prot_F-distichus_contig101339.106.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-distichus_contig101339.106.1
Unique Name	prot_F-distichus_contig101339.106.1
Type	polypeptide
Organism	Fucus distichus monoicous (Fucus distichus monoicous)
Sequence length	338

Homology

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.170e-26
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 0

Query:  224 SPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAG-TRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            S   +S EDTIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT +A  + V+   ++ G   G               GR  PP PA RRAVVRRLYDP  GDLLDEALVLWMPGPR
Sbjct:  188 SASSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR 303

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.020e-25
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 0

Query:  224 SPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSAD---GEGVGXXXXXXXXXXXXXDR-GRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            SP  +S EDTIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT +  T +S   +A+   G   G  XXXXXXXXXXX   GR  PP PA RRAVVRRLYDP  GDLLDEALVLWMPGPR
Sbjct:   24 SPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSA--TTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR 140

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.190e-14
Identity = 50/107 (46.73%), Postives = 56/107 (52.34%), Query Frame = 0

Query:  232 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            DTIFALS+G +G AGVAV+RVSGP +   L  L  + G     P +                                RRA VRRLYDPV GDLLDEALVLWMPGPR
Sbjct:    4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEA--------------------------------RRAAVRRLYDPVKGDLLDEALVLWMPGPR 78

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A0G4EE61_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE61_VITBC)

HSP 1 Score: 82.4 bits (202), Expect = 1.320e-13
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 0

Query:  195 LTATRLHPAQQHRRELTYSSSSGGDNAPRSPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            L++  LH  QQ     +   SS G +A         +DTI+ALS+G SG AGVAV+R+SGP S  +L+ LT    TR     S++                         PLP PR+AV+RR+YDP+ G+LLD+ LV+W P P 
Sbjct:   49 LSSDALHRVQQGHASSSLEESSIGQDA--------ADDTIYALSSG-SGKAGVAVIRISGPLSPLILQLLTTDPSTRPCSSSSSNAIPYHGLR-----------------PLPPPRQAVLRRIYDPLVGELLDQGLVMWFPSPH 166

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05)

HSP 1 Score: 71.2 bits (173), Expect = 5.750e-12
Identity = 45/107 (42.06%), Postives = 58/107 (54.21%), Query Frame = 0

Query:  232 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            DTI+A+S+G +G AG+AVVRVSGP + + + ALT S                                      LPA RRAVVR+L DP  GDLLD+A+VLW+PGP+
Sbjct:    5 DTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGS--------------------------------------LPASRRAVVRKLGDPATGDLLDQAVVLWLPGPQ 72

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A258GN67_9PROT (tRNA modification GTPase MnmE n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258GN67_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 2.850e-11
Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 0

Query:  221 APRSPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 337
            APR P      DTI AL++G SG AGVAV+R SGP SA V+ ALT     R ++P   D  G               +  +P   LP PR+A VR+L+D  AG  LDEAL+LWMPGP
Sbjct:    3 APRGPT-----DTIIALASG-SGRAGVAVIRASGPGSAGVIRALT-----RANQPYPGDSSGPTGSEGALDPADVSRETPQPQS-LPQPRKAAVRKLFDE-AGGFLDEALILWMPGP 106

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A7S4DLF8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLF8_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 1.390e-10
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 0

Query:  232 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            DTI+ALS+G+   AGVA++R+SGPR+ +VLE LT       + PP       G                     +P PR A +R+++DP   +LLDE+LVLW PGP+
Sbjct:   95 DTIYALSSGHGVVAGVAIIRISGPRAQEVLEQLT-------APPPDTHQFAKGK--------------------IPTPRMACMRKIFDPETKELLDESLVLWFPGPK 174

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A395LN76_9SPHN (tRNA modification GTPase MnmE n=2 Tax=Alteriqipengyuania lutimaris TaxID=1538146 RepID=A0A395LN76_9SPHN)

HSP 1 Score: 70.9 bits (172), Expect = 6.340e-10
Identity = 51/111 (45.95%), Postives = 56/111 (50.45%), Query Frame = 0

Query:  228 TSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 338
            T   DTIFALS+G S P GVAV+RVSGPR+ Q LE LT S                                      LP  RRA VR++ DP AG  LDEALVLWMPGPR
Sbjct:    3 TDPRDTIFALSSG-SPPCGVAVIRVSGPRAGQALETLTGS--------------------------------------LPEQRRASVRQVVDPQAG-WLDEALVLWMPGPR 73

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: X5MLT6_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MLT6_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 2.840e-9
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 0

Query:  231 EDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 337
            +DT+FALS+G  G AG+AV+R+SGP +A  L AL+                                     G  LP+PR+AVVRRL DP   + LD+ALVLW+PGP
Sbjct:    2 DDTVFALSSGQ-GRAGIAVIRISGPHAADALTALS-------------------------------------GTDLPSPRKAVVRRLTDPRTDEQLDQALVLWLPGP 70

[Close]

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: UPI00056EA609 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00056EA609)

HSP 1 Score: 68.6 bits (166), Expect = 3.990e-9
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 0

Query:  226 KQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 337
            +Q  + DTIFALSTG  G A +AV+R+SGPR+  VL +LT                                     G  LP  R+AVVR + DP  G+++DEALVLW PGP
Sbjct:    2 QQDRERDTIFALSTGQ-GAAAIAVIRISGPRAGDVLRSLT-------------------------------------GRNLPEARKAVVRSIRDPETGEVVDEALVLWFPGP 75

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot

BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LG51_ECTSI	1.170e-26	59.48	TrmE, organellal GTPase involved in tRNA modificat...	[more]
A0A6H5K111_9PHAE	1.020e-25	68.91	TrmE-type G domain-containing protein n=1 Tax=Ecto...	[more]
A0A836CK05_9STRA	4.190e-14	46.73	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A0G4EE61_VITBC	1.320e-13	38.19	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
UPI00199C6C05	5.750e-12	42.06	tRNA uridine-5-carboxymethylaminomethyl(34) synthe...	[more]
A0A258GN67_9PROT	2.850e-11	46.15	tRNA modification GTPase MnmE n=2 Tax=Alphaproteob...	[more]
A0A7S4DLF8_HETAK	1.390e-10	39.25	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A395LN76_9SPHN	6.340e-10	45.95	tRNA modification GTPase MnmE n=2 Tax=Alteriqipeng...	[more]
X5MLT6_9HYPH	2.840e-9	40.19	tRNA modification GTPase MnmE n=1 Tax=Candidatus P...	[more]
UPI00056EA609	3.990e-9	39.29	tRNA uridine-5-carboxymethylaminomethyl(34) synthe...	[more]

Pages

InterPro

Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018948	GTP-binding protein TrmE, N-terminal	PFAM	PF10396	TrmE_N	coord: 233..338 e-value: 1.7E-9 score: 38.0
None	No IPR available	PANTHER	PTHR42714	FAMILY NOT NAMED	coord: 228..338
None	No IPR available	PANTHER	PTHR42714:SF2	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	coord: 228..338
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..338
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.726
None	No IPR available	SUPERFAMILY	103025	Folate-binding domain	coord: 232..338

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018948	GTP-binding protein TrmE, N-terminal	PFAM	PF10396	TrmE_N	coord: 233..338 e-value: 1.7E-9 score: 38.0
None	No IPR available	PANTHER	PTHR42714	FAMILY NOT NAMED	coord: 228..338
None	No IPR available	PANTHER	PTHR42714:SF2	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	coord: 228..338
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..338
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.726
None	No IPR available	SUPERFAMILY	103025	Folate-binding domain	coord: 232..338

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig101339	contig	F-distichus_contig101339:591..1604 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Fucus distichus monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig101339.106.1	mRNA_F-distichus_contig101339.106.1	Fucus distichus monoicous	mRNA	F-distichus_contig101339 575..1604 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-distichus_contig101339.106.1 ID=prot_F-distichus_contig101339.106.1|Name=mRNA_F-distichus_contig101339.106.1|organism=Fucus distichus monoicous|type=polypeptide|length=338bp
MRTDLVQLSPVRLLAVFLLSLQETVCLVTNRGGGVAAPRRTTAFSPKTFS
TKNSNTSSTTCKTRTSCRTMRWRCCGLAVSPAVESAYLWRHSGSVNCRSY
RSYRHRVITALLTLPPPRGGGGSDRGGRRLMLTERATSTTGSTATAPTTT
FGAVAAAFSCTTRGRRRRFQPPPLLALLPHDGGNNRYTLPGAAALTATRL
HPAQQHRRELTYSSSSGGDNAPRSPKQTSQEDTIFALSTGNSGPAGVAVV
RVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGDGKGEGGGRSGGGDRG
RPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018948	GTP-bd_TrmE_N