mRNA_F-distichus_contig9921.19360.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9921.19360.1
Unique NamemRNA_F-distichus_contig9921.19360.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9921.19360.1 vs. uniprot
Match: D7G1M2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 9.140e-34
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 3 
Query:    3 EEINFSQNEDSASHVAALRVQDMTLAAARVALRKIRTDLCSSLGVEGSGGKGNKGDAHLEASLVILSSATASALHLSELLLPVRAMETLLTIDFAEPVRTDASQAERISNDSGIASA---LGLLEGSSLPLVVHDEALHAWLVQQNDRRIED 449
            EE NFSQ+E S SH AALRVQDMTLAA R ALRK+R +L  S   EGSG            S+VIL+SAT +A HL ELLLPVRA+ETLL++DF+ PV+TD    ++++      +A   LGLL G S P+V+  +AL  WLVQ +D + +D
Sbjct:   90 EERNFSQDERSVSHSAALRVQDMTLAAGRAALRKLRAELRHSGDGEGSG------------SVVILASATTNAQHLGELLLPVRAIETLLSLDFSRPVKTDVGLGQQLAVGDAAGAAVEGLGLLPGGSSPIVITGDALEDWLVQPDDVKGQD 229
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BLAST of mRNA_F-distichus_contig9921.19360.1 vs. uniprot
Match: A0A835YY85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY85_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-5
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 3 
Query:   21 QNEDSASHVAALRVQDMTLAAARVALRKIRTDLCSSLGVEGSGGKGNKGDAHLEASLVILSSATASALHLSELLLPVRAMETLLTID 281
            QN++S SH +ALRVQDMTLAA RVALR++   L +    EG               LVIL+S    +  L E+LLPV  ++ LL +D
Sbjct:  157 QNDESTSHESALRVQDMTLAAVRVALRQLLPKLQAGGQYEGQ-------------DLVILASCRRGSQPLQEILLPVNRIKLLLMLD 230
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9921.19360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1M2_ECTSI9.140e-3451.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YY85_9STRA1.010e-543.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9921contigF-distichus_contig9921:1224..2592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size487
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9921.19360.1prot_F-distichus_contig9921.19360.1Fucus distichus monoicouspolypeptideF-distichus_contig9921 1860..2557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4524608-UTR-F-distichus_contig9921:1223..12881622931173.4524608-UTR-F-distichus_contig9921:1223..1288Fucus distichus monoicousUTRF-distichus_contig9921 1224..1288 +
1690886190.0763433-UTR-F-distichus_contig9921:1223..12881690886190.0763433-UTR-F-distichus_contig9921:1223..1288Fucus distichus monoicousUTRF-distichus_contig9921 1224..1288 +
1622931173.4694445-UTR-F-distichus_contig9921:1856..18591622931173.4694445-UTR-F-distichus_contig9921:1856..1859Fucus distichus monoicousUTRF-distichus_contig9921 1857..1859 +
1690886190.0896335-UTR-F-distichus_contig9921:1856..18591690886190.0896335-UTR-F-distichus_contig9921:1856..1859Fucus distichus monoicousUTRF-distichus_contig9921 1857..1859 +
1622931173.5332372-UTR-F-distichus_contig9921:2557..25921622931173.5332372-UTR-F-distichus_contig9921:2557..2592Fucus distichus monoicousUTRF-distichus_contig9921 2558..2592 +
1690886190.1348476-UTR-F-distichus_contig9921:2557..25921690886190.1348476-UTR-F-distichus_contig9921:2557..2592Fucus distichus monoicousUTRF-distichus_contig9921 2558..2592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4873629-CDS-F-distichus_contig9921:1859..20451622931173.4873629-CDS-F-distichus_contig9921:1859..2045Fucus distichus monoicousCDSF-distichus_contig9921 1860..2045 +
1690886190.1008253-CDS-F-distichus_contig9921:1859..20451690886190.1008253-CDS-F-distichus_contig9921:1859..2045Fucus distichus monoicousCDSF-distichus_contig9921 1860..2045 +
1622931173.511863-CDS-F-distichus_contig9921:2359..25571622931173.511863-CDS-F-distichus_contig9921:2359..2557Fucus distichus monoicousCDSF-distichus_contig9921 2360..2557 +
1690886190.1186671-CDS-F-distichus_contig9921:2359..25571690886190.1186671-CDS-F-distichus_contig9921:2359..2557Fucus distichus monoicousCDSF-distichus_contig9921 2360..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9921.19360.1

>prot_F-distichus_contig9921.19360.1 ID=prot_F-distichus_contig9921.19360.1|Name=mRNA_F-distichus_contig9921.19360.1|organism=Fucus distichus monoicous|type=polypeptide|length=128bp
MTLAAARVALRKIRTDLCSSLGVEGSGGKGNKGDAHLEASLVILSSATAS
ALHLSELLLPVRAMETLLTIDFAEPVRTDASQAERISNDSGIASALGLLE
GSSLPLVVHDEALHAWLVQQNDRRIED*
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mRNA from alignment at F-distichus_contig9921:1224..2592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9921.19360.1 ID=mRNA_F-distichus_contig9921.19360.1|Name=mRNA_F-distichus_contig9921.19360.1|organism=Fucus distichus monoicous|type=mRNA|length=1369bp|location=Sequence derived from alignment at F-distichus_contig9921:1224..2592+ (Fucus distichus monoicous)
TCGAGGAGATCAACTTTTCCCAGAACGAGGATAGCGCGTCCCATGTCGCC
GCTCTGCGGGTGCAAGTGAGTCAAGCGCTTCCAGCTCTGTTGGTCCGACC
GCTCGCTTTTCTTATAGTTCCCTGGCGGCTGGATGGATTACATGCGGAGT
ACACAGTATTATGTCGCTCTGTTTCCCTCCCCCCCCACAAGGTGTAATAT
CCTCCAGTTCTGAATCTGCCATCGCTACGCGGGATTGTGACCCCGGGCAA
TAGAGCGCGGCAAAGAATGACGCCCTCGGCTGCGACGCGCACCCCCGCCG
GGGTCGATTGTAAATCACTCGCGCGCTCGAACATGTCAGCGCATCGCATT
CCGTACGCAGTACAACTTTGCGAAGCGTCGAGATATCAGATCTTTTTCAA
AGGGTTGAAATACTTCCGTGAACGGGGCAGACAGACTCGTACACGAATCC
TTCATAAAAGGTAGGTGGGGTATTTTAGTTTTGCAAGGGTCGCGGTCAGC
TATCGCAGACTTGATCGGGACATTGAAAATATAGTGGTGGCTCGTAGGGA
GAGAGGTAGTTGAGAGGAGCAAGGGCATGACATCGTGTGAGCATTCCTCG
CACTATCACCTTCCTCCTACCGCGTCACATCAGGATATGACGCTTGCCGC
GGCTAGAGTAGCGCTCCGAAAGATCAGAACTGATCTATGTTCATCTCTGG
GCGTCGAGGGGAGCGGTGGCAAGGGCAATAAGGGCGACGCGCATTTGGAG
GCGAGCTTGGTGATTTTATCCTCGGCAACGGCAAGCGCCTTACATCTCAG
CGAACTCCTGCTCCCTGTTCGGGTGCGCCCTCTCCGTCAGCATCTCGGAA
AAGCCAAGATAGGGACTGTTGGTCGTAACTTTAGCGATCGATCAGATTAG
ACTAAATAACGCACAGCGAAACCGGGAGCGATATTTTGCGTGTGTGTTTT
TGCGGCCTCTTCCGCCGGTCCGTTGGTACTAGGTGGTTTCGTTTCCTACA
TTATGTTTGTAGAACCCAGATACAGTACTAATTCATATCCCACCACGACA
CATGTTGATGTTCACGCGGCATACCTGAAGAACGTGTTCCCTCTTTCCTG
TAGATATACAAACACAATACCCTTTGCGCCGCGCAGGCAATGGAAACCCT
GCTGACCATCGATTTCGCTGAGCCGGTACGCACGGACGCATCGCAAGCAG
AGAGGATATCGAACGACTCCGGAATCGCAAGCGCTCTCGGGTTGCTGGAG
GGCTCCTCCTTGCCTCTCGTCGTTCACGACGAGGCCCTCCACGCTTGGCT
CGTGCAGCAAAACGACCGACGAATCGAGGACTAAGAGGCTTTGCTGTCGC
TCTCTGGTTATATTGAGCA
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Coding sequence (CDS) from alignment at F-distichus_contig9921:1224..2592+

>mRNA_F-distichus_contig9921.19360.1 ID=mRNA_F-distichus_contig9921.19360.1|Name=mRNA_F-distichus_contig9921.19360.1|organism=Fucus distichus monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at F-distichus_contig9921:1224..2592+ (Fucus distichus monoicous)
ATGACGCTTGCCGCGGCTAGAGTAGCGCTCCGAAAGATCAGAACTGATCT
ATGTTCATCTCTGGGCGTCGAGGGGAGCGGTGGCAAGGGCAATAAGGGCG
ACGCGCATTTGGAGGCGAGCTTGGTGATTTTATCCTCGGCAACGGCAAGC
GCCTTACATCTCAGCGAACTCCTGCTCCCTGTTCGGATGACGCTTGCCGC
GGCTAGAGTAGCGCTCCGAAAGATCAGAACTGATCTATGTTCATCTCTGG
GCGTCGAGGGGAGCGGTGGCAAGGGCAATAAGGGCGACGCGCATTTGGAG
GCGAGCTTGGTGATTTTATCCTCGGCAACGGCAAGCGCCTTACATCTCAG
CGAACTCCTGCTCCCTGTTCGGGCAATGGAAACCCTGCTGACCATCGATT
TCGCTGAGCCGGTACGCACGGACGCATCGCAAGCAGAGAGGATATCGAAC
GACTCCGGAATCGCAAGCGCTCTCGGGTTGCTGGAGGGCTCCTCCTTGCC
TCTCGTCGTTCACGACGAGGCCCTCCACGCTTGGCTCGTGCAGCAAAACG
ACCGACGAATCGAGGACTAAGCAATGGAAACCCTGCTGACCATCGATTTC
GCTGAGCCGGTACGCACGGACGCATCGCAAGCAGAGAGGATATCGAACGA
CTCCGGAATCGCAAGCGCTCTCGGGTTGCTGGAGGGCTCCTCCTTGCCTC
TCGTCGTTCACGACGAGGCCCTCCACGCTTGGCTCGTGCAGCAAAACGAC
CGACGAATCGAGGACTAA
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