mRNA_F-distichus_contig96746.19127.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96746.19127.1
Unique NamemRNA_F-distichus_contig96746.19127.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 7.070e-83
Identity = 126/177 (71.19%), Postives = 148/177 (83.62%), Query Frame = 1 
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPAN---KTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDR 522
            +FHRDFRN +LLGLVQDRFP+S LAY+VVKVMLD+S+PTERK+ EQ +  +SAR LFDKL +AW  N   K K +PDW  F++WM A+C+DLT MVS I GSD QNP+Y+VN+A MVQYIR  LVKCT RDRYGKETARIMEILLQNK+L+QQQV EMAM+PP DAR RLYRL+RDR
Sbjct:   45 KFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDR 221
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BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-7
Identity = 50/183 (27.32%), Postives = 86/183 (46.99%), Query Frame = 1 
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERK--IKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRY--------GKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 519
            QFHRD R+ + L  V+ +   +T A  +V+ +L  S P ER   +    +  +S   L  ++    P N T ++        ++  + +D    V  +         Y V +  +++ +R R +   +R+RY        G   ARI  +LL  K+L+ QQV+E+AM+   + R RLYR+  D
Sbjct:  423 QFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQL--PPNVTVKM--------YLEVLQND---PVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYAD 590
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BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: A0A2J7PPT7_9NEOP (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PPT7_9NEOP)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-6
Identity = 43/174 (24.71%), Postives = 87/174 (50.00%), Query Frame = 1 
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMT-WMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 519
            +FH+DFR+  ++  +  R   +  A  ++K +L      +  ++ +A    S    F +L +A    K    P  G ++  ++  +  D +G VS +   D    +Y +N+ T    +    ++  + +R+G + ARI  ++   KF+EQ+Q+ ++AM+P  +A+   YRLL +
Sbjct:  214 RFHQDFRDQIMVSAISRRCDDN--AGELLKELLK-----QMYLRTEAWAATSNPVPFTELREA--VRKQSSRPLLGQYIEQYLKVMEEDSSGFVSKV--GDSSGGQYSINMKTAFVQLTWATIENIVMERFGSKGARIFRLVRAKKFVEQEQIQQVAMIPAKEAKLLTYRLLEE 376
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BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: F0XWN2_AURAN (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWN2_AURAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.220e-6
Identity = 33/103 (32.04%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:  202 KTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRL 510
            KT    D      ++ A+  D    VS + G    + +++   A  + ++R   +   + DRY  E+AR+  +L+++  LEQ  +AE A+LPP DAR RLYR+
Sbjct:  327 KTGAAVDKATIARYLEALQYDQVAFVSKLAGGRGDD-RFLFEAARCLDHVRRETLHALLVDRYDAESARLHRVLMRHDALEQGDLAERALLPPKDARERLYRM 428
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BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: R4G8T2_RHOPR (DNA-directed RNA polymerase III subunit RPC3 n=4 Tax=Triatominae TaxID=70999 RepID=R4G8T2_RHOPR)

HSP 1 Score: 53.5 bits (127), Expect = 3.970e-5
Identity = 40/175 (22.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:    1 QFHRDFRNNSLLGLVQDRFPR--STLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 519
            +FH+D R+  ++  V+ RF    ST   +++++M + + P          P ++ R   +K  K WP + ++ L        ++  I  D    +      +       VN+AT +Q I +  ++  +  R+G + ARI  ++ + ++++Q+Q+ ++AM+P  +A+   Y+LL++
Sbjct:  219 RFHQDLRDEIVIEAVRRRFDNEASTFMDLLLQLMYERTDPWATS--SNPIPFVTIRDSLEK--KKWP-HLSQYLDQ------YIKVIEEDSCNFIR--RSGEGSTSSVFVNLATALQNITAAAIENVVEHRFGCKAARIFRLVKKKRYIDQEQLQKLAMIPDKEAKQLTYKLLQE 380
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMS6_ECTSI7.070e-8371.19DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
W7U6Z3_9STRA2.400e-727.32DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A2J7PPT7_9NEOP1.890e-624.71DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
F0XWN2_AURAN2.220e-632.04DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
R4G8T2_RHOPR3.970e-522.86DNA-directed RNA polymerase III subunit RPC3 n=4 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96746contigF-distichus_contig96746:251..2025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.5
Seed ortholog evalue2.4e-66
Seed eggNOG ortholog2880.D7FMS6
Preferred namePOLR3C
KEGG rclassRC02795
KEGG koko:K03023
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006359,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsKOG2587@1,KOG2587@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons4
Model size537
Cds size537
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96746.19127.1prot_F-distichus_contig96746.19127.1Fucus distichus monoicouspolypeptideF-distichus_contig96746 251..2025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.636696-CDS-F-distichus_contig96746:250..4051622931145.636696-CDS-F-distichus_contig96746:250..405Fucus distichus monoicousCDSF-distichus_contig96746 251..405 +
1690886177.8782146-CDS-F-distichus_contig96746:250..4051690886177.8782146-CDS-F-distichus_contig96746:250..405Fucus distichus monoicousCDSF-distichus_contig96746 251..405 +
1622931145.6567998-CDS-F-distichus_contig96746:1099..12291622931145.6567998-CDS-F-distichus_contig96746:1099..1229Fucus distichus monoicousCDSF-distichus_contig96746 1100..1229 +
1690886177.8923774-CDS-F-distichus_contig96746:1099..12291690886177.8923774-CDS-F-distichus_contig96746:1099..1229Fucus distichus monoicousCDSF-distichus_contig96746 1100..1229 +
1622931145.6771078-CDS-F-distichus_contig96746:1463..15951622931145.6771078-CDS-F-distichus_contig96746:1463..1595Fucus distichus monoicousCDSF-distichus_contig96746 1464..1595 +
1690886177.902916-CDS-F-distichus_contig96746:1463..15951690886177.902916-CDS-F-distichus_contig96746:1463..1595Fucus distichus monoicousCDSF-distichus_contig96746 1464..1595 +
1622931145.6968768-CDS-F-distichus_contig96746:1905..20251622931145.6968768-CDS-F-distichus_contig96746:1905..2025Fucus distichus monoicousCDSF-distichus_contig96746 1906..2025 +
1690886177.9191306-CDS-F-distichus_contig96746:1905..20251690886177.9191306-CDS-F-distichus_contig96746:1905..2025Fucus distichus monoicousCDSF-distichus_contig96746 1906..2025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96746.19127.1

>prot_F-distichus_contig96746.19127.1 ID=prot_F-distichus_contig96746.19127.1|Name=mRNA_F-distichus_contig96746.19127.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPG
MSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSD
PQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQ
QVAEMAMLPPGDARTRLYRLLRDRCRRF*
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mRNA from alignment at F-distichus_contig96746:251..2025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96746.19127.1 ID=mRNA_F-distichus_contig96746.19127.1|Name=mRNA_F-distichus_contig96746.19127.1|organism=Fucus distichus monoicous|type=mRNA|length=1775bp|location=Sequence derived from alignment at F-distichus_contig96746:251..2025+ (Fucus distichus monoicous)
CAGTTTCACCGAGACTTTCGCAACAACAGCTTGTTGGGACTAGTGCAAGA
CAGGTTTCCTAGGAGCACCCTGGCCTACGTTGTCGTGAAGGTGATGCTGG
ACGACTCCGCTCCCACCGAGAGGAAGATCAAGGAGCAGGCTACACCGGGA
ATGAGGTGCGATCCAGACCACAAGTCCGTGTCAGCGGTTTCGAGTGTCAC
CACCCTTTGGGTTGCCATTGACTCCTTGTTGCCCCACGTTGCGACTTGCC
GGGTGTTCCCCCTTCCCTGCTCTACCTTCCTCTATGACACTATGACACAG
AGTAATACGTTAAAGATACCTTGTCCAATATATATACATATATAATATAT
CTTGTCCAGTATATATAAATGCTATCCAAACCCGTTTCTCCATCTCCATC
TCCATCGTCCATCTCCATCGTCCATCTCCATCTCCATCTCCATCTCCAGT
ATATATAAATCCAACAAAGATGAAAAAAAGGAGGGAAGCGATTGGAAGGG
TAGAAATCTACAAACAGCCGTTTTTGTGACAATTTCCAAATTATACAAAA
CGAGTGAGTACTGTACTTGACTTTTGGCTACTTTTTCCCACCCGAGCCTA
AACCTTAACATATCTGTGTATACCTGTACCAGTGGAGTCCTCAAGGAAAT
GGACCACTCGACCCGGTGCGACCACATGGCTCATCATGTATCATGCATCA
CGCAGACCCGCTCCTGTCCCCACGTTTAGGATTAATATTGGCAACCACCA
CGGGAGTGGGCAATGTTTAGGCTCGATCGGAAACGGTTTTGTGAGCGGAC
ACCCACGTTTCGTTCTTGGTTCCTCTTGGTTCCTCTTTGATACTCGTAGC
GCGAGGACCTTGTTTGACAAGCTCTACAAAGCTTGGCCGGCGAACAAGAC
AAAGCGCCTGCCGGACTGGGGCAACTTCATGACGTGGATGGGAGCCATCT
GCTCCGACCTCACGGGCATGGTGTCTACGGTGAGGCAGTGAGGCACCACT
TGGGTATACGCCTTACCGTGTATAGTGGAAACTCTTGCCCGCGCAGTGTT
GTGGTGTCTGTTTTGGTAAGCTTAGTTCTAGTTACCGGCAAAAGCGAGAG
GGTGCATCCACCCGAGGGGTGTGCTCCTTACCTTGTTATCCAGGTCTCAC
CCAAATTGTTCATGGTGAGGTCCCCACTCCTTTCGCTCGGCCTTAACCCC
CCCCGCCCGACAGATACACGGGTCTGATCCACAGAACCCCAAGTACATGG
TGAACATTGCCACAATGGTGCAGTACATTCGTAGCAGGTTGGTCAAATGC
ACCATGAGAGACCGTTACGGCAAGGAGACGGCGCGAATCATGGAGGTGAA
GTTTGGGTGTAGGTTGTAGTAGGAATTGCGTCATCGACTCGCTCGAAGTT
GGAAAGACAGCGTACAGCCCCGACGATATCGCCTCTCCTGTAGTTGACAA
ATTATACTATACTCTACTATGCTATTGTTGCACTTTCAGCGCTCTGGCGC
GCCTCTTTTATAATATCATAATCGTGAGTAGTTTATATTGACCCAACCAA
GGTCCATAACTTGTAACCAAAGTGAAGAACCCTTGGGACGAAAATAGTCA
TGGTTCCGTTGTTGGATTGTCAACTCTGCGGTTGCCGCTTGCGAACGCCC
GGCAGATCCTGCTGCAGAACAAGTTCTTGGAGCAGCAGCAGGTGGCCGAG
ATGGCGATGCTTCCCCCCGGCGATGCGCGAACCAGGTTGTATCGCCTTCT
TCGAGACAGGTGCCGCAGATTTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig96746:251..2025+

>mRNA_F-distichus_contig96746.19127.1 ID=mRNA_F-distichus_contig96746.19127.1|Name=mRNA_F-distichus_contig96746.19127.1|organism=Fucus distichus monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at F-distichus_contig96746:251..2025+ (Fucus distichus monoicous)
CAGTTTCACCGAGACTTTCGCAACAACAGCTTGTTGGGACTAGTGCAAGA
CAGGTTTCCTAGGAGCACCCTGGCCTACGTTGTCGTGAAGGTGATGCTGG
ACGACTCCGCTCCCACCGAGAGGAAGATCAAGGAGCAGGCTACACCGGGA
ATGAGCAGTTTCACCGAGACTTTCGCAACAACAGCTTGTTGGGACTAGTG
CAAGACAGGTTTCCTAGGAGCACCCTGGCCTACGTTGTCGTGAAGGTGAT
GCTGGACGACTCCGCTCCCACCGAGAGGAAGATCAAGGAGCAGGCTACAC
CGGGAATGAGCGCGAGGACCTTGTTTGACAAGCTCTACAAAGCTTGGCCG
GCGAACAAGACAAAGCGCCTGCCGGACTGGGGCAACTTCATGACGTGGAT
GGGAGCCATCTGCTCCGACCTCACGGGCATGGTGTCTACGCGCGAGGACC
TTGTTTGACAAGCTCTACAAAGCTTGGCCGGCGAACAAGACAAAGCGCCT
GCCGGACTGGGGCAACTTCATGACGTGGATGGGAGCCATCTGCTCCGACC
TCACGGGCATGGTGTCTACGATACACGGGTCTGATCCACAGAACCCCAAG
TACATGGTGAACATTGCCACAATGGTGCAGTACATTCGTAGCAGGTTGGT
CAAATGCACCATGAGAGACCGTTACGGCAAGGAGACGGCGCGAATCATGG
AGATACACGGGTCTGATCCACAGAACCCCAAGTACATGGTGAACATTGCC
ACAATGGTGCAGTACATTCGTAGCAGGTTGGTCAAATGCACCATGAGAGA
CCGTTACGGCAAGGAGACGGCGCGAATCATGGAGATCCTGCTGCAGAACA
AGTTCTTGGAGCAGCAGCAGGTGGCCGAGATGGCGATGCTTCCCCCCGGC
GATGCGCGAACCAGGTTGTATCGCCTTCTTCGAGACAGGTGCCGCAGATT
TTAGATCCTGCTGCAGAACAAGTTCTTGGAGCAGCAGCAGGTGGCCGAGA
TGGCGATGCTTCCCCCCGGCGATGCGCGAACCAGGTTGTATCGCCTTCTT
CGAGACAGGTGCCGCAGATTTTAG
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