mRNA_F-distichus_contig9507.18965.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9507.18965.1
Unique NamemRNA_F-distichus_contig9507.18965.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Match: A0A6H5JLE2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.130e-12
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   58 VNAQVWHRQLGHLYAQSLDILRKLEDTGTTWVSAVSDCDVCATGQATQISHPTTPNQKVHRPFQLCFGDLMGPI--PSVVIGGY-KYVSKTIDE 330
            VNA  WHR+LGHL A+SLDILRK   TG  +  ++S C V    +  Q SHP    + + RP QL   D MGP+  P+   GGY  Y  K  D+
Sbjct:  436 VNADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCAVFQIAKDKQSSHPKQSTRDLSRPGQLVVIDNMGPVNPPAKYKGGYFPYACKITDD 529
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BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Match: A0A438G765_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G765_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6
Identity = 35/104 (33.65%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   28 GAKELSMNAAVNAQVWHRQLGHLYAQSLDILRKLEDTGTTWVSAVSDCDVCATGQATQISHPTTPNQKVHR---PFQLCFGDLMGPIPSVVIGGYKYVSKTIDE 330
            G K   MN + ++ +WH++LGH+  Q L+IL K         S    C VC  G+ T      T N+K+ R      L   D+ GP+    +GGYKY    ID+
Sbjct:  365 GCKRARMNLS-SSMLWHKRLGHISRQRLEILVKDGVLSNLDFSDFETCVVCLKGKMTA----KTRNEKIDRCGSTLDLIHTDICGPLTLTALGGYKYFITFIDD 463
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BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Match: A0A438J3B8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J3B8_VITVI)

HSP 1 Score: 53.5 bits (127), Expect = 5.680e-6
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:   28 GAKELSMNAAVNAQVWHRQLGHLYAQSLDILRKLEDTGTTWVSAVSDCDVCATGQATQISHPTTPNQKVHR---PFQLCFGDLMGPIPSVVIGGYKYVSKTIDE 330
            G K   MN + ++ +WH++LGH+  Q L+IL K         S    C VC  G+ T      T  +K+ R      L   D+ GP+    +GGYKY    ID+
Sbjct:  148 GCKRARMNLS-SSMLWHKRLGHISRQRLEILVKDGVLSNLDFSDFETCVVCLKGKMTV----NTRTEKIDRCGSTLDLIHTDICGPLTPTALGGYKYFITFIDD 246
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BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Match: A0A507DLD9_9FUNG (DNA-directed DNA polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DLD9_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.920e-6
Identity = 27/95 (28.42%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:   55 AVNAQVWHRQLGHLYAQSLDILRK---LEDTGTTWVSAVSDCDVCATGQATQISHPTTPNQKVHRPFQLCFGDLMGPIPSVVIGGYKYVSKTIDE 330
            A   + WHR+LGHL  QS+ ++ +   ++      V   + C   A G+AT++  P   + +     +L   D+ GP+ +++IGG +Y    ID 
Sbjct:   66 AATLETWHRRLGHLNCQSIQLMARKGLVQGMEAVGVLETAPCLTFALGKATKLPLPKECSSRASEVLELVHSDVCGPMRTLIIGGARYFILFIDN 160
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BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Match: A5BKE8_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKE8_VITVI)

HSP 1 Score: 53.5 bits (127), Expect = 6.650e-6
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:   28 GAKELSMNAAVNAQVWHRQLGHLYAQSLDILRKLEDTGTTWVSAVSDCDVCATGQATQISHPTTPNQKVHR---PFQLCFGDLMGPIPSVVIGGYKYVSKTIDE 330
            G K   MN + ++ +WH++LGH+  Q L+IL K         S    C VC  G+ T      T  +K+ R      L   D+ GP+    +GGYKY    ID+
Sbjct:  295 GCKRARMNLS-SSMLWHKRLGHISRQRLEILVKDGVLSNLDFSDFETCVVCLKGKMTV----NTRTEKIDRCGSTLDLIHTDICGPLTPTALGGYKYFITFIDD 393
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9507.18965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JLE2_9PHAE1.130e-1244.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A438G765_VITVI1.360e-633.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J3B8_VITVI5.680e-632.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A507DLD9_9FUNG5.920e-628.42DNA-directed DNA polymerase n=1 Tax=Powellomyces h... [more]
A5BKE8_VITVI6.650e-632.69Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9507contigF-distichus_contig9507:4663..4995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.8101192-CDS-F-distichus_contig9507:4662..49951622931126.8101192-CDS-F-distichus_contig9507:4662..4995Fucus distichus monoicousCDSF-distichus_contig9507 4663..4995 +
1690886169.5125787-CDS-F-distichus_contig9507:4662..49951690886169.5125787-CDS-F-distichus_contig9507:4662..4995Fucus distichus monoicousCDSF-distichus_contig9507 4663..4995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9507.18965.1prot_F-distichus_contig9507.18965.1Fucus distichus monoicouspolypeptideF-distichus_contig9507 4663..4995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9507.18965.1

>prot_F-distichus_contig9507.18965.1 ID=prot_F-distichus_contig9507.18965.1|Name=mRNA_F-distichus_contig9507.18965.1|organism=Fucus distichus monoicous|type=polypeptide|length=111bp
VLDLNANRYGAKELSMNAAVNAQVWHRQLGHLYAQSLDILRKLEDTGTTW
VSAVSDCDVCATGQATQISHPTTPNQKVHRPFQLCFGDLMGPIPSVVIGG
YKYVSKTIDE*
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mRNA from alignment at F-distichus_contig9507:4663..4995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9507.18965.1 ID=mRNA_F-distichus_contig9507.18965.1|Name=mRNA_F-distichus_contig9507.18965.1|organism=Fucus distichus monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at F-distichus_contig9507:4663..4995+ (Fucus distichus monoicous)
GTGCTGGACTTGAATGCCAACCGATATGGTGCCAAGGAGCTATCAATGAA
CGCAGCCGTCAATGCCCAGGTGTGGCACCGGCAGCTGGGTCATCTCTATG
CACAGAGCCTAGATATTTTACGCAAGCTAGAAGACACTGGTACCACATGG
GTGTCGGCTGTCTCGGATTGCGACGTTTGCGCCACGGGGCAAGCTACACA
GATTTCTCACCCGACGACACCCAACCAAAAGGTCCATCGGCCTTTCCAGC
TGTGCTTCGGGGACCTGATGGGGCCTATCCCGTCGGTGGTCATAGGCGGC
TACAAGTACGTCAGTAAGACAATCGATGAGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig9507:4663..4995+

>mRNA_F-distichus_contig9507.18965.1 ID=mRNA_F-distichus_contig9507.18965.1|Name=mRNA_F-distichus_contig9507.18965.1|organism=Fucus distichus monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at F-distichus_contig9507:4663..4995+ (Fucus distichus monoicous)
GTGCTGGACTTGAATGCCAACCGATATGGTGCCAAGGAGCTATCAATGAA
CGCAGCCGTCAATGCCCAGGTGTGGCACCGGCAGCTGGGTCATCTCTATG
CACAGAGCCTAGATATTTTACGCAAGCTAGAAGACACTGGTACCACATGG
GTGTCGGCTGTCTCGGATTGCGACGTTTGCGCCACGGGGCAAGCTACACA
GATTTCTCACCCGACGACACCCAACCAAAAGGTCCATCGGCCTTTCCAGC
TGTGCTTCGGGGACCTGATGGGGCCTATCCCGTCGGTGGTCATAGGCGGC
TACAAGTACGTCAGTAAGACAATCGATGAGTAAGTGCTGGACTTGAATGC
CAACCGATATGGTGCCAAGGAGCTATCAATGAACGCAGCCGTCAATGCCC
AGGTGTGGCACCGGCAGCTGGGTCATCTCTATGCACAGAGCCTAGATATT
TTACGCAAGCTAGAAGACACTGGTACCACATGGGTGTCGGCTGTCTCGGA
TTGCGACGTTTGCGCCACGGGGCAAGCTACACAGATTTCTCACCCGACGA
CACCCAACCAAAAGGTCCATCGGCCTTTCCAGCTGTGCTTCGGGGACCTG
ATGGGGCCTATCCCGTCGGTGGTCATAGGCGGCTACAAGTACGTCAGTAA
GACAATCGATGAGTAA
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