mRNA_F-distichus_contig9807.19243.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.350e-57 Identity = 114/248 (45.97%), Postives = 140/248 (56.45%), Query Frame = 1
Query: 1 RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGS-----SSKDTHASRRPFLPEVPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEV------------VAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
R+S +R DL+ARG RP VILGGDLNS P GPVRYL+G+L+GPDSDLW N+ F+WGDRFF+E S P ++A N + + S + A PFLP VPYLR L+LASG PAFTNFTP+FT+TLDYVFI + GA+ G ++ +GA VAPMPEE LRA TPG+P+ETFPSDHVSLVVDL++
Sbjct: 478 RISRVRKDLLARGLRPAVILGGDLNSPPDGPVRYLMGDLIGPDSDLWENMGTFKWGDRFFDELPTTSGXXXXXXXXXXXXXXSRIPDEKASTASPRPNNATNNNDNETARASHPSVAGSKAKPSPFLPNVPYLRTPFDLQLASGTPAFTNFTPDFTDTLDYVFI--------EGAGADSGTPTTAAEAVLAVEGAXXXXXXXXXXXXXXXXXXVAPMPEEGPLRATTPGLPSETFPSDHVSLVVDLAL 717
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.370e-42 Identity = 88/177 (49.72%), Postives = 104/177 (58.76%), Query Frame = 1
Query: 1 RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIV--SATSLVPPGDDHALRNGSGQGS-----SSKDTHASRRPFLPEVPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRT 510
R+S +R DL+ARG RP V+LGGDLNSTP GPVRYL+G+L+GPDSDLW NV F+WGDRFF+E S + S P ++A N + + S + A PFL VP LR L L+LASG PAFTNFTPEFTETLDYVFI G G G T
Sbjct: 648 RISRVRKDLLARGLRPAVVLGGDLNSTPGGPVRYLMGDLIGPDSDLWENVGTFKWGDRFFDELPTTSGAXXXXXXXXXXXXSPTSRIPDGKASTASPRPNNATNNNDNETTRASHHSVAGSKAKPSPFLRNVPCLRTPLDLQLASGTPAFTNFTPEFTETLDYVFIEGAGADNGAPT 824
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A836CIF3_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.240e-20 Identity = 70/234 (29.91%), Postives = 100/234 (42.74%), Query Frame = 1
Query: 4 VSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVDAFRWGDRFFEECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPE------VPYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDL 687
V +R L++ G GV++ GD+NSTP +RYL G+ + + +WR+V AFRWG+R+F+ SA A + E +P + L L L ASG+P +TNFTP FT+TLDY+F +T E AP+P EA LRA+T G+P +PSDHV++V D+
Sbjct: 562 VQGIRERLLSEGQEVGVVVCGDMNSTPLTAIRYLEGDTLSAEHAVWRHVRAFRWGERYFK--SAKAKVAAEDGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPVSAIPTVALPLPLTNASGYPPYTNFTPAFTDTLDYIFA--------------------DTDSF--------EAVSSAPVPPEAELRAITVGLPYRGYPSDHVAVVADI 765
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: K8YU24_NANGC (2-phosphodiesterase 12-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YU24_NANGC) HSP 1 Score: 75.5 bits (184), Expect = 2.510e-12 Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query: 37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
G RP ++L GDLNSTP+ +RYL GE +GP+ ++W ++ F WG R E E A A + ++ + GD A+ G+ S ++T S R P V P L L A G P FTN+ F ETLDY+F+ E PV + GA V MP EEA +P+ PSDHVS++ D+ V
Sbjct: 127 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDDGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQAPSDHVSILCDVRV 345
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: W7T5B9_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5B9_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.600e-12 Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query: 37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
G RP ++L GDLNSTP+ +RYL GE +GP+ ++W ++ F WG R E E A A + ++ + GD A+ G+ S ++T S R P V P L L A G P FTN+ F ETLDY+F+ E PV + GA V MP EEA +P+ PSDHVS++ D+ V
Sbjct: 59 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDVGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQTPSDHVSILCDVRV 277
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: W7TNA6_9STRA (Endonuclease/exonuclease/phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA6_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.870e-12 Identity = 73/248 (29.44%), Postives = 100/248 (40.32%), Query Frame = 1
Query: 37 GFRPGVILGGDLNSTPS-GPVRYLLGELVGPDSDLWRNVDAFRWGDRFFE-ECSAPKSTAPHQAQVTGDDLEVNSIVSATSLVPPGDDHALRNGSGQGSSSKDTHASRRPFLPEV-------------------------PYLRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMP--EEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
G RP ++L GDLNSTP+ +RYL GE +GP+ ++W ++ F WG R E E A A + ++ + GD A+ G+ S ++T S R P V P L L A G P FTN+ F ETLDY+F+ E PV + GA V MP EEA +P+ PSDHVS++ D+ V
Sbjct: 100 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKXXXXXAATAAVLEAEEGKKGG-------EEGGDGKAVAVDVGRESRGRETLLSSRA-TPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLE------------------SEAPVPLDPSGASFSVLSVGAMPTREEA---GQDTALPSWQTPSDHVSILCDVRV 318
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Match: A0A026WF76_OOCBI (2',5'-phosphodiesterase n=2 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WF76_OOCBI) HSP 1 Score: 54.3 bits (129), Expect = 6.310e-5 Identity = 35/104 (33.65%), Postives = 47/104 (45.19%), Query Frame = 1
Query: 382 LRLQLGLELASGFPAFTNFTPEFTETLDYVFIGGDGGGGGDRTGANGGASGLETPVIVVDKGARGETEVVAPMPEEAMLRAMTPGIPAETFPSDHVSLVVDLSV 693
L L + A G P +TN+TPEF++ LDY+F D + E E V PMP + L T G+P+ FPSDH+SL DL +
Sbjct: 528 LTQDLRMSSACGTPEYTNYTPEFSDCLDYIFYEKD----------------------------KFEVEQVVPMPSKEELTLHT-GLPSVVFPSDHISLCADLKL 602 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9807.19243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9807.19243.1 >prot_F-distichus_contig9807.19243.1 ID=prot_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=polypeptide|length=234bp RVSCLRNDLIARGFRPGVILGGDLNSTPSGPVRYLLGELVGPDSDLWRNVback to top mRNA from alignment at F-distichus_contig9807:211..1487+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9807.19243.1 ID=mRNA_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=mRNA|length=1277bp|location=Sequence derived from alignment at F-distichus_contig9807:211..1487+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9807:211..1487+ >mRNA_F-distichus_contig9807.19243.1 ID=mRNA_F-distichus_contig9807.19243.1|Name=mRNA_F-distichus_contig9807.19243.1|organism=Fucus distichus monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at F-distichus_contig9807:211..1487+ (Fucus distichus monoicous)back to top |