prot_F-distichus_contig96746.19127.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig96746.19127.1
Unique Nameprot_F-distichus_contig96746.19127.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length179
Homology
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 7.070e-83
Identity = 126/177 (71.19%), Postives = 148/177 (83.62%), Query Frame = 0
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPAN---KTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDR 174
            +FHRDFRN +LLGLVQDRFP+S LAY+VVKVMLD+S+PTERK+ EQ +  +SAR LFDKL +AW  N   K K +PDW  F++WM A+C+DLT MVS I GSD QNP+Y+VN+A MVQYIR  LVKCT RDRYGKETARIMEILLQNK+L+QQQV EMAM+PP DAR RLYRL+RDR
Sbjct:   45 KFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDR 221          
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-7
Identity = 50/183 (27.32%), Postives = 86/183 (46.99%), Query Frame = 0
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERK--IKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRY--------GKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 173
            QFHRD R+ + L  V+ +   +T A  +V+ +L  S P ER   +    +  +S   L  ++    P N T ++        ++  + +D    V  +         Y V +  +++ +R R +   +R+RY        G   ARI  +LL  K+L+ QQV+E+AM+   + R RLYR+  D
Sbjct:  423 QFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQL--PPNVTVKM--------YLEVLQND---PVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYAD 590          
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: A0A2J7PPT7_9NEOP (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PPT7_9NEOP)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-6
Identity = 43/174 (24.71%), Postives = 87/174 (50.00%), Query Frame = 0
Query:    1 QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMT-WMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 173
            +FH+DFR+  ++  +  R   +  A  ++K +L      +  ++ +A    S    F +L +A    K    P  G ++  ++  +  D +G VS +   D    +Y +N+ T    +    ++  + +R+G + ARI  ++   KF+EQ+Q+ ++AM+P  +A+   YRLL +
Sbjct:  214 RFHQDFRDQIMVSAISRRCDDN--AGELLKELLK-----QMYLRTEAWAATSNPVPFTELREA--VRKQSSRPLLGQYIEQYLKVMEEDSSGFVSKV--GDSSGGQYSINMKTAFVQLTWATIENIVMERFGSKGARIFRLVRAKKFVEQEQIQQVAMIPAKEAKLLTYRLLEE 376          
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: F0XWN2_AURAN (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWN2_AURAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.220e-6
Identity = 33/103 (32.04%), Postives = 55/103 (53.40%), Query Frame = 0
Query:   68 KTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRL 170
            KT    D      ++ A+  D    VS + G    + +++   A  + ++R   +   + DRY  E+AR+  +L+++  LEQ  +AE A+LPP DAR RLYR+
Sbjct:  327 KTGAAVDKATIARYLEALQYDQVAFVSKLAGGRGDD-RFLFEAARCLDHVRRETLHALLVDRYDAESARLHRVLMRHDALEQGDLAERALLPPKDARERLYRM 428          
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Match: R4G8T2_RHOPR (DNA-directed RNA polymerase III subunit RPC3 n=4 Tax=Triatominae TaxID=70999 RepID=R4G8T2_RHOPR)

HSP 1 Score: 53.5 bits (127), Expect = 3.970e-5
Identity = 40/175 (22.86%), Postives = 88/175 (50.29%), Query Frame = 0
Query:    1 QFHRDFRNNSLLGLVQDRFPR--STLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRD 173
            +FH+D R+  ++  V+ RF    ST   +++++M + + P          P ++ R   +K  K WP + ++ L        ++  I  D    +      +       VN+AT +Q I +  ++  +  R+G + ARI  ++ + ++++Q+Q+ ++AM+P  +A+   Y+LL++
Sbjct:  219 RFHQDLRDEIVIEAVRRRFDNEASTFMDLLLQLMYERTDPWATS--SNPIPFVTIRDSLEK--KKWP-HLSQYLDQ------YIKVIEEDSCNFIR--RSGEGSTSSVFVNLATALQNITAAAIENVVEHRFGCKAARIFRLVKKKRYIDQEQLQKLAMIPDKEAKQLTYKLLQE 380          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96746.19127.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMS6_ECTSI7.070e-8371.19DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
W7U6Z3_9STRA2.400e-727.32DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A2J7PPT7_9NEOP1.890e-624.71DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
F0XWN2_AURAN2.220e-632.04DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
R4G8T2_RHOPR3.970e-522.86DNA-directed RNA polymerase III subunit RPC3 n=4 T... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 111..177
e-value: 1.0E-14
score: 56.1
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 1..173

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 111..177
e-value: 1.0E-14
score: 56.1
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 1..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96746contigF-distichus_contig96746:251..2025 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96746.19127.1mRNA_F-distichus_contig96746.19127.1Fucus distichus monoicousmRNAF-distichus_contig96746 251..2025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig96746.19127.1 ID=prot_F-distichus_contig96746.19127.1|Name=mRNA_F-distichus_contig96746.19127.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
QFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPG
MSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSD
PQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQ
QVAEMAMLPPGDARTRLYRLLRDRCRRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3