prot_F-distichus_contig101858.154.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig101858.154.1
Unique Nameprot_F-distichus_contig101858.154.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length40
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101858.154.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..37
e-value: 2.6E-6
score: 27.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 3..37
e-value: 1.8E-8
score: 32.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..35
score: 11.751
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..38
e-value: 1.4E-8
score: 36.2

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..37
e-value: 2.6E-6
score: 27.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 3..37
e-value: 1.8E-8
score: 32.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..35
score: 11.751
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..38
e-value: 1.4E-8
score: 36.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101858contigF-distichus_contig101858:1697..1816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101858.154.1mRNA_F-distichus_contig101858.154.1Fucus distichus monoicousmRNAF-distichus_contig101858 1697..1816 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig101858.154.1 ID=prot_F-distichus_contig101858.154.1|Name=mRNA_F-distichus_contig101858.154.1|organism=Fucus distichus monoicous|type=polypeptide|length=40bp
DVVSFSAAITALGRAGQRGRALELLREMREEGVAPNVRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf