mRNA_F-distichus_contig96203.19073.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96203.19073.1
Unique NamemRNA_F-distichus_contig96203.19073.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig96203.19073.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 3.080e-60
Identity = 123/236 (52.12%), Postives = 138/236 (58.47%), Query Frame = 1 
Query:   46 GIGARKAASPPQVRPGLSEGLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHRLVLFVDNMREGVIVRRHLAHHTCEQIVLQSTASFLLCFDDCRTITWKPLLAVNGGASNGG----GGILGKLRKRGRVSR-----RAESIMAEHIAHVLPATDPDPSHPGFFGTRALRLSEDIANPARTFSLLYGDWG-GACGVARAERLQAATGGGNGTLDVECDDDRTYALLFQ 723
            G G +    PP VRPGLSEGLEG                                   KHRL  FV  M+EGVIVRRHLAH TC+QIVLQST       DDCRTI+WKPLLA +GGA         G+   LR+    SR     RAE +   HIA VLPATDPDPS PGFFGTRALRLSEDI NP+RTFSLLYGDWG G CG+   +++Q       GTLD+EC DD  YA+LFQ
Sbjct:   75 GSGRKGGGGPPVVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKK-KHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQST-------DDCRTISWKPLLAADGGAXXXXXXAISGLFQSLRRGAAGSRLSKKNRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCGME--DQVQ-------GTLDLECPDDGMYAMLFQ 293
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96203.19073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM1_ECTSI3.080e-6052.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96203contigF-distichus_contig96203:217..1800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004370.1
Exons3
Model size738
Cds size738
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96203.19073.1prot_F-distichus_contig96203.19073.1Fucus distichus monoicouspolypeptideF-distichus_contig96203 217..1800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.2785408-CDS-F-distichus_contig96203:216..6121622931139.2785408-CDS-F-distichus_contig96203:216..612Fucus distichus monoicousCDSF-distichus_contig96203 217..612 -
1690886174.8293822-CDS-F-distichus_contig96203:216..6121690886174.8293822-CDS-F-distichus_contig96203:216..612Fucus distichus monoicousCDSF-distichus_contig96203 217..612 -
1622931139.2940423-CDS-F-distichus_contig96203:999..11671622931139.2940423-CDS-F-distichus_contig96203:999..1167Fucus distichus monoicousCDSF-distichus_contig96203 1000..1167 -
1690886174.8413148-CDS-F-distichus_contig96203:999..11671690886174.8413148-CDS-F-distichus_contig96203:999..1167Fucus distichus monoicousCDSF-distichus_contig96203 1000..1167 -
1622931139.3154244-CDS-F-distichus_contig96203:1626..18001622931139.3154244-CDS-F-distichus_contig96203:1626..1800Fucus distichus monoicousCDSF-distichus_contig96203 1627..1800 -
1690886174.85188-CDS-F-distichus_contig96203:1626..18001690886174.85188-CDS-F-distichus_contig96203:1626..1800Fucus distichus monoicousCDSF-distichus_contig96203 1627..1800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96203.19073.1

>prot_F-distichus_contig96203.19073.1 ID=prot_F-distichus_contig96203.19073.1|Name=mRNA_F-distichus_contig96203.19073.1|organism=Fucus distichus monoicous|type=polypeptide|length=246bp
GVSESSQGISGSQSGGIGARKAASPPQVRPGLSEGLEGGGGGSRRQRLSL
LDDLQEEEGVLTNRRRKELERKKKHRLVLFVDNMREGVIVRRHLAHHTCE
QIVLQSTASFLLCFDDCRTITWKPLLAVNGGASNGGGGILGKLRKRGRVS
RRAESIMAEHIAHVLPATDPDPSHPGFFGTRALRLSEDIANPARTFSLLY
GDWGGACGVARAERLQAATGGGNGTLDVECDDDRTYALLFQVSAV*
back to top

mRNA from alignment at F-distichus_contig96203:217..1800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96203.19073.1 ID=mRNA_F-distichus_contig96203.19073.1|Name=mRNA_F-distichus_contig96203.19073.1|organism=Fucus distichus monoicous|type=mRNA|length=1584bp|location=Sequence derived from alignment at F-distichus_contig96203:217..1800- (Fucus distichus monoicous)
GGGGTTTCGGAAAGTTCGCAGGGGATCTCCGGGTCGCAGAGCGGAGGTAT
CGGGGCTCGGAAGGCAGCTTCGCCGCCCCAAGTTAGACCGGGGCTGTCGG
AGGGCTTGGAAGGCGGTGGAGGAGGTTCGCGTCGGCAGCGTTTAAGCTTG
CTGGACGACCTCCAAGAGGAAGAGGTGAAGACATCGTTGCCTCGCACAGA
TCATTGGGAGAGTTGCTAGTGGACTGTTCGGTGCATGCGGCCCGACATTA
AAAAACACTTTAAGAGGAAGACGGGCGCTTGTAAATCCTGGACGCTATGG
GTTATTTAGAGAATGATGGGATATAAGAAAGGGTGCTGAAAGTTTGAGCA
CGTTCGTCTCCTTATATCTGTATGGTGTCCTTTTCTATCTATGTGTAAGT
ATGTATTTATGGATGGATGGATGGATGGATGTCTATATTTGTGTCTGTAT
GTGTTGTATATGTCTGTATTTATGGATGTGTGTATTTCGTTTGTCTATCT
GTCTGTCTCTATGTATTAGAGTGCATTTTTTGCGACGACTTGTACTATTA
ATAGCGACTGCTGCATAACTACTGTCGTGGTGTGTGATTGATGTTGATGT
TCTTCTCGTTTTGTGAATGCGATCGTTTGCAAGGGTGTGCTGACCAACCG
CCGAAGGAAAGAGCTCGAGCGGAAAAAGAAGCACCGCCTGGTGCTGTTCG
TGGACAACATGAGGGAGGGGGTGATCGTGAGGCGACACTTGGCTCACCAC
ACCTGCGAACAGATCGTCTTGCAGAGCACGGCAAGTTTCCTTCTTTGTTT
TGTTATGAAATGCCAGTAGTTTGCTTGTTTTATTAGTGAATGCCAGTAAT
TCGTTCTGTTTTGTCATCAAATACCAGTAGTTTATTTGTTTGTTTTTGGG
GGCGGTGAGAGAGAGGAAAGCAAGGATGTTCGTCTGAAAAGTCTTGTTTG
TTAGGATGGGCTACCTTCTACTTCTGCCAGTCGTATTTCTATTTTTGTCT
TGTTTTTTCTGGTCGTACAAGCCGCGTCCGTAAACGCTTCAATAACACAT
CCGGTTGCATTGACCATATCCCACCGAAACTGTCAGAAGCCTTTCTTCCT
CGCCCCCCCCTGTCCTTGGAAATTGTGTCCCGTTACGCACGGCGCGTCAT
CAATGCGTTCCGTGTCGCCTGCCTACCGCCAAAAGCAGGACGACTGCCGG
ACCATAACATGGAAACCCCTGCTTGCGGTCAACGGCGGGGCCTCCAACGG
CGGAGGAGGCATCCTTGGCAAGCTTAGGAAGAGAGGCCGCGTGAGCCGCC
GCGCCGAGTCGATCATGGCCGAGCACATCGCGCATGTCCTCCCGGCGACG
GATCCAGACCCCAGCCACCCGGGGTTCTTCGGCACCCGCGCCCTCAGGCT
ATCGGAGGACATCGCCAACCCGGCGCGCACCTTCAGCCTGCTGTACGGCG
ACTGGGGAGGGGCTTGTGGGGTGGCCAGAGCGGAGCGTCTGCAGGCGGCG
ACAGGGGGTGGGAATGGAACGCTCGATGTCGAATGCGACGACGATCGCAC
GTACGCCTTGCTCTTCCAGGTTAGTGCAGTTTAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96203:217..1800-

>mRNA_F-distichus_contig96203.19073.1 ID=mRNA_F-distichus_contig96203.19073.1|Name=mRNA_F-distichus_contig96203.19073.1|organism=Fucus distichus monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at F-distichus_contig96203:217..1800- (Fucus distichus monoicous)
GGGGTTTCGGAAAGTTCGCAGGGGATCTCCGGGTCGCAGAGCGGAGGTAT
CGGGGCTCGGAAGGCAGCTTCGCCGCCCCAAGTTAGACCGGGGCTGTCGG
AGGGCTTGGAAGGCGGTGGAGGAGGTTCGCGTCGGCAGCGTTTAAGCTTG
CTGGACGACCTCCAAGAGGAAGAGGGGGTTTCGGAAAGTTCGCAGGGGAT
CTCCGGGTCGCAGAGCGGAGGTATCGGGGCTCGGAAGGCAGCTTCGCCGC
CCCAAGTTAGACCGGGGCTGTCGGAGGGCTTGGAAGGCGGTGGAGGAGGT
TCGCGTCGGCAGCGTTTAAGCTTGCTGGACGACCTCCAAGAGGAAGAGGG
TGTGCTGACCAACCGCCGAAGGAAAGAGCTCGAGCGGAAAAAGAAGCACC
GCCTGGTGCTGTTCGTGGACAACATGAGGGAGGGGGTGATCGTGAGGCGA
CACTTGGCTCACCACACCTGCGAACAGATCGTCTTGCAGAGCACGGCAAG
TTTCCTTCTTTGTTTTGGTGTGCTGACCAACCGCCGAAGGAAAGAGCTCG
AGCGGAAAAAGAAGCACCGCCTGGTGCTGTTCGTGGACAACATGAGGGAG
GGGGTGATCGTGAGGCGACACTTGGCTCACCACACCTGCGAACAGATCGT
CTTGCAGAGCACGGCAAGTTTCCTTCTTTGTTTTGACGACTGCCGGACCA
TAACATGGAAACCCCTGCTTGCGGTCAACGGCGGGGCCTCCAACGGCGGA
GGAGGCATCCTTGGCAAGCTTAGGAAGAGAGGCCGCGTGAGCCGCCGCGC
CGAGTCGATCATGGCCGAGCACATCGCGCATGTCCTCCCGGCGACGGATC
CAGACCCCAGCCACCCGGGGTTCTTCGGCACCCGCGCCCTCAGGCTATCG
GAGGACATCGCCAACCCGGCGCGCACCTTCAGCCTGCTGTACGGCGACTG
GGGAGGGGCTTGTGGGGTGGCCAGAGCGGAGCGTCTGCAGGCGGCGACAG
GGGGTGGGAATGGAACGCTCGATGTCGAATGCGACGACGATCGCACGTAC
GCCTTGCTCTTCCAGGTTAGTGCAGTTTAAGACGACTGCCGGACCATAAC
ATGGAAACCCCTGCTTGCGGTCAACGGCGGGGCCTCCAACGGCGGAGGAG
GCATCCTTGGCAAGCTTAGGAAGAGAGGCCGCGTGAGCCGCCGCGCCGAG
TCGATCATGGCCGAGCACATCGCGCATGTCCTCCCGGCGACGGATCCAGA
CCCCAGCCACCCGGGGTTCTTCGGCACCCGCGCCCTCAGGCTATCGGAGG
ACATCGCCAACCCGGCGCGCACCTTCAGCCTGCTGTACGGCGACTGGGGA
GGGGCTTGTGGGGTGGCCAGAGCGGAGCGTCTGCAGGCGGCGACAGGGGG
TGGGAATGGAACGCTCGATGTCGAATGCGACGACGATCGCACGTACGCCT
TGCTCTTCCAGGTTAGTGCAGTTTAA
back to top