mRNA_F-distichus_contig96458.19102.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96458.19102.1
Unique NamemRNA_F-distichus_contig96458.19102.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: D7FXZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.590e-27
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 RWTEEAPELTGRTEGNKRVVFPDRGVIDGLGGGFSERS-GTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAELPGDGD 276
            RW+EEAPELTGRT+GNKRVVFPDRGVIDG+G  FSE S G       R Q  +LRPGDYAVV + E SG TLR SA+ARTTL EH  L  DG+
Sbjct:  134 RWSEEAPELTGRTDGNKRVVFPDRGVIDGMGR-FSEVSCGKQQ---QRQQRTTLRPGDYAVVNVRETSGITLRGSAIARTTLAEHDALRVDGE 222
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A6H5KEL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.610e-18
Identity = 57/127 (44.88%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 RWTEEAPELTGRTEGNKRVVFPDRGVIDGLG---------------GGFSERSGTHLFILA--------------------RDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAELPGDGD 276
            RW EEAPELTGRT+GNKRVVFPDRGV+ GLG                  S R+     + A                         +LRPGDYAVV + E SG TLR SA+ARTTL+EH  L  DG+
Sbjct:  607 RWREEAPELTGRTDGNKRVVFPDRGVVGGLGRFSGVSCGQQXXXXXXRVSGRARADYLMPAPCKCXXXXXXXXXXXXXXXXXXXXTTLRPGDYAVVNVRETSGITLRGSAIARTTLVEHDALRVDGE 733
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A7S4FW59_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FW59_9EUGL)

HSP 1 Score: 63.5 bits (153), Expect = 9.820e-10
Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    7 TEEAPELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEH 252
            T E P  TGRT+ NKRVVF D  + DG  G  +  +          ++V   PGDY VV+I +A GHTLR  A+ART+L E+
Sbjct:  482 TPEHPMSTGRTDTNKRVVFEDHVIHDGWHGKVAPTA-------CGGRSVQPNPGDYVVVQITQARGHTLRGIAIARTSLAEY 556
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A836CJ12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ12_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.660e-8
Identity = 41/93 (44.09%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 RWTEEAPELTGRTEGNKRVVFP-DRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAE-LPGDG 273
            R T E P LTGRT+GNKRVV   D  V   L       +G  L        V  + GDY +V++ EA+GHTL    +ARTTL EH   L G G
Sbjct:  443 RSTTERPLLTGRTDGNKRVVMNGDTAVPASLDAAARAAAGAPL---PPSPLVLPQAGDYVLVRVEEATGHTLTGRVLARTTLREHQRWLEGGG 532
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: H9G933_ANOCA (Uncharacterized protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=H9G933_ANOCA)

HSP 1 Score: 56.6 bits (135), Expect = 2.710e-7
Identity = 33/78 (42.31%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:   16 APELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLE 249
            A EL+GR +GN +V+FPD  + DG G G                TV  +PGDY +VKI  A+  TL+   M RTTL E
Sbjct:  524 ALELSGRNDGNIKVIFPDVKMDDGTGSG---------------STVHAQPGDYVLVKISSANSQTLKGIPMRRTTLRE 586
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: S4RRT8_PETMA (CDK5 regulatory subunit associated protein 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RRT8_PETMA)

HSP 1 Score: 55.5 bits (132), Expect = 6.860e-7
Identity = 34/81 (41.98%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:   22 ELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAELP 264
            EL+GRT+GN RVVFPD  + DG G                    S R GDY  VKI  +S  +LR +A+ RTTL E    P
Sbjct:  479 ELSGRTDGNARVVFPDVLLPDGAGS---------------PALASARRGDYVAVKITSSSSQSLRGTALHRTTLREFHATP 544
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: UPI001C4BC96F (mitochondrial tRNA methylthiotransferase CDK5RAP1 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BC96F)

HSP 1 Score: 53.5 bits (127), Expect = 3.290e-6
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:   22 ELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHA 255
            EL+GR +GN +V+FPD  + DG   G                 V  +PGDY +VKI  A+  TL+  A+ RTTL E A
Sbjct:  527 ELSGRNDGNIKVIFPDVEMDDGTDSG---------------SVVHAQPGDYVLVKISSANSQTLKGIALRRTTLRESA 589
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A7S3KVK6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KVK6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.450e-6
Identity = 38/87 (43.68%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    1 RWTEEAPELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQT-VSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAE 258
            R T EAP   GRT+ NKR+VFP   V D L    S  S   +     D T  +L  G+Y VV++ EA GHTLR   +  TTL   AE
Sbjct:  552 RSTMEAPAWHGRTDQNKRIVFP---VNDNL----SCISHDDILSGTEDATCTTLSKGEYGVVRVTEAKGHTLRGDLICLTTLKCFAE 631
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A7S3D2G3_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D2G3_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   22 ELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHA 255
            E TGRT+ N++VVFP + V   L G  S +             V L+ GD+ +V+I   +  TLR +A+ARTT+ EHA
Sbjct:  561 EWTGRTDTNRKVVFPKQAVASTLAGDASAK-------------VDLQVGDFVLVQIESDTLTTLRGTALARTTIPEHA 625
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BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Match: A0A340YFD1_LIPVE (LOW QUALITY PROTEIN: CDK5 regulatory subunit associated protein 1 n=6 Tax=Laurasiatheria TaxID=314145 RepID=A0A340YFD1_LIPVE)

HSP 1 Score: 50.8 bits (120), Expect = 2.910e-5
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:   16 APELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQTVSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHA 255
            A +L+GR +GN +V+FPD  + D    G                 V  +PGDY +VKI  AS  TL+   + RTTL + A
Sbjct:  472 ATDLSGRNDGNLKVIFPDVEMEDVTNSGLR---------------VQAQPGDYVLVKITSASSQTLKGHVLCRTTLKDSA 536
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96458.19102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FXZ0_ECTSI2.590e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEL0_9PHAE1.610e-1844.88Reverse transcriptase domain-containing protein n=... [more]
A0A7S4FW59_9EUGL9.820e-1045.12Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A836CJ12_9STRA5.660e-844.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H9G933_ANOCA2.710e-742.31Uncharacterized protein n=1 Tax=Anolis carolinensi... [more]
S4RRT8_PETMA6.860e-741.98CDK5 regulatory subunit associated protein 1 n=2 T... [more]
UPI001C4BC96F3.290e-639.74mitochondrial tRNA methylthiotransferase CDK5RAP1 ... [more]
A0A7S3KVK6_9STRA8.450e-643.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3D2G3_9EUKA1.580e-539.74Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A340YFD1_LIPVE2.910e-536.25LOW QUALITY PROTEIN: CDK5 regulatory subunit assoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96458contigF-distichus_contig96458:139..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue9.1e-22
Seed eggNOG ortholog2880.D7FXZ0
Preferred nameCDK5RAP1
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000373,GO:0000375,GO:0000377,GO:0000959,GO:0000963,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006450,GO:0006469,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009451,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016070,GO:0016740,GO:0016782,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0030154,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0033673,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045595,GO:0045664,GO:0045727,GO:0045736,GO:0045786,GO:0045859,GO:0045903,GO:0045936,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050497,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051338,GO:0051348,GO:0051726,GO:0051960,GO:0060255,GO:0060284,GO:0060322,GO:0065007,GO:0065008,GO:0065009,GO:0070129,GO:0070131,GO:0070525,GO:0070900,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0090304,GO:0090646,GO:0098772,GO:0140053,GO:1900864,GO:1901360,GO:1904029,GO:1904030,GO:2000026,GO:2000112
EggNOG free text desc.N6-isopentenyladenosine methylthiotransferase activity
EggNOG OGsCOG0621@1,KOG2492@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.29535-CDS-F-distichus_contig96458:138..2561622931142.29535-CDS-F-distichus_contig96458:138..256Fucus distichus monoicousCDSF-distichus_contig96458 139..256 +
1690886176.2804499-CDS-F-distichus_contig96458:138..2561690886176.2804499-CDS-F-distichus_contig96458:138..256Fucus distichus monoicousCDSF-distichus_contig96458 139..256 +
1622931142.3113317-CDS-F-distichus_contig96458:662..8201622931142.3113317-CDS-F-distichus_contig96458:662..820Fucus distichus monoicousCDSF-distichus_contig96458 663..820 +
1690886176.2925417-CDS-F-distichus_contig96458:662..8201690886176.2925417-CDS-F-distichus_contig96458:662..820Fucus distichus monoicousCDSF-distichus_contig96458 663..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96458.19102.1prot_F-distichus_contig96458.19102.1Fucus distichus monoicouspolypeptideF-distichus_contig96458 139..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96458.19102.1

>prot_F-distichus_contig96458.19102.1 ID=prot_F-distichus_contig96458.19102.1|Name=mRNA_F-distichus_contig96458.19102.1|organism=Fucus distichus monoicous|type=polypeptide|length=92bp
RWTEEAPELTGRTEGNKRVVFPDRGVIDGLGGGFSERSGTHLFILARDQT
VSLRPGDYAVVKIVEASGHTLRASAMARTTLLEHAELPGDGD
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mRNA from alignment at F-distichus_contig96458:139..820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96458.19102.1 ID=mRNA_F-distichus_contig96458.19102.1|Name=mRNA_F-distichus_contig96458.19102.1|organism=Fucus distichus monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at F-distichus_contig96458:139..820+ (Fucus distichus monoicous)
AGGTGGACCGAAGAGGCGCCGGAGCTGACTGGTCGGACGGAGGGAAACAA
ACGTGTAGTTTTTCCAGACCGAGGCGTGATTGACGGCCTTGGGGGAGGGT
TCAGCGAGAGGTCGGGAAGTCCAGAGGTGAGGATTTGTTTTTCTCCGAGG
AGGTGATGAATACTTTTCAATTCTGCGAGGAATGCCCGGCGTCTTGCGCC
GCAGACTCTCCCAGCTTCCAGCGATGTTTGGGAGCTTGTGCTTGTAGGAT
TCACTGATGTGGAGGCGGTGATATCAAGGTAACTACCTATTCTTTATGAA
AACCTCACAGCATAGCAGTCGTGTTTCATTGGTGACATGCTTTGCGAAAT
AGCGACAAATAGGCATGTCTGTTCTTTTGGTCTTGATAATCGATCTCATG
TCGCTTGCCGTCGTTCTCCGCACGGCGGCTTATCGTCACGGCCACTTTCG
TGCGGAGGTTCGCGCGAAAGCGGGCGCGTCCATACCTATCTTTGTCGTCG
ATCGTCTGGCAGCCCAACCCACAGCCCACCTGTTTATCCTCGCCCGCGAC
CAGACGGTGTCTCTACGCCCCGGCGACTACGCTGTGGTCAAGATCGTCGA
GGCCTCTGGGCACACGTTGCGAGCATCGGCGATGGCACGCACGACATTGC
TCGAACACGCAGAGCTACCGGGCGACGGGGAC
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Coding sequence (CDS) from alignment at F-distichus_contig96458:139..820+

>mRNA_F-distichus_contig96458.19102.1 ID=mRNA_F-distichus_contig96458.19102.1|Name=mRNA_F-distichus_contig96458.19102.1|organism=Fucus distichus monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at F-distichus_contig96458:139..820+ (Fucus distichus monoicous)
AGGTGGACCGAAGAGGCGCCGGAGCTGACTGGTCGGACGGAGGGAAACAA
ACGTGTAGTTTTTCCAGACCGAGGCGTGATTGACGGCCTTGGGGGAGGGT
TCAGCGAGAGGTCGGGAAAGGTGGACCGAAGAGGCGCCGGAGCTGACTGG
TCGGACGGAGGGAAACAAACGTGTAGTTTTTCCAGACCGAGGCGTGATTG
ACGGCCTTGGGGGAGGGTTCAGCGAGAGGTCGGGAACCCACCTGTTTATC
CTCGCCCGCGACCAGACGGTGTCTCTACGCCCCGGCGACTACGCTGTGGT
CAAGATCGTCGAGGCCTCTGGGCACACGTTGCGAGCATCGGCGATGGCAC
GCACGACATTGCTCGAACACGCAGAGCTACCGGGCGACGGGGACCCCACC
TGTTTATCCTCGCCCGCGACCAGACGGTGTCTCTACGCCCCGGCGACTAC
GCTGTGGTCAAGATCGTCGAGGCCTCTGGGCACACGTTGCGAGCATCGGC
GATGGCACGCACGACATTGCTCGAACACGCAGAGCTACCGGGCGACGGGG
AC
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