mRNA_F-distichus_contig9807.19243.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9807.19243.1
Unique NamemRNA_F-distichus_contig9807.19243.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.350e-57
Identity = 114/248 (45.97%), Postives = 140/248 (56.45%), Query Frame = 1
Query:    1 RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGS-----SSKDTHASRRPFLPEVPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEV------------VAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
            R+S +R DL+ARG RP VILGGDLNS P GPVRYL+G+L+GPDSDLW N+  F+WGDRFF+E                            S   P  ++A  N   + +     S   + A   PFLP VPYLR    L+LASG PAFTNFTP+FT+TLDYVFI        +  GA+ G        ++  +GA                  VAPMPEE  LRA TPG+P+ETFPSDHVSLVVDL++
Sbjct:  478 RISRVRKDLLARGLRPAVILGGDLNSPPDGPVRYLMGDLIGPDSDLWENMGTFKWGDRFFDELPTTSGXXXXXXXXXXXXXXSRIPDEKASTASPRPNNATNNNDNETARASHPSVAGSKAKPSPFLPNVPYLRTPFDLQLASGTPAFTNFTPDFTDTLDYVFI--------EGAGADSGTPTTAAEAVLAVEGAXXXXXXXXXXXXXXXXXXVAPMPEEGPLRATTPGLPSETFPSDHVSLVVDLAL 717          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.370e-42
Identity = 88/177 (49.72%), Postives = 104/177 (58.76%), Query Frame = 1
Query:    1 RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIV--SATSLVPPGDDHALRNGSGQGS-----SSKDTHASRRPFLPEVPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRT 510
            R+S +R DL+ARG RP V+LGGDLNSTP GPVRYL+G+L+GPDSDLW NV  F+WGDRFF+E                      S +     S   P  ++A  N   + +     S   + A   PFL  VP LR  L L+LASG PAFTNFTPEFTETLDYVFI G G   G  T
Sbjct:  648 RISRVRKDLLARGLRPAVVLGGDLNSTPGGPVRYLMGDLIGPDSDLWENVGTFKWGDRFFDELPTTSGAXXXXXXXXXXXXSPTSRIPDGKASTASPRPNNATNNNDNETTRASHHSVAGSKAKPSPFLRNVPCLRTPLDLQLASGTPAFTNFTPEFTETLDYVFIEGAGADNGAPT 824          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A836CIF3_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.240e-20
Identity = 70/234 (29.91%), Postives = 100/234 (42.74%), Query Frame = 1
Query:    4 VSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPE------VPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDL 687
            V  +R  L++ G   GV++ GD+NSTP   +RYL G+ +  +  +WR+V AFRWG+R+F+  SA    A      +                                              E      +P + L L L  ASG+P +TNFTP FT+TLDY+F                     +T           E    AP+P EA LRA+T G+P   +PSDHV++V D+
Sbjct:  562 VQGIRERLLSEGQEVGVVVCGDMNSTPLTAIRYLEGDTLSAEHAVWRHVRAFRWGERYFK--SAKAKVAAEDGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPVSAIPTVALPLPLTNASGYPPYTNFTPAFTDTLDYIFA--------------------DTDSF--------EAVSSAPVPPEAELRAITVGLPYRGYPSDHVAVVADI 765          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: K8YU24_NANGC (2-phosphodiesterase 12-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YU24_NANGC)

HSP 1 Score: 75.5 bits (184), Expect = 2.510e-12
Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query:   37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
            G RP ++L GDLNSTP+   +RYL GE +GP+ ++W ++  F WG R  E E       A   A +  ++ +             GD  A+    G+ S  ++T  S R   P V                         P L L      A G P FTN+   F ETLDY+F+                    E PV +   GA      V  MP  EEA        +P+   PSDHVS++ D+ V
Sbjct:  127 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDDGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQAPSDHVSILCDVRV 345          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: W7T5B9_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5B9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.600e-12
Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query:   37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
            G RP ++L GDLNSTP+   +RYL GE +GP+ ++W ++  F WG R  E E       A   A +  ++ +             GD  A+    G+ S  ++T  S R   P V                         P L L      A G P FTN+   F ETLDY+F+                    E PV +   GA      V  MP  EEA        +P+   PSDHVS++ D+ V
Sbjct:   59 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDVGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQTPSDHVSILCDVRV 277          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: W7TNA6_9STRA (Endonuclease/exonuclease/phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.870e-12
Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query:   37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
            G RP ++L GDLNSTP+   +RYL GE +GP+ ++W ++  F WG R  E E       A   A +  ++ +             GD  A+    G+ S  ++T  S R   P V                         P L L      A G P FTN+   F ETLDY+F+                    E PV +   GA      V  MP  EEA        +P+   PSDHVS++ D+ V
Sbjct:  100 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDVGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQTPSDHVSILCDVRV 318          
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A026WF76_OOCBI (2',5'-phosphodiesterase n=2 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WF76_OOCBI)

HSP 1 Score: 54.3 bits (129), Expect = 6.310e-5
Identity = 35/104 (33.65%), Postives = 47/104 (45.19%), Query Frame = 1
Query:  382 LRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
            L   L +  A G P +TN+TPEF++ LDY+F   D                            + E E V PMP +  L   T G+P+  FPSDH+SL  DL +
Sbjct:  528 LTQDLRMSSACGTPEYTNYTPEFSDCLDYIFYEKD----------------------------KFEVEQVVPMPSKEELTLHT-GLPSVVFPSDHISLCADLKL 602          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYP3_ECTSI1.350e-5745.97Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JRV9_9PHAE3.370e-4249.72Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A836CIF3_9STRA2.240e-2029.91Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
K8YU24_NANGC2.510e-1229.442-phosphodiesterase 12-like protein n=1 Tax=Nannoc... [more]
W7T5B9_9STRA2.600e-1229.44Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
W7TNA6_9STRA3.870e-1229.44Endonuclease/exonuclease/phosphatase n=2 Tax=Monod... [more]
A0A026WF76_OOCBI6.310e-533.652',5'-phosphodiesterase n=2 Tax=Ooceraea biroi Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9807contigF-distichus_contig9807:211..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue1.4e-50
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Exons2
Model size702
Cds size702
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.2578638-CDS-F-distichus_contig9807:210..3741622931159.2578638-CDS-F-distichus_contig9807:210..374Fucus distichus monoicousCDSF-distichus_contig9807 211..374 +
1690886183.8011668-CDS-F-distichus_contig9807:210..3741690886183.8011668-CDS-F-distichus_contig9807:210..374Fucus distichus monoicousCDSF-distichus_contig9807 211..374 +
1622931159.28075-CDS-F-distichus_contig9807:949..14871622931159.28075-CDS-F-distichus_contig9807:949..1487Fucus distichus monoicousCDSF-distichus_contig9807 950..1487 +
1690886183.8128777-CDS-F-distichus_contig9807:949..14871690886183.8128777-CDS-F-distichus_contig9807:949..1487Fucus distichus monoicousCDSF-distichus_contig9807 950..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9807.19243.1prot_F-distichus_contig9807.19243.1Fucus distichus monoicouspolypeptideF-distichus_contig9807 211..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9807.19243.1

>prot_F-distichus_contig9807.19243.1 ID=prot_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=polypeptide|length=234bp
RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNV
DAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHA
LRNGSGQGSSSKDTHASRRPFLPEVPYLRLQLGLELASGFPAFTNFTPEF
TETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPM
PEEAMLRAMTPGIPAETFPSDHVSLVVDLSVLT*
back to top

mRNA from alignment at F-distichus_contig9807:211..1487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9807.19243.1 ID=mRNA_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=mRNA|length=1277bp|location=Sequence derived from alignment at F-distichus_contig9807:211..1487+ (Fucus distichus monoicous)
AGGGTCTCGTGCCTGCGAAATGATCTCATTGCACGAGGTTTTCGGCCTGG TGTGATCCTTGGCGGCGACCTGAACAGCACTCCCAGCGGGCCCGTGCGAT ATCTGTTGGGGGAGCTCGTCGGCCCGGACAGTGACCTGTGGCGTAATGTC GATGCGTTCCGGTGGTGAGCCTTTACCGTTCGATGCTTGTTTGTGATAGC ACCACTACCGAACAGGAGATGGTATGTGGAGGGGGGAAGAGATGAGCAAG GATTTGCACGGCGCAAAGCGTTCGGCGGAATCAAGCGCGAAGTCAGCGTC TAGGCCTGATCTGTTCACGGACACTTATGTTTGATACCACGACGTACATT TGTGCTGTACGAATTCACGTGTCCCTCGTTTTCTACGTCACGTCGGATAT AACTGTACACAAAACACATTAGTAGATGCAACTGAAACTTGGAAATACCA CAGACTGACTGGATAATACTTAGTGATGTGTGCCTTAGTTTTCCTCTCAA AATGTGAGAGTTTGCTCTGCTCACTGCTGGTGCGTGTGGTTGGTCCGGCC CCTCAACTAACCATGTGCAAGAGGTTGAGCACTTATCCGAACCCACATTT TTTTCTACGTGTCACAGCAGCGCACGATCCCCGACGAATATGAGCATTGG CAGAATGTATTCCCATATATTTTAACGATGGAGGACACCCGCTCTCTCCT GTCCGTCTAACGCTGATCCCCCCGACTCCTTCCAAATAGGGGCGATCGCT TCTTCGAGGAGTGTTCTGCGCCGAAATCGACAGCGCCTCACCAAGCACAG GTGACGGGAGACGACCTGGAAGTGAACTCGATCGTGAGTGCCACGTCGCT CGTGCCTCCGGGTGATGATCACGCCCTCAGAAACGGTTCTGGGCAGGGTT CATCGTCGAAGGATACGCACGCCTCGCGTCGGCCGTTCCTCCCTGAAGTG CCCTACCTGAGGCTTCAACTTGGGCTCGAGCTCGCCTCTGGGTTTCCCGC TTTCACCAATTTCACGCCAGAGTTCACGGAAACTCTTGACTACGTTTTCA TAGGAGGGGACGGCGGCGGCGGTGGCGACAGGACGGGTGCTAATGGGGGT GCATCAGGGCTGGAAACGCCAGTCATCGTGGTGGACAAGGGGGCACGCGG GGAGACGGAGGTGGTAGCGCCGATGCCGGAGGAGGCGATGTTGAGGGCGA TGACCCCGGGGATACCGGCTGAGACTTTTCCGTCCGATCATGTGTCGCTG GTCGTTGACCTTTCGGTTTTGACGTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9807:211..1487+

>mRNA_F-distichus_contig9807.19243.1 ID=mRNA_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at F-distichus_contig9807:211..1487+ (Fucus distichus monoicous)
AGGGTCTCGTGCCTGCGAAATGATCTCATTGCACGAGGTTTTCGGCCTGG
TGTGATCCTTGGCGGCGACCTGAACAGCACTCCCAGCGGGCCCGTGCGAT
ATCTGTTGGGGGAGCTCGTCGGCCCGGACAGTGACCTGTGGCGTAATGTC
GATGCGTTCCGGTGAGGGTCTCGTGCCTGCGAAATGATCTCATTGCACGA
GGTTTTCGGCCTGGTGTGATCCTTGGCGGCGACCTGAACAGCACTCCCAG
CGGGCCCGTGCGATATCTGTTGGGGGAGCTCGTCGGCCCGGACAGTGACC
TGTGGCGTAATGTCGATGCGTTCCGGTGGGGCGATCGCTTCTTCGAGGAG
TGTTCTGCGCCGAAATCGACAGCGCCTCACCAAGCACAGGTGACGGGAGA
CGACCTGGAAGTGAACTCGATCGTGAGTGCCACGTCGCTCGTGCCTCCGG
GTGATGATCACGCCCTCAGAAACGGTTCTGGGCAGGGTTCATCGTCGAAG
GATACGCACGCCTCGCGTCGGCCGTTCCTCCCTGAAGTGCCCTACCTGAG
GCTTCAACTTGGGCTCGAGCTCGCCTCTGGGTTTCCCGCTTTCACCAATT
TCACGCCAGAGTTCACGGAAACTCTTGACTACGTTTTCATAGGAGGGGAC
GGCGGCGGCGGTGGCGACAGGACGGGTGCTAATGGGGGTGCATCAGGGCT
GGAAACGCCAGTCATCGTGGTGGACAAGGGGGCACGCGGGGAGACGGAGG
TGGTAGCGCCGATGCCGGAGGAGGCGATGTTGAGGGCGATGACCCCGGGG
ATACCGGCTGAGACTTTTCCGTCCGATCATGTGTCGCTGGTCGTTGACCT
TTCGGTTTTGACGTGAGGGCGATCGCTTCTTCGAGGAGTGTTCTGCGCCG
AAATCGACAGCGCCTCACCAAGCACAGGTGACGGGAGACGACCTGGAAGT
GAACTCGATCGTGAGTGCCACGTCGCTCGTGCCTCCGGGTGATGATCACG
CCCTCAGAAACGGTTCTGGGCAGGGTTCATCGTCGAAGGATACGCACGCC
TCGCGTCGGCCGTTCCTCCCTGAAGTGCCCTACCTGAGGCTTCAACTTGG
GCTCGAGCTCGCCTCTGGGTTTCCCGCTTTCACCAATTTCACGCCAGAGT
TCACGGAAACTCTTGACTACGTTTTCATAGGAGGGGACGGCGGCGGCGGT
GGCGACAGGACGGGTGCTAATGGGGGTGCATCAGGGCTGGAAACGCCAGT
CATCGTGGTGGACAAGGGGGCACGCGGGGAGACGGAGGTGGTAGCGCCGA
TGCCGGAGGAGGCGATGTTGAGGGCGATGACCCCGGGGATACCGGCTGAG
ACTTTTCCGTCCGATCATGTGTCGCTGGTCGTTGACCTTTCGGTTTTGAC
GTGA
back to top