mRNA_F-distichus_contig98658.19300.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98658.19300.1
Unique NamemRNA_F-distichus_contig98658.19300.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: D7FH71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH71_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 9.870e-40
Identity = 84/149 (56.38%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 DLSAFLCSDQDASGAGASCVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTLDLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQK--------EQPEGTVGSSGSPCCDNGT 423
            D +  L   Q A+ A   C+LFLF+ A VDT+ KYA A +GAFCMGFANEMIRY R  M + A    V  D+  TFAFAVQM +AY LMLLVMLYEYV LIMII GL+ GHLVTLRL+AG++        ++  G  GSSG+PCC++ T
Sbjct:   57 DGTVMLMGFQAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRMAK-ASGVCVGSDVKATFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSGTPCCNSAT 204          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: D7FWU3_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWU3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.790e-36
Identity = 80/150 (53.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 DLSAFLCSDQDASGAGASCVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTLDLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQK---------EQPEGTVGSSGSPCCDNGT 423
            D +  L   Q A+ A  +C+LFLF+ A VDT+ KYA A +GAF MGFANEMIRY R  M + + D S+  DL  T AFAVQ+ +AY LMLLVMLYEYV LIMII GL+ GHL+TLR +AG++         + P   +GSSG+PCC+  T
Sbjct:   30 DGTVMLMGFQSATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRMAKTS-DVSLASDLKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDT 178          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A9UVZ5_MONBE (Copper transport protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UVZ5_MONBE)

HSP 1 Score: 88.2 bits (217), Expect = 5.440e-19
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTLDLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRL 351
            C +FLF + V+DT  KYAIA+IG FCMG  NE+ R++R  +      + +  DL    ++ + ML AYFLMLLVMLYE +F +MIILGL+ G  V  +L
Sbjct:   33 CPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFRWYRNRLEAQESTRPILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQL 131          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A819CUJ2_9BILA (Copper transport protein n=8 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819CUJ2_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 7.290e-11
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTL--DLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQKEQPEGTVGS----------SGSPCCDNG 420
            C++FLF+   VD   KYA  ++G FCMG  N  + Y R  +    R+ S  L   +     + VQ+++AY++MLLVM YE    I +ILGL +G+ +   + A  K +P   + S          S +PCC+ G
Sbjct:   20 CIVFLFRGWNVDNHVKYAFMILGVFCMGLLNGALAYIRHRINDSYREHSSLLLHQIYLALIYGVQIVLAYWMMLLVMTYESGIFISLILGLVIGYFIFGYIQA--KNRPLNKIISGNNSTYENRFSNTPCCETG 151          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A819B819_9BILA (Copper transport protein n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A819B819_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 8.240e-11
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTL--DLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQKE----QPEGTVGS-----SGSPCC 411
            C+LFLFQ   VDT  KYA  +IG  CMG  N  + Y R  +   ++  S  L   +  +  +A+Q+++AY++MLLVM YE    I +I GL +GH +   + A  +     QPE T  +     + +PCC
Sbjct:   26 CILFLFQGWNVDTHVKYAFMLIGVICMGLLNGALAYIRHCLVNNSKHTSSLLIHQIYLSLLYAIQIVLAYWMMLLVMTYETGIFISLIGGLVLGHFIFGYIEAKNRSSTSIQPETTNTTFQNQFNSTPCC 155          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A835YQY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.460e-10
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   52 SCVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTLDLMRTFAFAV-QMLIAYFLMLLVMLYEYVFLIMIILGLSVGH 333
            SCV++LF  A++DTE KYA AVIG F + F NE +R+ R  M   A           + A +V QM+ AY+LMLL MLYE V   MI+LGL  G+
Sbjct:   49 SCVIWLFPGAILDTEGKYAAAVIGTFLLAFGNEGLRWLRTRMA--AEQAPPXXXXXPSLALSVAQMVNAYWLMLLTMLYESVMFSMIVLGLMAGY 141          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A815NM06_9BILA (Copper transport protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815NM06_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 1.070e-9
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTL--DLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQKE----QPEGTVGS-----SGSPCC 411
            C+LFLFQ   VDT  KYA  +IG  CMG  N  + Y R  +   ++  S      +  +  +A+Q+++AY++MLLVM YE    I +I GL +GH +   + A  +     QPE T  +     + +PCC
Sbjct:  302 CILFLFQGWNVDTHVKYAFMLIGVICMGLLNGALAYVRHCLVNNSKHTSSLFIHQIYLSLLYAIQIVLAYWMMLLVMTYETGIFISLICGLVLGHFIFGYIEAKNRSSTSIQPETTNTTFQNQFNSTPCC 431          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A835YUT5_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.290e-9
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRG-------------ARDKSVTLDLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHL 336
            C+++LF+ AV+DT  KY  AVIG F + FANE IR+ R     G             A  + V L LM  F    QMLIAY+LML+VM YE      I+LGL+ G+L
Sbjct:   44 CIIWLFEGAVLDTAGKYTGAVIGTFLLAFANEGIRWLRSRAMSGKAPFTRCHLSDMPAFARDVVLALMYGF----QMLIAYWLMLIVMTYEVFLFTAILLGLTAGYL 146          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A0L0D9P1_THETB (Copper transport protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9P1_THETB)

HSP 1 Score: 63.2 bits (152), Expect = 3.250e-9
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   46 GASCVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVT----------------------LDLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLVTLRLAAGQKEQPEGTVGSS 396
            G SC+L+LFQ AVVDT  KYA+A IG+F +  A   ++  R  +   A  +S +                      LDL     FA+QM++AY++MLLVMLYE      II+G  V  L+ +RL    +E+  G   SS
Sbjct:   26 GNSCILWLFQGAVVDTPGKYALACIGSFSLVLAMVFLQLVRERVSLWASRRSSSXXXXXXXXXXPSLCSGGLPMLGLDLAVAALFALQMVLAYWIMLLVMLYEAWIFTSIIIGFFVSQLLAIRLRRRWRERTCGCPSSS 164          
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Match: A0A819HB45_9BILA (Copper transport protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819HB45_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-8
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   55 CVLFLFQSAVVDTEAKYAIAVIGAFCMGFANEMIRYWRGVMGRGARDKSVTL--DLMRTFAFAVQMLIAYFLMLLVMLYEYVFLIMIILGLSVGHLV 339
            C++FLF    V+   KYA+ ++G FCMG  N  + Y R  +    R+ S  L   +     + +Q+++AY++MLLVM YE    I +I GL +G+ +
Sbjct:   20 CIVFLFHGWNVNNHVKYAVMIVGIFCMGLLNGALAYIRHRLNENTRENSSLLLNQIYLALVYGIQIVLAYWIMLLVMTYESGSFISLIFGLVIGYFI 116          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98658.19300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH71_ECTSI9.870e-4056.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWU3_ECTSI2.790e-3653.33Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
A9UVZ5_MONBE5.440e-1948.48Copper transport protein n=1 Tax=Monosiga brevicol... [more]
A0A819CUJ2_9BILA7.290e-1134.33Copper transport protein n=8 Tax=Rotaria sp. Silwo... [more]
A0A819B819_9BILA8.240e-1136.15Copper transport protein n=7 Tax=Adineta steineri ... [more]
A0A835YQY3_9STRA3.460e-1047.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A815NM06_9BILA1.070e-935.38Copper transport protein n=1 Tax=Adineta steineri ... [more]
A0A835YUT5_9STRA2.290e-943.93Copper transport protein n=1 Tax=Tribonema minus T... [more]
A0A0L0D9P1_THETB3.250e-936.69Copper transport protein n=1 Tax=Thecamonas trahen... [more]
A0A819HB45_9BILA1.110e-835.05Copper transport protein n=1 Tax=Rotaria sp. Silwo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98658contigF-distichus_contig98658:189..1887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.6e-19
Seed eggNOG ortholog2880.D7FH71
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ctr copper transporter family
EggNOG OGs2E44A@1,2SB2P@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size492
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98658.19300.1prot_F-distichus_contig98658.19300.1Fucus distichus monoicouspolypeptideF-distichus_contig98658 321..1824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.631283-UTR-F-distichus_contig98658:188..3201622931165.631283-UTR-F-distichus_contig98658:188..320Fucus distichus monoicousUTRF-distichus_contig98658 189..320 +
1690886186.7628078-UTR-F-distichus_contig98658:188..3201690886186.7628078-UTR-F-distichus_contig98658:188..320Fucus distichus monoicousUTRF-distichus_contig98658 189..320 +
1622931165.7025523-UTR-F-distichus_contig98658:1824..18871622931165.7025523-UTR-F-distichus_contig98658:1824..1887Fucus distichus monoicousUTRF-distichus_contig98658 1825..1887 +
1690886186.8154557-UTR-F-distichus_contig98658:1824..18871690886186.8154557-UTR-F-distichus_contig98658:1824..1887Fucus distichus monoicousUTRF-distichus_contig98658 1825..1887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.6470912-CDS-F-distichus_contig98658:320..3461622931165.6470912-CDS-F-distichus_contig98658:320..346Fucus distichus monoicousCDSF-distichus_contig98658 321..346 +
1690886186.7808785-CDS-F-distichus_contig98658:320..3461690886186.7808785-CDS-F-distichus_contig98658:320..346Fucus distichus monoicousCDSF-distichus_contig98658 321..346 +
1622931165.6640043-CDS-F-distichus_contig98658:1019..11281622931165.6640043-CDS-F-distichus_contig98658:1019..1128Fucus distichus monoicousCDSF-distichus_contig98658 1020..1128 +
1690886186.797011-CDS-F-distichus_contig98658:1019..11281690886186.797011-CDS-F-distichus_contig98658:1019..1128Fucus distichus monoicousCDSF-distichus_contig98658 1020..1128 +
1622931165.6814277-CDS-F-distichus_contig98658:1662..18241622931165.6814277-CDS-F-distichus_contig98658:1662..1824Fucus distichus monoicousCDSF-distichus_contig98658 1663..1824 +
1690886186.806888-CDS-F-distichus_contig98658:1662..18241690886186.806888-CDS-F-distichus_contig98658:1662..1824Fucus distichus monoicousCDSF-distichus_contig98658 1663..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98658.19300.1

>prot_F-distichus_contig98658.19300.1 ID=prot_F-distichus_contig98658.19300.1|Name=mRNA_F-distichus_contig98658.19300.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
MGFANEMIRYWRGVMGRGARDKSVTLDLMRTFAFAVQMLIAYFLMLLVML
YEYVFLIMIILGLSVGHLVTLRLAAGQKEQPEGTVGSSGSPCCDNGTA*
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mRNA from alignment at F-distichus_contig98658:189..1887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98658.19300.1 ID=mRNA_F-distichus_contig98658.19300.1|Name=mRNA_F-distichus_contig98658.19300.1|organism=Fucus distichus monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at F-distichus_contig98658:189..1887+ (Fucus distichus monoicous)
GATCTGTCTGCTTTTTTGTGTTCTGATCAGGACGCGTCGGGCGCGGGCGC GAGTTGTGTTCTCTTCCTTTTCCAAAGCGCGGTCGTCGACACCGAGGCTA AGTATGCGATCGCCGTGATCGGCGCCTTCTGCATGGGCTTCGCGAACGAA ATGATCAGGTAAAATAATAGTAACTGGGGCCTTGATGCAGACGCAGTCCG ATGATCGATCCGAATCATGAAGTGGTCCGCTGCGTTTGTAAAAAGTCACT GACGATCACCACAGAGTAAAACTTTACTACGGTGTATCCGGTACCGAAGC GGGGTAGTCAGATGAAATACTATCAATAAGATCAGGTTGAGAAGTGTACT AAATATAGTATACTGCTTAATGAGAGTGAGTGGATCCGTGCGTTCCCGTT TTTAAGGCGTCGTTAGCCCTTTGGAACACATTGGAACATATTTTATTAAC GGATACAAGTAGGTGGGTCAGGATATTTCAACCTGGCTCGTACCGACATG CGGTAAGTTGAAAAAAGCTATGTTGTACCATTGGCGCGACGGGATTCAAA ACCAGTCCTACCGTCGACGCCATTATTAGATCACAGGGGAGGGGTGGTGA AAGGGATCGCCACAGATTGTTGGTTGCACATGGGTGCTCAATTTTATGTG TAGCGTGTATGTATTACGTGTTGATTGAACTGCACATAAGCTCGCAATTG ATTTCATGTGCAGCGTGTATGTCCGTGTTAATTGAACTGCACGAAATAAG CTCGCAATCCAATCGTCATGTGCTCATCAATCGACGTGACTCATGTGTGT TTCGTTTCTCTGTGTTTGGCGGTGGCCGCAGGTACTGGCGTGGCGTGATG GGCAGGGGCGCGAGAGACAAGAGTGTGACCCTCGACCTCATGAGAACCTT TGCATTCGCGGTGCAGATGTTGATTGCCTACTTCCTCATGGTGAGCGGAA CCGATAGAGGCAGGGATATGCTGTATATACTTCGTATACTTTATATATAT ATGCTGTATGCGGCACGGCGTGTCGTCGGTAGCCTGATGTTGATATCACG CGCGGCACCACACAACAAACGTTGTAGACTCTTTATAATTTTAATACCTG GTAGTAACATGAGAGTAGACTACAATAATAGTAGTGACTCGTATATTTTT TACTCAACGGTAGGGGGTGTGGGAGGGAGAGACTTGCGGTATCTTGAAGG GGATGGGGGGGGGTACGACGGACGCCGTGTGCAACACCCCCCCCGTTCGG GCTCTACAGCTGGTACTACAACACTTTCGTAGCGCTACTATTGATATTAA ATACTGATACTACGGCACTACGGCGGTTTGTTGTGCCACCCTCAAGAGAC GCCATGTACAGCAACGTGGGTCGCGACCGCTGCCCGCCGCCGCTGCAGCC TGCTCGTTCGTGTCATAACAACTACGAATATATATAATATTATATAATCG TTTCATCCTTGCCGCCCCGCCCAGCTTCTGGTGATGCTCTACGAGTACGT GTTCCTCATCATGATCATCCTGGGTCTCTCGGTGGGTCACCTTGTCACGC TAAGGCTCGCAGCTGGCCAGAAGGAGCAGCCGGAAGGGACAGTAGGGAGT TCGGGATCGCCTTGCTGCGACAACGGCACCGCTTGAGCGTTTTTTTTGCT TTTGTTTTCTGTAGTGACGGGGCGACGAAGAATGTTGGTGCTGCTCGTT
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Coding sequence (CDS) from alignment at F-distichus_contig98658:189..1887+

>mRNA_F-distichus_contig98658.19300.1 ID=mRNA_F-distichus_contig98658.19300.1|Name=mRNA_F-distichus_contig98658.19300.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig98658:189..1887+ (Fucus distichus monoicous)
ATGGGCTTCGCGAACGAAATGATCAGATGGGCTTCGCGAACGAAATGATC
AGGTACTGGCGTGGCGTGATGGGCAGGGGCGCGAGAGACAAGAGTGTGAC
CCTCGACCTCATGAGAACCTTTGCATTCGCGGTGCAGATGTTGATTGCCT
ACTTCCTCATGGTACTGGCGTGGCGTGATGGGCAGGGGCGCGAGAGACAA
GAGTGTGACCCTCGACCTCATGAGAACCTTTGCATTCGCGGTGCAGATGT
TGATTGCCTACTTCCTCATGCTTCTGGTGATGCTCTACGAGTACGTGTTC
CTCATCATGATCATCCTGGGTCTCTCGGTGGGTCACCTTGTCACGCTAAG
GCTCGCAGCTGGCCAGAAGGAGCAGCCGGAAGGGACAGTAGGGAGTTCGG
GATCGCCTTGCTGCGACAACGGCACCGCTTGACTTCTGGTGATGCTCTAC
GAGTACGTGTTCCTCATCATGATCATCCTGGGTCTCTCGGTGGGTCACCT
TGTCACGCTAAGGCTCGCAGCTGGCCAGAAGGAGCAGCCGGAAGGGACAG
TAGGGAGTTCGGGATCGCCTTGCTGCGACAACGGCACCGCTTGA
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