KOWcoord: 4..35
e-value: 3.5E-5
score: 23.6
NoneNo IPR availableGENE3D2.30.30.1090coord: 1..45
e-value: 8.7E-12
score: 47.0
NoneNo IPR availablePANTHERPTHR12903:SF039S RIBOSOMAL PROTEIN L24, MITOCHONDRIALcoord: 2..44
IPR003256Ribosomal protein L24PANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 2..44
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 5..22
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 2..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98661contigF-distichus_contig98661:1315..1452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98661.19301.1mRNA_F-distichus_contig98661.19301.1Fucus distichus monoicousmRNAF-distichus_contig98661 1315..1452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig98661.19301.1 ID=prot_F-distichus_contig98661.19301.1|Name=mRNA_F-distichus_contig98661.19301.1|organism=Fucus distichus monoicous|type=polypeptide|length=46bp
QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR003256Ribosomal_L24
IPR005825Ribosomal_L24/26_CS
IPR008991Translation_prot_SH3-like_sf