mRNA_F-distichus_contig106408.549.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106408.549.1
Unique NamemRNA_F-distichus_contig106408.549.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: D7G144_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G144_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.060e-23
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   10 FIAQTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            F+ ++ SL +CV VGF+VG VGV  I  DTWPT+EME+RGNAWGLLTGIAIAIPSGMAVALSIL
Sbjct:  690 FLVESFSLLICVGVGFLVGMVGVNFIEADTWPTHEMETRGNAWGLLTGIAIAIPSGMAVALSIL 753          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A6H5KJ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ96_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.700e-22
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   10 FIAQTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            F+ ++ SL +CV VGF+VG VGV  I  DTWPT+EME+RGN WGLLTGI IAIPSGMAVALSIL
Sbjct:  709 FLVESFSLLICVGVGFLVGIVGVNFIEADTWPTHEMETRGNPWGLLTGIVIAIPSGMAVALSIL 772          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A7S1YA91_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YA91_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.320e-12
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   22 TLSLSVCVAVGFVVGTVGVFL-IAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            +LSL  CV +G +VG    F  +AE+TWPT EM+ RG+  GLLTGIAIAIPSGM V LSIL
Sbjct:    1 SLSLLGCVLIGALVGIGAAFTPLAEETWPTNEMQIRGDPTGLLTGIAIAIPSGMGVCLSIL 61          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A7S3UPM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPM3_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 9.690e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   19 QTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            +  SL +CV +G VV  V      ++ WPT EME RG+  GL  GIAIA+PSGM VALSIL
Sbjct:    6 EIFSLLLCVFMGIVVACVSYPFDVDELWPTAEMEGRGSWMGLNLGIAIAVPSGMGVALSIL 66          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A7S2XSZ6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSZ6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.530e-10
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   10 FIAQTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            F  +  +L +C+ VG  +     F  + + WPT EM+ RG+  GL TGIAIAIPSGM V+LSIL
Sbjct:  451 FKVEIYALGICIFVGVSIALTAGFTDSAELWPTNEMQIRGDVEGLYTGIAIAIPSGMGVSLSIL 514          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A0D2WJT9_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJT9_CAPO3)

HSP 1 Score: 60.5 bits (145), Expect = 4.950e-9
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   16 AQTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            ++ + LS+C+A+GF++GT+      + +WPT EM +RG+  G+  GI +AI SG  VALS+L
Sbjct:  655 SEVIGLSICLAMGFIMGTIWTNWGPQFSWPTSEMAARGDWTGMYIGICVAIASGFGVALSVL 716          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: UPI00065BCC81 (uncharacterized protein LOC101851953 isoform X1 n=3 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BCC81)

HSP 1 Score: 57.0 bits (136), Expect = 8.200e-8
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   28 SLSVCVAVGFVVGTV-------GVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
             L +C+ VGF+ G +       G+   + D+WPT+EM SRG+   L  G+ IAIPSG  VALSIL
Sbjct:  362 GLVLCILVGFLTGFIPAVLELGGLSWRSSDSWPTFEMSSRGSLRSLPVGVLIAIPSGAGVALSIL 426          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: D8M6T4_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6T4_BLAHO)

HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   16 AQTLSLSVCVAVGFVVGTVGVFLIAEDT------WPTYEMESRGNAWGLLTGIAIAIPSGMAVALSI 198
            ++ + + +C   GF++G +G  L  +        WPT EM +RG+A+ L+ G  IA+PSG+ VAL+I
Sbjct:   49 SELIGIGICFVCGFIIGALGSPLALQTRGNIWPGWPTAEMVNRGDAYNLIIGFLIALPSGVGVALAI 115          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A2L2YGY8_PARTP (Uncharacterized protein (Fragment) n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YGY8_PARTP)

HSP 1 Score: 55.1 bits (131), Expect = 3.860e-7
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   19 QTLSLSVCVAVGFVVGTV-----GVFLIAEDTWPTYEMESRGNAWGLLTGIAIAIPSGMAVALSIL 201
            +TLSL +CV +GF +G V     GV+  +   WP  EM SRG   GL  G+ IA+PSG  VALS+L
Sbjct:   95 ETLSLFLCVIIGFTIGIVCQVLNGVWNNSRQ-WPNPEMISRGQERGLWIGVLIALPSGAGVALSVL 159          
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Match: A0A0L0D8F2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8F2_THETB)

HSP 1 Score: 54.7 bits (130), Expect = 5.340e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   19 QTLSLSVCVAVGFVVGTVGVFLIAEDT-WPTYEMESRGNAWGLLTGIAIAIPSGMAVALS 195
            + + L++C  VG +VG +G     +D  WP  EM SRG   GLL GIAIA+PSG+ VALS
Sbjct:  393 ELVGLAICFVVGGLVG-LGFAAWGDDLDWPNSEMSSRGTGVGLLIGIAIAVPSGVGVALS 451          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106408.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G144_ECTSI4.060e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ96_9PHAE6.700e-2271.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YA91_9STRA1.320e-1262.30Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3UPM3_HETAK9.690e-1154.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XSZ6_9STRA7.530e-1048.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0D2WJT9_CAPO34.950e-943.55Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
UPI00065BCC818.200e-846.15uncharacterized protein LOC101851953 isoform X1 n=... [more]
D8M6T4_BLAHO2.860e-737.31Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A2L2YGY8_PARTP3.860e-748.48Uncharacterized protein (Fragment) n=3 Tax=Paraste... [more]
A0A0L0D8F2_THETB5.340e-750.00Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106408contigF-distichus_contig106408:404..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog2880.D7G144
Hectar predicted targeting categorysignal peptide
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.Domain of unknown function (DUF389)
EggNOG OGs2QWS6@2759,COG1808@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.7111647-CDS-F-distichus_contig106408:403..6101622928991.7111647-CDS-F-distichus_contig106408:403..610Fucus distichus monoicousCDSF-distichus_contig106408 404..610 -
1690885095.5485299-CDS-F-distichus_contig106408:403..6101690885095.5485299-CDS-F-distichus_contig106408:403..610Fucus distichus monoicousCDSF-distichus_contig106408 404..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106408.549.1prot_F-distichus_contig106408.549.1Fucus distichus monoicouspolypeptideF-distichus_contig106408 404..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106408.549.1

>prot_F-distichus_contig106408.549.1 ID=prot_F-distichus_contig106408.549.1|Name=mRNA_F-distichus_contig106408.549.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
LVVFIAQTLSLSVCVAVGFVVGTVGVFLIAEDTWPTYEMESRGNAWGLLT
GIAIAIPSGMAVALSILR*
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mRNA from alignment at F-distichus_contig106408:404..610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106408.549.1 ID=mRNA_F-distichus_contig106408.549.1|Name=mRNA_F-distichus_contig106408.549.1|organism=Fucus distichus monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at F-distichus_contig106408:404..610- (Fucus distichus monoicous)
CTTGTGGTTTTTATCGCGCAGACGCTCTCGCTGTCCGTCTGCGTTGCTGT GGGTTTCGTAGTGGGAACGGTGGGGGTGTTCTTGATCGCCGAAGATACGT GGCCCACGTACGAGATGGAGTCTCGAGGAAACGCTTGGGGTCTACTAACC GGCATTGCTATCGCGATACCCTCCGGCATGGCAGTGGCCCTTTCCATCTT GAGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig106408:404..610-

>mRNA_F-distichus_contig106408.549.1 ID=mRNA_F-distichus_contig106408.549.1|Name=mRNA_F-distichus_contig106408.549.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig106408:404..610- (Fucus distichus monoicous)
CTTGTGGTTTTTATCGCGCAGACGCTCTCGCTGTCCGTCTGCGTTGCTGT
GGGTTTCGTAGTGGGAACGGTGGGGGTGTTCTTGATCGCCGAAGATACGT
GGCCCACGTACGAGATGGAGTCTCGAGGAAACGCTTGGGGTCTACTAACC
GGCATTGCTATCGCGATACCCTCCGGCATGGCAGTGGCCCTTTCCATCTT
GAGGTAACTTGTGGTTTTTATCGCGCAGACGCTCTCGCTGTCCGTCTGCG
TTGCTGTGGGTTTCGTAGTGGGAACGGTGGGGGTGTTCTTGATCGCCGAA
GATACGTGGCCCACGTACGAGATGGAGTCTCGAGGAAACGCTTGGGGTCT
ACTAACCGGCATTGCTATCGCGATACCCTCCGGCATGGCAGTGGCCCTTT
CCATCTTGAGGTAA
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