mRNA_F-distichus_contig98661.19301.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98661.19301.1
Unique NamemRNA_F-distichus_contig98661.19301.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-13
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    4 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRY 126
            ILRGDKVHVVNG H G+ G+VQAVIRKQNR+IVEGVN+ +Y
Sbjct:   39 ILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKY 79          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A0K9QFZ8_SPIOL (KOW domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QFZ8_SPIOL)

HSP 1 Score: 57.8 bits (138), Expect = 4.380e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQL 138
            +ILRGD V ++ G  KG+ G V+ V+R QNRVIVEG NLVR+F+ L
Sbjct:   14 KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVRFFLSL 59          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: U2DVG9_9MOLU (50S ribosomal protein L24 n=1 Tax=Haloplasma contractile SSD-17B TaxID=1033810 RepID=U2DVG9_9MOLU)

HSP 1 Score: 55.8 bits (133), Expect = 9.680e-9
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    4 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVR 123
            + +GDKV V++G +KGK GVVQ V+RKQN+V+VEG+N V+
Sbjct:    3 VKKGDKVQVISGKYKGKQGVVQQVLRKQNKVVVEGINTVK 42          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A7S1C4Y4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4Y4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-8
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVR 123
            +I+RGD V VV+G  +GK GVV+ V+RKQNR++VEGVN+VR
Sbjct:   30 RIVRGDTVEVVSGRDRGKQGVVKRVLRKQNRIVVEGVNMVR 70          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: F0XVF8_AURAN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF8_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.530e-8
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    4 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNL 117
            I+RGDKV VVNG H+G++GVVQ V+R+ NR+IVEGVN+
Sbjct:    3 IVRGDKVVVVNGRHRGQSGVVQHVLRQSNRLIVEGVNV 40          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A5D6Y0X1_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0X1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.080e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 ILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLV 120
            I+RGD V VVNG HKGK G V  VIR QNRVIVE +N+V
Sbjct:   28 IVRGDLVEVVNGPHKGKQGAVVGVIRDQNRVIVENINMV 66          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A7J8PQN9_GOSRA (KOW domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PQN9_GOSRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.170e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 135
            +ILRGD V ++ G  KG+ G+++ V+R QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMIIRGKDKGETGIIKRVVRSQNRVIVEGKNLVKKHIK 58          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A453HR24_AEGTS (KOW domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HR24_AEGTS)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-7
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 135
            +ILRGD V ++ G  KG++G+++ VIR QNRVIVEG NLV+  I+
Sbjct:   17 KILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIK 61          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: A0A6P5GCE2_ANACO (uncharacterized protein LOC109720357 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GCE2_ANACO)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 135
            +ILRGD V ++ G  KG+ G+++ VIR QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIK 58          
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Match: UPI0007EF38A1 (50S ribosomal protein L24-like isoform X2 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF38A1)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-7
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQ 135
            +ILRGD V V+ G  KG+ GVV+ VIR QNRVIVEG NLV+  I+
Sbjct:   14 KILRGDNVMVMRGKDKGETGVVKRVIRSQNRVIVEGKNLVKKHIK 58          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98661.19301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ79_ECTSI2.800e-1378.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0K9QFZ8_SPIOL4.380e-1058.70KOW domain-containing protein n=1 Tax=Spinacia ole... [more]
U2DVG9_9MOLU9.680e-960.0050S ribosomal protein L24 n=1 Tax=Haloplasma contr... [more]
A0A7S1C4Y4_9STRA1.360e-863.4150S ribosomal protein L24, chloroplastic n=1 Tax=B... [more]
F0XVF8_AURAN1.530e-868.4250S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A5D6Y0X1_9STRA7.080e-869.2350S ribosomal protein L24, chloroplastic n=1 Tax=P... [more]
A0A7J8PQN9_GOSRA1.170e-753.33KOW domain-containing protein n=1 Tax=Gossypium ra... [more]
A0A453HR24_AEGTS1.230e-755.56KOW domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A6P5GCE2_ANACO1.640e-755.56uncharacterized protein LOC109720357 n=1 Tax=Anana... [more]
UPI0007EF38A11.870e-762.2250S ribosomal protein L24-like isoform X2 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98661contigF-distichus_contig98661:1315..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D7FZ79
KEGG koko:K02895
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0198@1,KOG1708@2759
Ec32 ortholog descriptionRibosomal protein L24
Ec32 orthologEc-13_002770.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.780069-CDS-F-distichus_contig98661:1314..14521622931165.780069-CDS-F-distichus_contig98661:1314..1452Fucus distichus monoicousCDSF-distichus_contig98661 1315..1452 +
1690886186.8249967-CDS-F-distichus_contig98661:1314..14521690886186.8249967-CDS-F-distichus_contig98661:1314..1452Fucus distichus monoicousCDSF-distichus_contig98661 1315..1452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98661.19301.1prot_F-distichus_contig98661.19301.1Fucus distichus monoicouspolypeptideF-distichus_contig98661 1315..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98661.19301.1

>prot_F-distichus_contig98661.19301.1 ID=prot_F-distichus_contig98661.19301.1|Name=mRNA_F-distichus_contig98661.19301.1|organism=Fucus distichus monoicous|type=polypeptide|length=46bp
QILRGDKVHVVNGIHKGKAGVVQAVIRKQNRVIVEGVNLVRYFIQL
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mRNA from alignment at F-distichus_contig98661:1315..1452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98661.19301.1 ID=mRNA_F-distichus_contig98661.19301.1|Name=mRNA_F-distichus_contig98661.19301.1|organism=Fucus distichus monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at F-distichus_contig98661:1315..1452+ (Fucus distichus monoicous)
CAGATCTTGAGAGGGGACAAGGTACACGTGGTGAACGGGATCCACAAGGG CAAGGCCGGGGTCGTGCAGGCCGTCATCCGGAAGCAAAACAGGGTCATCG TGGAAGGCGTAAACTTGGTGAGATATTTTATCCAATTA
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Coding sequence (CDS) from alignment at F-distichus_contig98661:1315..1452+

>mRNA_F-distichus_contig98661.19301.1 ID=mRNA_F-distichus_contig98661.19301.1|Name=mRNA_F-distichus_contig98661.19301.1|organism=Fucus distichus monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at F-distichus_contig98661:1315..1452+ (Fucus distichus monoicous)
CAGATCTTGAGAGGGGACAAGGTACACGTGGTGAACGGGATCCACAAGGG
CAAGGCCGGGGTCGTGCAGGCCGTCATCCGGAAGCAAAACAGGGTCATCG
TGGAAGGCGTAAACTTGGTGAGATATTTTATCCAATTACAGATCTTGAGA
GGGGACAAGGTACACGTGGTGAACGGGATCCACAAGGGCAAGGCCGGGGT
CGTGCAGGCCGTCATCCGGAAGCAAAACAGGGTCATCGTGGAAGGCGTAA
ACTTGGTGAGATATTTTATCCAATTA
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