mRNA_F-distichus_contig101339.106.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.310e-26 Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 2
Query: 686 SPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAG-TRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
S +S EDTIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT +A + V+ ++ G G GR PP PA RRAVVRRLYDP GDLLDEALVLWMPGPR
Sbjct: 188 SASSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR 303
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.140e-25 Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 2
Query: 686 SPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSAD---GEGVGXXXXXXXXXXXXXDR-GRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
SP +S EDTIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT + T +S +A+ G G XXXXXXXXXXX GR PP PA RRAVVRRLYDP GDLLDEALVLWMPGPR
Sbjct: 24 SPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSA--TTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR 140
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.480e-14 Identity = 50/107 (46.73%), Postives = 56/107 (52.34%), Query Frame = 2
Query: 710 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
DTIFALS+G +G AGVAV+RVSGP + L L + G P + RRA VRRLYDPV GDLLDEALVLWMPGPR
Sbjct: 4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEA--------------------------------RRAAVRRLYDPVKGDLLDEALVLWMPGPR 78
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A0G4EE61_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE61_VITBC) HSP 1 Score: 82.4 bits (202), Expect = 1.410e-13 Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 2
Query: 599 LTATRLHPAQQHRRELTYSSSSGGDNAPRSPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
L++ LH QQ + SS G +A +DTI+ALS+G SG AGVAV+R+SGP S +L+ LT TR S++ PLP PR+AV+RR+YDP+ G+LLD+ LV+W P P
Sbjct: 49 LSSDALHRVQQGHASSSLEESSIGQDA--------ADDTIYALSSG-SGKAGVAVIRISGPLSPLILQLLTTDPSTRPCSSSSSNAIPYHGLR-----------------PLPPPRQAVLRRIYDPLVGELLDQGLVMWFPSPH 166
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05) HSP 1 Score: 71.2 bits (173), Expect = 5.980e-12 Identity = 45/107 (42.06%), Postives = 58/107 (54.21%), Query Frame = 2
Query: 710 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
DTI+A+S+G +G AG+AVVRVSGP + + + ALT S LPA RRAVVR+L DP GDLLD+A+VLW+PGP+
Sbjct: 5 DTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGS--------------------------------------LPASRRAVVRKLGDPATGDLLDQAVVLWLPGPQ 72
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A258GN67_9PROT (tRNA modification GTPase MnmE n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258GN67_9PROT) HSP 1 Score: 75.1 bits (183), Expect = 3.020e-11 Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 2
Query: 677 APRSPKQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 1027
APR P DTI AL++G SG AGVAV+R SGP SA V+ ALT R ++P D G + +P LP PR+A VR+L+D AG LDEAL+LWMPGP
Sbjct: 3 APRGPT-----DTIIALASG-SGRAGVAVIRASGPGSAGVIRALT-----RANQPYPGDSSGPTGSEGALDPADVSRETPQPQS-LPQPRKAAVRKLFDE-AGGFLDEALILWMPGP 106
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A7S4DLF8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLF8_HETAK) HSP 1 Score: 71.6 bits (174), Expect = 1.460e-10 Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 2
Query: 710 DTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
DTI+ALS+G+ AGVA++R+SGPR+ +VLE LT + PP G +P PR A +R+++DP +LLDE+LVLW PGP+
Sbjct: 95 DTIYALSSGHGVVAGVAIIRISGPRAQEVLEQLT-------APPPDTHQFAKGK--------------------IPTPRMACMRKIFDPETKELLDESLVLWFPGPK 174
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: A0A395LN76_9SPHN (tRNA modification GTPase MnmE n=2 Tax=Alteriqipengyuania lutimaris TaxID=1538146 RepID=A0A395LN76_9SPHN) HSP 1 Score: 70.9 bits (172), Expect = 6.670e-10 Identity = 51/111 (45.95%), Postives = 56/111 (50.45%), Query Frame = 2
Query: 698 TSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGPR 1030
T DTIFALS+G S P GVAV+RVSGPR+ Q LE LT S LP RRA VR++ DP AG LDEALVLWMPGPR
Sbjct: 3 TDPRDTIFALSSG-SPPCGVAVIRVSGPRAGQALETLTGS--------------------------------------LPEQRRASVRQVVDPQAG-WLDEALVLWMPGPR 73
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: X5MLT6_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MLT6_9HYPH) HSP 1 Score: 68.9 bits (167), Expect = 2.980e-9 Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 2
Query: 707 EDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 1027
+DT+FALS+G G AG+AV+R+SGP +A L AL+ G LP+PR+AVVRRL DP + LD+ALVLW+PGP
Sbjct: 2 DDTVFALSSGQ-GRAGIAVIRISGPHAADALTALS-------------------------------------GTDLPSPRKAVVRRLTDPRTDEQLDQALVLWLPGP 70
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Match: UPI00056EA609 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00056EA609) HSP 1 Score: 68.6 bits (166), Expect = 4.190e-9 Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 2
Query: 692 KQTSQEDTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTMSAGTRVSRPPSADGEGVGXXXXXXXXXXXXXDRGRPGPPLPAPRRAVVRRLYDPVAGDLLDEALVLWMPGP 1027
+Q + DTIFALSTG G A +AV+R+SGPR+ VL +LT G LP R+AVVR + DP G+++DEALVLW PGP
Sbjct: 2 QQDRERDTIFALSTGQ-GAAAIAVIRISGPRAGDVLRSLT-------------------------------------GRNLPEARKAVVRSIRDPETGEVVDEALVLWFPGP 75 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101339.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig101339.106.1 >prot_F-distichus_contig101339.106.1 ID=prot_F-distichus_contig101339.106.1|Name=mRNA_F-distichus_contig101339.106.1|organism=Fucus distichus monoicous|type=polypeptide|length=338bp MRTDLVQLSPVRLLAVFLLSLQETVCLVTNRGGGVAAPRRTTAFSPKTFSback to top mRNA from alignment at F-distichus_contig101339:575..1604+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig101339.106.1 ID=mRNA_F-distichus_contig101339.106.1|Name=mRNA_F-distichus_contig101339.106.1|organism=Fucus distichus monoicous|type=mRNA|length=1030bp|location=Sequence derived from alignment at F-distichus_contig101339:575..1604+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig101339:575..1604+ >mRNA_F-distichus_contig101339.106.1 ID=mRNA_F-distichus_contig101339.106.1|Name=mRNA_F-distichus_contig101339.106.1|organism=Fucus distichus monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at F-distichus_contig101339:575..1604+ (Fucus distichus monoicous)back to top |