mRNA_F-distichus_contig97073.19159.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97073.19159.1
Unique NamemRNA_F-distichus_contig97073.19159.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97073.19159.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 4.230e-63
Identity = 169/375 (45.07%), Postives = 204/375 (54.40%), Query Frame = 1 
Query:    1 GCSQLPEGPTSRLYSPEIAELLASAIAVGLQAR------ADARESGDRMTASQGDDG-------DAQTQVATLRLGNNRFSIWSWVQVIQALSSRPPRELDLSFCISFPTTTEAMASGSGPSTLPSASESAGFPEEAAKWIDGNAFCGGPQSRPL--------LSELLALTILPADAPGVQILDLSGSSGFLPPVDRPRLCGPREGGRAEGDGGVIAP-----CPSSSSTEAFFVNVRDALMSPLCRTVRLSLSGARGPWLQGLGTSTSTVG-------------GQVLGPKYVKVLCEAASACSSLRFLDLGGSDLSGSLGATAAAAAVKCLIRKSSDG--GDGATDPGLSRLSLRTCRLGVAGLSAIVSSLAA 1002
            GCSQ+P+GP  RLYSP++++LLASA+  GL+AR      A A  +G     S GD G       D + QV+TLR+GNNRFS  SWV V++ LSS PPRELDLSF  + P  + A   G G +T  + +              GN    G  + PL        L ELLA T+LPADAPGV+ L+L+GS+G L   DR R    R G   EG  G+  P     C SS   EAF + +RDALMSPLC T  L LSG RGP                            V GP+  K LCEAASAC+SLR LDL G DLSG +GA AAAAAV CLI    +   G G     L RLSLR C L  AGL+A+V +L A
Sbjct: 1214 GCSQIPDGPAGRLYSPQVSDLLASALRAGLEARVVAGKLAAANGAGRVADGSSGDGGNDERSESDGRAQVSTLRMGNNRFSWESWVDVLEVLSSAPPRELDLSFASALPGRSAATGDGVGTATAAAVA--------LTPVGGGNNDSPGAVTPPLRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLLDDRRRQ--QRRG--VEGGVGIEDPSEPLACLSSLGMEAFVLLLRDALMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNDDEDEVGLGMAGGVLRRLSLRACGLEAAGLAAVVRALVA 1576
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BLAST of mRNA_F-distichus_contig97073.19159.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 4.250e-59
Identity = 160/369 (43.36%), Postives = 193/369 (52.30%), Query Frame = 1 
Query:    1 GCSQLPEGPTSRLYSPEIAELLASAIAVGLQAR------ADARESGDRMTASQGDDG-------DAQTQVATLRLGNNRFSIWSWVQVIQALSSRPPRELDLSFCISFPTTTEAMASGSGPSTLPSASESAGFPEEAAKWIDGNAFCGGPQSRPL-----LSELLALTILPADAPGVQILDLSGSSGFLPPVDRPRLCGPREGGRAEGDGGVIAP--CPSSSSTEAFFVNVRDALMSPLCRTVRLSLSGARGPWLQGLGTSTSTVG-------------GQVLGPKYVKVLCEAASACSSLRFLDLGGSDLSGSLGATAAAAAVKCLIRKSSDG--GDGATDPGLSRLSLRTCRLGVAGLSAIVSSLAA 1002
            GCSQ+P+GP  RLYSP++++LLASA++ GL+AR      A A  +G     S GD G       D + QV+TLR+GNNRFS  SW  V++ LSS PPRELDLSF    P  + A A G     + +A+                     P  RP      L ELLA T+LPADAPGV+ L+L+GS+G L                        AP  CPSSS  EAF + +RD LMSPLC T  L LSG RGP                            V GP+  K LCEAASAC+SLR LDL G DLSG +GA AAAAAV CLI    +   G G     L RLSLR C LG AGL+ +V +L A
Sbjct: 1152 GCSQIPDGPVRRLYSPQVSDLLASALSAGLEARVVAGKLAAATGAGRVADGSGGDGGNDERSESDGRAQVSTLRMGNNRFSRESWGDVLEVLSSNPPRELDLSFASVLPGRSAATADG----VVTTATXXXXXXXXXXXXXXXXXGAVTPPPRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLXXXXXXXXXXXXXXXXXXXX-XXAPLACPSSSGMEAFLLLLRDTLMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNHDEDEVGLGMAGGRLRRLSLRACALGAAGLAVVVRALVA 1515
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97073.19159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG49_9PHAE4.230e-6345.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ0_ECTSI4.250e-5943.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97073contigF-distichus_contig97073:49..1113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.220635-CDS-F-distichus_contig97073:48..9511622931149.220635-CDS-F-distichus_contig97073:48..951Fucus distichus monoicousCDSF-distichus_contig97073 49..951 +
1690886179.6182745-CDS-F-distichus_contig97073:48..9511690886179.6182745-CDS-F-distichus_contig97073:48..951Fucus distichus monoicousCDSF-distichus_contig97073 49..951 +
1622931149.2474544-CDS-F-distichus_contig97073:1014..11131622931149.2474544-CDS-F-distichus_contig97073:1014..1113Fucus distichus monoicousCDSF-distichus_contig97073 1015..1113 +
1690886179.6285133-CDS-F-distichus_contig97073:1014..11131690886179.6285133-CDS-F-distichus_contig97073:1014..1113Fucus distichus monoicousCDSF-distichus_contig97073 1015..1113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97073.19159.1prot_F-distichus_contig97073.19159.1Fucus distichus monoicouspolypeptideF-distichus_contig97073 49..1113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97073.19159.1

>prot_F-distichus_contig97073.19159.1 ID=prot_F-distichus_contig97073.19159.1|Name=mRNA_F-distichus_contig97073.19159.1|organism=Fucus distichus monoicous|type=polypeptide|length=334bp
GCSQLPEGPTSRLYSPEIAELLASAIAVGLQARADARESGDRMTASQGDD
GDAQTQVATLRLGNNRFSIWSWVQVIQALSSRPPRELDLSFCISFPTTTE
AMASGSGPSTLPSASESAGFPEEAAKWIDGNAFCGGPQSRPLLSELLALT
ILPADAPGVQILDLSGSSGFLPPVDRPRLCGPREGGRAEGDGGVIAPCPS
SSSTEAFFVNVRDALMSPLCRTVRLSLSGARGPWLQGLGTSTSTVGGQVL
GPKYVKVLCEAASACSSLRFLDLGGSDLSGSLGATAAAAAVKCLIRKSSD
GGDGATDPGLSRLSLRTCRLGVAGLSAIVSSLAA
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mRNA from alignment at F-distichus_contig97073:49..1113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97073.19159.1 ID=mRNA_F-distichus_contig97073.19159.1|Name=mRNA_F-distichus_contig97073.19159.1|organism=Fucus distichus monoicous|type=mRNA|length=1065bp|location=Sequence derived from alignment at F-distichus_contig97073:49..1113+ (Fucus distichus monoicous)
GGCTGCAGCCAGCTTCCAGAAGGACCGACGAGCCGCCTGTACAGCCCGGA
AATCGCCGAGCTTTTGGCTTCCGCGATAGCTGTCGGCCTGCAAGCTCGAG
CCGACGCCCGAGAGTCCGGCGACAGGATGACAGCCTCCCAGGGCGACGAC
GGCGATGCGCAGACGCAAGTCGCGACGTTGCGTCTCGGGAACAATCGTTT
CAGTATCTGGTCATGGGTTCAGGTGATTCAAGCTCTGTCGTCGCGGCCGC
CGCGGGAGCTTGACCTCTCCTTCTGCATTTCGTTCCCGACGACGACCGAG
GCGATGGCGTCTGGATCAGGGCCATCCACTTTGCCCTCCGCTTCGGAGAG
CGCGGGTTTTCCGGAAGAGGCAGCGAAATGGATCGATGGCAATGCTTTTT
GTGGTGGACCCCAGAGCCGTCCGCTCTTGAGCGAGCTTCTCGCGCTAACG
ATTCTCCCCGCGGACGCTCCTGGCGTGCAAATCCTGGATTTGTCGGGGTC
CTCGGGATTTCTGCCACCAGTAGACCGTCCACGTTTATGTGGACCGAGGG
AAGGAGGAAGGGCAGAAGGTGATGGCGGTGTGATAGCCCCTTGCCCTTCG
AGCTCCTCTACGGAGGCGTTTTTCGTTAATGTCCGGGACGCGCTCATGTC
CCCGCTCTGCAGGACCGTGCGCCTCTCGCTCTCGGGAGCGCGAGGCCCTT
GGCTGCAAGGATTGGGGACCTCTACGTCTACTGTTGGCGGCCAAGTCCTC
GGTCCCAAGTATGTGAAGGTTTTGTGCGAAGCGGCGTCGGCCTGCTCATC
ACTGCGGTTCCTGGATCTTGGTGGAAGCGATCTGTCAGGTTCGCTTGGCG
CGACCGCGGCCGCGGCGGCCGTCAAATGTCTGATACGCAAAAGCAGCGAC
GGCGTTCTTCATCCGCGCGGCGAGGACCGCGATGGCAACGGAGAAGGTAG
AGCGGACGCAACAGAGGGAGACGGTGCAACCGATCCCGGCCTGAGCAGGC
TGAGCTTGCGGACGTGTCGCCTGGGAGTCGCGGGGCTGTCGGCGATCGTC
AGTTCCCTCGCCGCC
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Coding sequence (CDS) from alignment at F-distichus_contig97073:49..1113+

>mRNA_F-distichus_contig97073.19159.1 ID=mRNA_F-distichus_contig97073.19159.1|Name=mRNA_F-distichus_contig97073.19159.1|organism=Fucus distichus monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at F-distichus_contig97073:49..1113+ (Fucus distichus monoicous)
GGCTGCAGCCAGCTTCCAGAAGGACCGACGAGCCGCCTGTACAGCCCGGA
AATCGCCGAGCTTTTGGCTTCCGCGATAGCTGTCGGCCTGCAAGCTCGAG
CCGACGCCCGAGAGTCCGGCGACAGGATGACAGCCTCCCAGGGCGACGAC
GGCGATGCGCAGACGCAAGTCGCGACGTTGCGTCTCGGGAACAATCGTTT
CAGTATCTGGTCATGGGTTCAGGTGATTCAAGCTCTGTCGTCGCGGCCGC
CGCGGGAGCTTGACCTCTCCTTCTGCATTTCGTTCCCGACGACGACCGAG
GCGATGGCGTCTGGATCAGGGCCATCCACTTTGCCCTCCGCTTCGGAGAG
CGCGGGTTTTCCGGAAGAGGCAGCGAAATGGATCGATGGCAATGCTTTTT
GTGGTGGACCCCAGAGCCGTCCGCTCTTGAGCGAGCTTCTCGCGCTAACG
ATTCTCCCCGCGGACGCTCCTGGCGTGCAAATCCTGGATTTGTCGGGGTC
CTCGGGATTTCTGCCACCAGTAGACCGTCCACGTTTATGTGGACCGAGGG
AAGGAGGAAGGGCAGAAGGTGATGGCGGTGTGATAGCCCCTTGCCCTTCG
AGCTCCTCTACGGAGGCGTTTTTCGTTAATGTCCGGGACGCGCTCATGTC
CCCGCTCTGCAGGACCGTGCGCCTCTCGCTCTCGGGAGCGCGAGGCCCTT
GGCTGCAAGGATTGGGGACCTCTACGTCTACTGTTGGCGGCCAAGTCCTC
GGTCCCAAGTATGTGAAGGTTTTGTGCGAAGCGGCGTCGGCCTGCTCATC
ACTGCGGTTCCTGGATCTTGGTGGAAGCGATCTGTCAGGTTCGCTTGGCG
CGACCGCGGCCGCGGCGGCCGTCAAATGTCTGATACGCAAAAGCAGCGAC
GGCGGCTGCAGCCAGCTTCCAGAAGGACCGACGAGCCGCCTGTACAGCCC
GGAAATCGCCGAGCTTTTGGCTTCCGCGATAGCTGTCGGCCTGCAAGCTC
GAGCCGACGCCCGAGAGTCCGGCGACAGGATGACAGCCTCCCAGGGCGAC
GACGGCGATGCGCAGACGCAAGTCGCGACGTTGCGTCTCGGGAACAATCG
TTTCAGTATCTGGTCATGGGTTCAGGTGATTCAAGCTCTGTCGTCGCGGC
CGCCGCGGGAGCTTGACCTCTCCTTCTGCATTTCGTTCCCGACGACGACC
GAGGCGATGGCGTCTGGATCAGGGCCATCCACTTTGCCCTCCGCTTCGGA
GAGCGCGGGTTTTCCGGAAGAGGCAGCGAAATGGATCGATGGCAATGCTT
TTTGTGGTGGACCCCAGAGCCGTCCGCTCTTGAGCGAGCTTCTCGCGCTA
ACGATTCTCCCCGCGGACGCTCCTGGCGTGCAAATCCTGGATTTGTCGGG
GTCCTCGGGATTTCTGCCACCAGTAGACCGTCCACGTTTATGTGGACCGA
GGGAAGGAGGAAGGGCAGAAGGTGATGGCGGTGTGATAGCCCCTTGCCCT
TCGAGCTCCTCTACGGAGGCGTTTTTCGTTAATGTCCGGGACGCGCTCAT
GTCCCCGCTCTGCAGGACCGTGCGCCTCTCGCTCTCGGGAGCGCGAGGCC
CTTGGCTGCAAGGATTGGGGACCTCTACGTCTACTGTTGGCGGCCAAGTC
CTCGGTCCCAAGTATGTGAAGGTTTTGTGCGAAGCGGCGTCGGCCTGCTC
ATCACTGCGGTTCCTGGATCTTGGTGGAAGCGATCTGTCAGGTTCGCTTG
GCGCGACCGCGGCCGCGGCGGCCGTCAAATGTCTGATACGCAAAAGCAGC
GACGGCGGAGACGGTGCAACCGATCCCGGCCTGAGCAGGCTGAGCTTGCG
GACGTGTCGCCTGGGAGTCGCGGGGCTGTCGGCGATCGTCAGTTCCCTCG
CCGCCGGAGACGGTGCAACCGATCCCGGCCTGAGCAGGCTGAGCTTGCGG
ACGTGTCGCCTGGGAGTCGCGGGGCTGTCGGCGATCGTCAGTTCCCTCGC
CGCC
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