mRNA_F-distichus_contig97832.19227.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97832.19227.1
Unique NamemRNA_F-distichus_contig97832.19227.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 3.170e-65
Identity = 149/478 (31.17%), Postives = 229/478 (47.91%), Query Frame = 1
Query:   37 PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVTQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIP---------------------------------------------------------------------------EEFQEFLGAL------KDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILN 1227
            P+ +  + +K  +  K  +DGK+EK+K RLV +GF Q+  V Y    SP PS+ASI+++LA A  K  +L H D +QAF  A +DE +++ +P                                                                           ++ +E L +L      KD+G+  ++ GC + R+ +A  L+  Q  Y++S+V  FDV+  + I A+ GV      D+    E       +P REA+G +MW +T +RPDI+ AVRAVAR    P   H K ++KI   L  T++ GITY  +G GL +  Y D+ + A  + RRSVSG    +    IS  S+ Q + +  ++EAEY A  E VK+ L V R V  F+ P     ++ V EDN+GA+ L  N  +S RSKHIDV +  +R    +  + + +V + +QHAD+LTK L         + ++N
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFV-RAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI)

HSP 1 Score: 222 bits (565), Expect = 6.580e-64
Identity = 144/426 (33.80%), Postives = 219/426 (51.41%), Query Frame = 1
Query:    1 MVENCVYNQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVTQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPE-------EFQEFLGA---LKDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADE------PRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILNV 1230
            +  N V++ +  P     +G K ++K K    G +E+YK RLV +GF Q EG+ Y + +SP     S+R+++   A  D EL  +D + AFL  N+DE IY+E PE       E +E+L     + DMG+A Y  G  I R+R    L   Q  Y++ +++ F+++       +SG+  +   D+      PRN  E+E+MK  PY  AVG LM+  T TRPDI+  V    R+  +PG  H K   K+ R L  TK++ +TY  +   L +  Y+DSD+G CLD+ +S SG V MLA  AISW S  Q +TA  T EAE+ A  E     L +   +            + ++ DN  A+  + N   S  SKH+D+ + +V++    Q+V +  +R+     D LTK L       P  ++ NV
Sbjct:   70 IAHNDVWDLIELPNSCKPVGCKWIFKTKRDAKGNIERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGDLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQS-----CSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVGDPLTKGLP------PKAYLENV 483          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.340e-62
Identity = 153/487 (31.42%), Postives = 228/487 (46.82%), Query Frame = 1
Query:    1 MVENCVYNQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVTQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPEEFQEFLGA------------------------------------------------------------------------------------------LKDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAA--SGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPL 1185
            ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLV +G+ Q  G+ Y E YSP     S+R +LA   A+  E+   D + AFL   ++E IY+E+PE  +E L                                                                                            +KD+G A +  G  I  + + R L   Q  Y ES++K F  +     L     GV  L+ ADEP+  E+K +MK  PYR  VG LM+ A  TRPDI+ AV  ++RF ENPG  H    +K+ R LL TK+ GI Y G   G   EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY ALS+ VK+ + + R ++E    + +VGA  ++EDN+GA+ LA N     R+KHID+ +  +R+   + +V + YV +++Q A  +TK L
Sbjct:   92 LIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRGEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEI--GAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGL 574          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.100e-61
Identity = 130/335 (38.81%), Postives = 190/335 (56.72%), Query Frame = 1
Query:  169 EKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPE-------------------EFQEFLGAL---KDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVR 1104
            E Y+PT + +S+R+L A A  ++  LRH D +QAF+++++DE +++ +PE                   +F   L  +   K++GD  +Y+GC   R+  A  LK  Q  Y E +   F V+   +I    G+  LS  D      + EE+  +P+RE +G LMW AT TRPDIA AVRAVAR+C +P   H +  + I   ++ T E GIT+  G   GL ME + D+D+ +    RRSVSG ++M     ISW SR Q+     T+EAEY +L++V+K+VL  LRQV  FM P   +  + VFEDN+GAI+LA N  ++  SKHI V H  +R
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF-LRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 4.350e-61
Identity = 140/437 (32.04%), Postives = 212/437 (48.51%), Query Frame = 1
Query:  169 EKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPEEFQEFLGAL---------------------------------------------------------------------------------KDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILNVE 1233
            E Y+PT + +S+R+L A A  ++  LRH D +QAF+++++DE +++ +PE      G +                                                                                 K++GD  +Y+GC   R+  A  LK  Q  Y E +   F V+   +I    G+  LS  D      + EE+  +P+RE +G LMW AT TRPDIA AVRAVAR+C +P   H +  + I   ++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M     ISW SR Q+     T+EAEY +L++V+K+VL  LRQV  FM P   +  + VFEDN+GAI+LA N  ++  SKHIDV H  +R+    +++ + +V S  QHAD LTK L    F     ++++++
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF-LRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSMD 438          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.520e-60
Identity = 120/297 (40.40%), Postives = 173/297 (58.25%), Query Frame = 1
Query:  343 LKDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILNV 1230
            +K++GD  +Y+GC   R+  AR LK  Q  Y + +   F V+   +IL   G+  LS  D      + EE+  +P+RE +G LMW AT TRP+IA A RAVAR+C +P   H +  + I   ++ T + GIT+G G   GL ME + D+D+ +    RRSVSG  +M  +  ISW SR Q+     T+EAEY +L++V+K+VL  LRQV  FM P   +  + VFEDN+GAI+LA N  ++  SKH DV H  + +    +++ + YV S  QHAD LTK L    F     F+++V
Sbjct:    4 VKNLGDLRWYSGCVYERDWDARILKISQQTYAQELGMDFGVEYGKEILFPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLF-LRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMSV 292          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.700e-60
Identity = 129/347 (37.18%), Postives = 190/347 (54.76%), Query Frame = 1
Query:  157 VHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPEEFQEFLGAL------KDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTK 1179
            V+  E Y+PT + +S+ +L A A  ++  LRH D +QAF+++++DE +++ +PE    F+  L      K++GD  +Y+GC   R+  A  LK  Q  Y E +   F V+   +I    G+  LS  D      + EE+  +P+RE +G LMW AT TRPDIA           N G  +                W +  GG   GL ME + D+D+ +    RRSVSG ++M     ISW SR Q+     T+EAEYF+L++V+K+VL  LRQV  FM P   +  + VFEDN+GAI+LA N  ++  SKHIDV H  +R+    +++ + +V S  QHAD LTK
Sbjct:    6 VNCGETYAPTVAVSSVSLLAAMACEQNLSLRHFDIKQAFVQSDLDEHVFMRLPEGCGRFVRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIA-----------NAGMRYGLVT------------WVLHSGGVVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVKLSTTEAEYFSLADVMKEVLF-LRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 321          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 221 bits (562), Expect = 5.610e-60
Identity = 157/484 (32.44%), Postives = 232/484 (47.93%), Query Frame = 1
Query:    7 ENCVYNQVARPKDKLVIGTKMLYKRKIGQDG-KVEKYKCRLVTQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPEEF--------------------------------------------------------------------------------QEFLGA---LKDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVP-TLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQG-CGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKF 1200
            +N  +  V +PKD+ V+G+K ++KRK G  G +  +YK RLV +GF Q EGV Y E +SP    +SIR+LLA  A +D EL  LD + AFL   +DE IY++ PE F                                                                                +E L A   +KD+G A+   G  I R+R  R L+  Q  Y+  ++  F++     +    G    LS    P   EEK  M+  PY   VG +M+T   +RPD+A AV  ++R+   PG  H + V  +F+ L  T+  G+ YGG       ++ + D+D+   +DTR+S++G V  +   A+SW + +Q V A  T+EAEY A++E VK+ +  L+ + E  E +M  G V V+ DN+ AI LA N+    RSKHIDV    VRD   A ++ V  V ++D  +D+LTK L+V KF
Sbjct:  763 KNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTEDSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIW-LKGITE--ELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKF 1243          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.840e-59
Identity = 140/437 (32.04%), Postives = 212/437 (48.51%), Query Frame = 1
Query:  169 EKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIPEEFQEFLGAL---------------------------------------------------------------------------------KDMGDAEYYTGCHITRNRKARELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILNVE 1233
            E Y+PT + +S+R+L A A  ++  LRH D +QAF+++++DE +++ +PE      G +                                                                                 K++GD  +Y+GC   R+  A  LK  Q  Y E +   F V+   +I    G+  LS  D      + EE+  +P+RE +G LMW AT TRPDIA AVRAVAR+C +P   H +  + I   ++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M     ISW SR Q+     T+EAEY +L++V+K+VL  LRQV  FM P   +  + VFEDN+GAI+LA N  ++  SKHIDV H  +R+    +++ + +V S  QHAD LTK L    F     ++++++
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF-LRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSMD 612          
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 5.660e-59
Identity = 148/474 (31.22%), Postives = 227/474 (47.89%), Query Frame = 1
Query:   55 IGTKMLYKRKIGQDGKVEKYKCRLVTQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERIYIEIP---------------------------------------------------------------------------EEFQEFLGAL------KDMGDAEYYTGCHITRNRKA-RELKFDQCLYVESMVKIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWTATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGTSEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKFCKPAKFILNV 1230
            + +K  +  K  +DGK+EK+K RLV +GF Q+  V Y    SP PS+ASI+++LA A  K  +L H D +QAF  A +DE +++ +P                                                                           ++ +E L +L      KD+G+  ++ GC + R+ +A   L+  Q  Y++ +V  FDV+  + I A+ GV      D+    E       +P REA+G +MW +T +RPDI+ AVRAVAR    P   H K ++KI   L  T++ GITY  +G GL +E Y D+ + A  + RRSVSG    +    IS  S+ Q + +  ++EAEY A  E VK+ L V R V  F+ P     ++ V EDN+GA+ L  N  +S RSKHIDV +  +R    +  + + +V + +QHAD+LTK L         + ++N+
Sbjct: 1434 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLEVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFV-RAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1896          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97832.19227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE3.170e-6531.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5AHF5_VITVI6.580e-6433.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA3.340e-6231.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L0Z9_9PHAE2.100e-6138.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE4.350e-6132.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD60_9PHAE1.520e-6040.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBD2_9PHAE4.700e-6037.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FEW0_VITVI5.610e-6032.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KQB8_9PHAE1.840e-5932.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE5.660e-5931.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97832contigF-distichus_contig97832:679..2159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue2.9e-59
Seed eggNOG ortholog67593.Physo130920
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1236
Cds size1236
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.7685432-CDS-F-distichus_contig97832:678..15721622931157.7685432-CDS-F-distichus_contig97832:678..1572Fucus distichus monoicousCDSF-distichus_contig97832 679..1572 -
1690886183.2454028-CDS-F-distichus_contig97832:678..15721690886183.2454028-CDS-F-distichus_contig97832:678..1572Fucus distichus monoicousCDSF-distichus_contig97832 679..1572 -
1622931157.7837615-CDS-F-distichus_contig97832:1817..21591622931157.7837615-CDS-F-distichus_contig97832:1817..2159Fucus distichus monoicousCDSF-distichus_contig97832 1818..2159 -
1690886183.2685425-CDS-F-distichus_contig97832:1817..21591690886183.2685425-CDS-F-distichus_contig97832:1817..2159Fucus distichus monoicousCDSF-distichus_contig97832 1818..2159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97832.19227.1prot_F-distichus_contig97832.19227.1Fucus distichus monoicouspolypeptideF-distichus_contig97832 679..2159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97832.19227.1

>prot_F-distichus_contig97832.19227.1 ID=prot_F-distichus_contig97832.19227.1|Name=mRNA_F-distichus_contig97832.19227.1|organism=Fucus distichus monoicous|type=polypeptide|length=412bp
MVENCVYNQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVTQGFWQV
EGVHYTEKYSPTPSTASIRMLLATAAAKDGELRHLDAEQAFLKANIDERI
YIEIPEEFQEFLGALKDMGDAEYYTGCHITRNRKARELKFDQCLYVESMV
KIFDVKKEAKILAASGVPTLSNADEPRNPEEKEEMKMFPYREAVGKLMWT
ATMTRPDIACAVRAVARFCENPGPAHKKTVMKIFRNLLHTKEWGITYGGQ
GCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRMQEVTAPGT
SEAEYFALSEVVKDVLLVLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATN
KHASRRSKHIDVTHDLVRDASDAQKVRVAYVRSEDQHADLLTKPLDVQKF
CKPAKFILNVE*
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mRNA from alignment at F-distichus_contig97832:679..2159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97832.19227.1 ID=mRNA_F-distichus_contig97832.19227.1|Name=mRNA_F-distichus_contig97832.19227.1|organism=Fucus distichus monoicous|type=mRNA|length=1481bp|location=Sequence derived from alignment at F-distichus_contig97832:679..2159- (Fucus distichus monoicous)
ATGGTCGAGAACTGCGTTTATAATCAGGTGGCTCGGCCGAAGGATAAGCT CGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGATGGCA AGGTCGAGAAGTACAAGTGTCGACTTGTCACTCAAGGGTTCTGGCAGGTG GAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAACCGCGTC AATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGAGAGCTGCGCC ATCTCGACGCAGAACAGGCATTTTTGAAGGCGAATATTGACGAGAGGATA TACATAGAGATCCCCGAGGAGTTCCAGGAGTTTCTGGGGGCAGTGGGACG GCTTAATAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAATA ATAAGCTCTGTGACGACATGACGGCGATTGGATTCGAGCAGGCAAAGGGG AACCCGTGCGTGTTCTGCAAGGTCGTTAACGGTGAGGCGGAGATGGTGGT GGTCGTACACGTAGACGACATCCTTGCCCACGCGAAAGACCAAGCGACGA TAGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTAAGTTGAAGGACATGG GGGACGCTGAGTACTATACGGGTTGTCACATCACCAGGAACCGCAAGGCG CGTGAATTGAAGTTCGACCAATGCCTGTACGTGGAGTCAATGGTAAAAAT ATTTGATGTCAAGAAGGAAGCTAAGATACTGGCTGCGTCGGGGGTGCCGA CGCTCTCAAATGCGGATGAACCGCGAAACCCAGAGGAGAAGGAAGAGATG AAGATGTTCCCGTACCGAGAGGCAGTGGGGAAGCTCATGTGGACGGCGAC AATGACACGGCCGGATATTGCGTGCGCCGTACGCGCCGTGGCCAGGTTCT GCGAAAACCCTGGGCCGGCACACAAGAAAACAGTGATGAAGATCTTCCGG AATCTCCTTCACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTG TGGACTTTGCATGGAAGCATATACGGATTCGGATTTCGGAGCCTGCCTGG ACACAAGACGGTCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGAGAGCG ATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCACCAGGTACCTCGGA GGCAGAGTACTTTGCCTTATCGGAGGTAGTCAAGGATGTACTGCTAGTTT TGAGACAGGTGCAGGAGTTCATGGAACCATCGATGAGGGTCGGTGCGGTA AATGTGTTTGAAGATAATGAGGGGGCAATCAAGCTGGCCACAAACAAGCA TGCTAGCCGTAGGAGTAAGCACATTGATGTGACGCATGATCTAGTAAGGG ACGCGTCTGACGCGCAAAAGGTAAGAGTAGCGTACGTAAGGTCGGAAGAT CAGCACGCGGATTTGCTCACAAAACCGCTAGACGTGCAAAAGTTTTGTAA GCCCGCGAAGTTCATCTTAAATGTAGAGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig97832:679..2159-

>mRNA_F-distichus_contig97832.19227.1 ID=mRNA_F-distichus_contig97832.19227.1|Name=mRNA_F-distichus_contig97832.19227.1|organism=Fucus distichus monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at F-distichus_contig97832:679..2159- (Fucus distichus monoicous)
ATGGTCGAGAACTGCGTTTATAATCAGGTGGCTCGGCCGAAGGATAAGCT
CGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGATGGCA
AGGTCGAGAAGTACAAGTGTCGACTTGTCACTCAAGGGTTCTGGCAGGTG
GAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAACCGCGTC
AATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGAGAGCTGCGCC
ATCTCGACGCAGAACAGGCATTTTTGAAGGCGAATATTGACGAGAGGATA
TACATAGAGATCCCCGAGGAGTTCCAGGAGTTTCTGGGGGCAATGGTCGA
GAACTGCGTTTATAATCAGGTGGCTCGGCCGAAGGATAAGCTCGTGATCG
GCACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGATGGCAAGGTCGAG
AAGTACAAGTGTCGACTTGTCACTCAAGGGTTCTGGCAGGTGGAAGGTGT
GCACTACACGGAAAAGTACTCGCCCACGCCATCAACCGCGTCAATCCGGA
TGCTTTTGGCGACGGCAGCAGCCAAGGATGGAGAGCTGCGCCATCTCGAC
GCAGAACAGGCATTTTTGAAGGCGAATATTGACGAGAGGATATACATAGA
GATCCCCGAGGAGTTCCAGGAGTTTCTGGGGGCATTGAAGGACATGGGGG
ACGCTGAGTACTATACGGGTTGTCACATCACCAGGAACCGCAAGGCGCGT
GAATTGAAGTTCGACCAATGCCTGTACGTGGAGTCAATGGTAAAAATATT
TGATGTCAAGAAGGAAGCTAAGATACTGGCTGCGTCGGGGGTGCCGACGC
TCTCAAATGCGGATGAACCGCGAAACCCAGAGGAGAAGGAAGAGATGAAG
ATGTTCCCGTACCGAGAGGCAGTGGGGAAGCTCATGTGGACGGCGACAAT
GACACGGCCGGATATTGCGTGCGCCGTACGCGCCGTGGCCAGGTTCTGCG
AAAACCCTGGGCCGGCACACAAGAAAACAGTGATGAAGATCTTCCGGAAT
CTCCTTCACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGG
ACTTTGCATGGAAGCATATACGGATTCGGATTTCGGAGCCTGCCTGGACA
CAAGACGGTCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGAGAGCGATC
AGTTGGCACTCGAGGATGCAAGAAGTAACAGCACCAGGTACCTCGGAGGC
AGAGTACTTTGCCTTATCGGAGGTAGTCAAGGATGTACTGCTAGTTTTGA
GACAGGTGCAGGAGTTCATGGAACCATCGATGAGGGTCGGTGCGGTAAAT
GTGTTTGAAGATAATGAGGGGGCAATCAAGCTGGCCACAAACAAGCATGC
TAGCCGTAGGAGTAAGCACATTGATGTGACGCATGATCTAGTAAGGGACG
CGTCTGACGCGCAAAAGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAG
CACGCGGATTTGCTCACAAAACCGCTAGACGTGCAAAAGTTTTGTAAGCC
CGCGAAGTTCATCTTAAATGTAGAGTAGTTGAAGGACATGGGGGACGCTG
AGTACTATACGGGTTGTCACATCACCAGGAACCGCAAGGCGCGTGAATTG
AAGTTCGACCAATGCCTGTACGTGGAGTCAATGGTAAAAATATTTGATGT
CAAGAAGGAAGCTAAGATACTGGCTGCGTCGGGGGTGCCGACGCTCTCAA
ATGCGGATGAACCGCGAAACCCAGAGGAGAAGGAAGAGATGAAGATGTTC
CCGTACCGAGAGGCAGTGGGGAAGCTCATGTGGACGGCGACAATGACACG
GCCGGATATTGCGTGCGCCGTACGCGCCGTGGCCAGGTTCTGCGAAAACC
CTGGGCCGGCACACAAGAAAACAGTGATGAAGATCTTCCGGAATCTCCTT
CACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTTTG
CATGGAAGCATATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGAC
GGTCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGAGAGCGATCAGTTGG
CACTCGAGGATGCAAGAAGTAACAGCACCAGGTACCTCGGAGGCAGAGTA
CTTTGCCTTATCGGAGGTAGTCAAGGATGTACTGCTAGTTTTGAGACAGG
TGCAGGAGTTCATGGAACCATCGATGAGGGTCGGTGCGGTAAATGTGTTT
GAAGATAATGAGGGGGCAATCAAGCTGGCCACAAACAAGCATGCTAGCCG
TAGGAGTAAGCACATTGATGTGACGCATGATCTAGTAAGGGACGCGTCTG
ACGCGCAAAAGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAGCACGCG
GATTTGCTCACAAAACCGCTAGACGTGCAAAAGTTTTGTAAGCCCGCGAA
GTTCATCTTAAATGTAGAGTAG
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